Wall clock time and date at job start Mon Mar 30 2020 07:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00109 * 2 1 4 4 H 1.48508 * 109.46993 * 239.99764 * 3 2 1 5 5 H 1.48500 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47348 * 119.99834 * 3 2 1 7 7 C 1.37886 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99854 * 185.09595 * 7 2 1 9 9 C 1.50703 * 119.99721 * 5.09112 * 7 2 1 10 10 H 1.09003 * 109.46883 * 24.78635 * 9 7 2 11 11 N 1.46904 * 109.46715 * 144.78456 * 9 7 2 12 12 C 1.46901 * 110.99885 * 274.99914 * 11 9 7 13 13 C 1.52994 * 109.47287 * 180.02562 * 12 11 9 14 14 O 1.42905 * 109.47122 * 64.99576 * 13 12 11 15 15 C 1.42901 * 113.99884 * 179.97438 * 14 13 12 16 16 C 1.53783 * 113.61500 * 210.00372 * 15 14 13 17 17 C 1.53780 * 87.17289 * 220.06630 * 16 15 14 18 18 C 1.53783 * 87.08150 * 25.38850 * 17 16 15 19 19 C 1.50697 * 109.47181 * 264.78212 * 9 7 2 20 20 C 1.38229 * 120.00319 * 285.17738 * 19 9 7 21 21 C 1.38243 * 120.00216 * 179.78770 * 20 19 9 22 22 C 1.38235 * 119.99658 * 0.44533 * 21 20 19 23 23 C 1.38236 * 119.99961 * 359.81195 * 22 21 20 24 24 C 1.38230 * 120.00118 * 359.97438 * 23 22 21 25 25 H 0.96998 * 119.99838 * 0.02562 * 1 2 3 26 26 H 1.00895 * 110.99888 * 38.95469 * 11 9 7 27 27 H 1.09003 * 109.46966 * 59.99855 * 12 11 9 28 28 H 1.08997 * 109.47318 * 300.00159 * 12 11 9 29 29 H 1.09007 * 109.47181 * 305.00084 * 13 12 11 30 30 H 1.08993 * 109.47647 * 185.00177 * 13 12 11 31 31 H 1.08998 * 112.90798 * 341.25869 * 15 14 13 32 32 H 1.08993 * 113.61247 * 105.47571 * 16 15 14 33 33 H 1.09002 * 113.61109 * 334.65679 * 16 15 14 34 34 H 1.08995 * 113.61256 * 139.94018 * 17 16 15 35 35 H 1.09004 * 113.61291 * 270.84126 * 17 16 15 36 36 H 1.09005 * 113.61098 * 89.12249 * 18 17 16 37 37 H 1.09004 * 113.61464 * 219.93387 * 18 17 16 38 38 H 1.08002 * 120.00196 * 0.02562 * 20 19 9 39 39 H 1.07998 * 120.00068 * 180.27565 * 21 20 19 40 40 H 1.08004 * 119.99810 * 179.83350 * 22 21 20 41 41 H 1.08002 * 119.99486 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.00071 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0813 -1.1959 0.0836 9 6 1.2555 -2.4967 -0.1147 10 1 0.3016 -2.3243 -0.6132 11 7 2.0515 -3.4517 -0.8972 12 6 1.8275 -3.2681 -2.3374 13 6 2.6709 -4.2783 -3.1176 14 8 2.2157 -5.6020 -2.8299 15 6 2.9405 -6.6271 -3.5124 16 6 2.0993 -7.8780 -3.8168 17 6 3.3385 -8.7088 -3.4442 18 6 3.7796 -7.5174 -2.5778 19 6 1.0087 -3.0578 1.2620 20 6 2.0451 -3.6408 1.9667 21 6 1.8197 -4.1516 3.2314 22 6 0.5558 -4.0875 3.7875 23 6 -0.4818 -3.5091 3.0806 24 6 -0.2554 -2.9945 1.8178 25 1 -0.4850 0.8400 -0.0004 26 1 3.0319 -3.3759 -0.6712 27 1 2.1148 -2.2563 -2.6237 28 1 0.7728 -3.4240 -2.5639 29 1 3.7165 -4.1821 -2.8246 30 1 2.5738 -4.0848 -4.1858 31 1 3.4948 -6.2535 -4.3733 32 1 1.8128 -7.9670 -4.8647 33 1 1.2599 -8.0161 -3.1353 34 1 3.1064 -9.6050 -2.8688 35 1 4.0018 -8.9054 -4.2866 36 1 3.4002 -7.5559 -1.5566 37 1 4.8500 -7.3163 -2.6242 38 1 3.0319 -3.6940 1.5309 39 1 2.6305 -4.6032 3.7838 40 1 0.3791 -4.4889 4.7745 41 1 -1.4692 -3.4587 3.5153 42 1 -1.0660 -2.5423 1.2656 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690951072.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:27 Heat of formation + Delta-G solvation = -22.019755 kcal Electronic energy + Delta-G solvation = -21057.690169 eV Core-core repulsion = 18002.261552 eV Total energy + Delta-G solvation = -3055.428617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.12153 -39.86869 -37.68859 -36.39132 -34.29613 -32.26339 -31.47755 -29.49301 -27.50243 -26.48714 -25.40504 -24.52922 -23.34598 -22.49739 -21.45812 -20.44885 -18.79126 -18.04331 -17.50397 -16.87173 -16.41685 -16.26022 -15.93174 -15.56544 -15.46973 -14.92697 -14.52240 -14.39313 -13.96583 -13.75577 -13.45779 -13.32449 -13.29758 -13.12056 -12.85541 -12.77156 -12.58460 -12.25464 -12.04929 -11.89857 -11.70021 -11.52733 -11.49786 -11.31474 -11.20641 -10.60907 -10.20083 -9.52791 -9.28030 -8.98671 -8.10313 -6.31498 0.79950 0.87492 1.38090 1.38549 1.45815 2.37197 2.92389 3.08280 3.28589 3.68479 3.77385 3.80623 4.00319 4.03689 4.28549 4.32291 4.34359 4.35450 4.47784 4.52742 4.62829 4.73489 4.85547 4.90160 4.92259 4.95069 5.02620 5.07552 5.08990 5.11834 5.19764 5.32308 5.45670 5.49182 5.51875 5.64175 5.83875 5.92436 6.01137 6.20912 6.34885 6.48369 6.55147 6.88136 6.95639 7.38331 8.87177 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013795 B = 0.005268 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.306071 B = 5313.438321 C = 6728.143870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.026 3.974 3 Si 0.950 3.050 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.055 0.945 9 C 0.238 3.762 10 H 0.029 0.971 11 N -0.674 5.674 12 C 0.072 3.928 13 C 0.077 3.923 14 O -0.383 6.383 15 C 0.045 3.955 16 C -0.140 4.140 17 C -0.128 4.128 18 C -0.159 4.159 19 C -0.035 4.035 20 C -0.125 4.125 21 C -0.129 