Wall clock time and date at job start Mon Mar 30 2020 07:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00109 * 2 1 4 4 H 1.48508 * 109.46993 * 239.99764 * 3 2 1 5 5 H 1.48500 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47348 * 119.99834 * 3 2 1 7 7 C 1.37886 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99854 * 185.09595 * 7 2 1 9 9 C 1.50703 * 119.99721 * 5.09112 * 7 2 1 10 10 H 1.09003 * 109.46883 * 24.78635 * 9 7 2 11 11 N 1.46904 * 109.46715 * 144.78456 * 9 7 2 12 12 C 1.46901 * 110.99885 * 274.99914 * 11 9 7 13 13 C 1.52994 * 109.47287 * 180.02562 * 12 11 9 14 14 O 1.42905 * 109.47122 * 64.99576 * 13 12 11 15 15 C 1.42901 * 113.99884 * 179.97438 * 14 13 12 16 16 C 1.53783 * 113.61500 * 210.00372 * 15 14 13 17 17 C 1.53780 * 87.17289 * 220.06630 * 16 15 14 18 18 C 1.53783 * 87.08150 * 25.38850 * 17 16 15 19 19 C 1.50697 * 109.47181 * 264.78212 * 9 7 2 20 20 C 1.38229 * 120.00319 * 285.17738 * 19 9 7 21 21 C 1.38243 * 120.00216 * 179.78770 * 20 19 9 22 22 C 1.38235 * 119.99658 * 0.44533 * 21 20 19 23 23 C 1.38236 * 119.99961 * 359.81195 * 22 21 20 24 24 C 1.38230 * 120.00118 * 359.97438 * 23 22 21 25 25 H 0.96998 * 119.99838 * 0.02562 * 1 2 3 26 26 H 1.00895 * 110.99888 * 38.95469 * 11 9 7 27 27 H 1.09003 * 109.46966 * 59.99855 * 12 11 9 28 28 H 1.08997 * 109.47318 * 300.00159 * 12 11 9 29 29 H 1.09007 * 109.47181 * 305.00084 * 13 12 11 30 30 H 1.08993 * 109.47647 * 185.00177 * 13 12 11 31 31 H 1.08998 * 112.90798 * 341.25869 * 15 14 13 32 32 H 1.08993 * 113.61247 * 105.47571 * 16 15 14 33 33 H 1.09002 * 113.61109 * 334.65679 * 16 15 14 34 34 H 1.08995 * 113.61256 * 139.94018 * 17 16 15 35 35 H 1.09004 * 113.61291 * 270.84126 * 17 16 15 36 36 H 1.09005 * 113.61098 * 89.12249 * 18 17 16 37 37 H 1.09004 * 113.61464 * 219.93387 * 18 17 16 38 38 H 1.08002 * 120.00196 * 0.02562 * 20 19 9 39 39 H 1.07998 * 120.00068 * 180.27565 * 21 20 19 40 40 H 1.08004 * 119.99810 * 179.83350 * 22 21 20 41 41 H 1.08002 * 119.99486 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.00071 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0813 -1.1959 0.0836 9 6 1.2555 -2.4967 -0.1147 10 1 0.3016 -2.3243 -0.6132 11 7 2.0515 -3.4517 -0.8972 12 6 1.8275 -3.2681 -2.3374 13 6 2.6709 -4.2783 -3.1176 14 8 2.2157 -5.6020 -2.8299 15 6 2.9405 -6.6271 -3.5124 16 6 2.0993 -7.8780 -3.8168 17 6 3.3385 -8.7088 -3.4442 18 6 3.7796 -7.5174 -2.5778 19 6 1.0087 -3.0578 1.2620 20 6 2.0451 -3.6408 1.9667 21 6 1.8197 -4.1516 3.2314 22 6 0.5558 -4.0875 3.7875 23 6 -0.4818 -3.5091 3.0806 24 6 -0.2554 -2.9945 1.8178 25 1 -0.4850 0.8400 -0.0004 26 1 3.0319 -3.3759 -0.6712 27 1 2.1148 -2.2563 -2.6237 28 1 0.7728 -3.4240 -2.5639 29 1 3.7165 -4.1821 -2.8246 30 1 2.5738 -4.0848 -4.1858 31 1 3.4948 -6.2535 -4.3733 32 1 1.8128 -7.9670 -4.8647 33 1 1.2599 -8.0161 -3.1353 34 1 3.1064 -9.6050 -2.8688 35 1 4.0018 -8.9054 -4.2866 36 1 3.4002 -7.5559 -1.5566 37 1 4.8500 -7.3163 -2.6242 38 1 3.0319 -3.6940 1.5309 39 1 2.6305 -4.6032 3.7838 40 1 0.3791 -4.4889 4.7745 41 1 -1.4692 -3.4587 3.5153 42 1 -1.0660 -2.5423 1.2656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690951072.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:27 Heat of formation + Delta-G solvation = -6.757129 kcal Electronic energy + Delta-G solvation = -21057.028331 eV Core-core repulsion = 18002.261552 eV Total energy + Delta-G solvation = -3054.766780 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.05862 -38.26811 -36.32302 -34.89050 -32.40284 -30.61968 -29.86582 -27.93783 -25.68641 -25.56629 -24.41679 -22.80251 -21.77299 -20.95829 -19.73059 -19.52518 -17.07832 -16.63250 -15.96031 -15.46087 -15.13167 -14.65686 -14.57803 -14.10331 -13.87623 -13.41799 -12.98191 -12.86432 -12.38382 -12.37674 -12.34428 -11.95611 -11.68811 -11.59110 -11.31173 -11.13571 -10.98054 -10.94050 -10.61143 -10.49778 -10.33431 -10.18924 -10.02021 -9.86636 -9.43074 -9.08543 -8.59930 -7.90704 -7.61289 -7.19664 -6.11782 -4.23922 2.43356 2.49233 3.23343 3.28705 3.31018 4.05571 4.31409 4.63787 4.70479 4.85375 4.90213 4.94274 5.19275 5.29429 5.33129 5.61642 5.67992 5.73811 5.76734 5.83145 5.85900 5.86629 5.96129 5.99115 6.01254 6.21378 6.32248 6.41037 6.52686 6.55253 6.63307 6.73776 6.96494 7.12735 7.27039 7.43925 7.56195 7.65855 7.71012 7.82497 8.05199 8.12193 8.20889 8.65034 8.90094 9.43171 10.89475 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013795 B = 0.005268 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.306071 B = 5313.438321 C = 6728.143870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.074 3.926 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.056 0.944 9 C 0.229 3.771 10 H 0.070 0.930 11 N -0.678 5.678 12 C 0.071 3.929 13 C 0.066 3.934 14 O -0.353 6.353 15 C 0.059 3.941 16 C -0.137 4.137 17 C -0.143 4.143 18 C -0.155 4.155 19 C -0.006 4.006 20 C -0.111 4.111 21 C -0.133 4.133 22 C -0.157 4.157 23 C -0.130 4.130 24 C -0.112 4.112 25 H 0.265 0.735 26 H 0.323 0.677 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.517 -11.241 -4.614 12.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.075 0.925 9 C 0.121 3.879 10 H 0.088 0.912 11 N -0.308 5.308 12 C -0.059 4.059 13 C -0.011 4.011 14 O -0.271 6.271 15 C 0.000 4.000 16 C -0.175 4.175 17 C -0.181 4.181 18 C -0.193 4.193 19 C -0.007 4.007 20 C -0.129 4.129 21 C -0.152 4.152 22 C -0.175 4.175 23 C -0.148 4.148 24 C -0.130 4.130 25 H 0.075 0.925 26 H 0.139 0.861 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.126 0.874 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.712 -11.654 -4.451 13.015 hybrid contribution 1.220 2.022 -0.153 2.367 sum 4.933 -9.631 -4.605 11.760 Atomic orbital electron populations 1.69899 1.05938 1.27189 1.48530 1.24979 0.94850 0.99240 0.94021 0.86677 0.79756 0.83044 0.78703 1.20224 1.21141 1.20122 1.21620 0.93213 0.90932 1.52206 0.92536 1.18362 0.95625 0.86961 0.86922 0.91159 1.60876 1.11920 1.54638 1.03316 1.21742 0.99603 0.94842 0.89710 1.22680 0.97751 0.83200 0.97452 1.88135 1.57298 1.13864 1.67791 1.23656 0.93877 0.87772 0.94679 1.23187 0.97943 0.94791 1.01578 1.22653 0.98024 0.97411 0.99992 1.23486 0.99743 0.95826 1.00233 1.20410 0.91595 0.90572 0.98106 1.20794 0.98948 0.99185 0.94021 1.20924 0.96370 1.01722 0.96149 1.20759 0.93772 1.03557 0.99413 1.20955 0.98056 1.00258 0.95579 1.21040 0.97535 0.99213 0.95255 0.92531 0.86092 0.93447 0.91320 0.94009 0.94032 0.90402 0.91566 0.89125 0.91068 0.90456 0.88979 0.91824 0.87422 0.87864 0.87954 0.87747 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.17 12.84 55.43 0.71 -23.46 16 2 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 3 Si 0.89 20.69 29.54 -169.99 -5.02 15.66 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.54 -14.03 8.07 -34.44 -0.28 -14.31 16 8 H 0.06 1.46 7.76 -52.49 -0.41 1.05 16 9 C 0.23 5.53 2.26 -70.01 -0.16 5.38 16 10 H 0.07 1.90 6.84 -51.93 -0.35 1.54 16 11 N -0.68 -14.27 5.77 -109.19 -0.63 -14.90 16 12 C 0.07 1.35 5.86 -3.83 -0.02 1.33 16 13 C 0.07 1.04 6.06 37.15 0.22 1.26 16 14 O -0.35 -5.83 10.30 -35.23 -0.36 -6.19 16 15 C 0.06 0.75 4.32 -25.83 -0.11 0.64 16 16 C -0.14 -1.54 7.91 -25.92 -0.20 -1.75 16 17 C -0.14 -1.39 8.08 -25.92 -0.21 -1.60 16 18 C -0.16 -1.82 7.92 -25.83 -0.20 -2.02 16 19 C -0.01 -0.13 4.93 -104.63 -0.52 -0.65 16 20 C -0.11 -2.37 9.28 -39.58 -0.37 -2.74 16 21 C -0.13 -2.56 10.05 -39.58 -0.40 -2.96 16 22 C -0.16 -2.93 10.05 -39.58 -0.40 -3.32 16 23 C -0.13 -2.59 10.05 -39.59 -0.40 -2.99 16 24 C -0.11 -2.54 9.67 -39.58 -0.38 -2.93 16 25 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.32 6.59 7.86 -39.29 -0.31 6.28 16 27 H 0.05 0.94 8.00 -51.93 -0.42 0.53 16 28 H 0.07 1.37 8.05 -51.93 -0.42 0.96 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.88 7.87 -51.93 -0.41 0.47 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.11 2.20 7.43 -52.49 -0.39 1.81 16 39 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 40 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 41 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 42 H 0.12 2.76 8.00 -52.48 -0.42 2.34 16 LS Contribution 349.16 15.07 5.26 5.26 Total: -1.00 -27.94 349.16 -10.47 -38.41 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -6.91 Total: 10.01 kcal Atomic # 6 Polarization: -21.27 SS G_CDS: -3.52 Total: -24.79 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.08 Total: -38.36 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.36 Total: -6.19 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.94 -10.47 -38.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690951072.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.652 kcal (2) G-P(sol) polarization free energy of solvation -27.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds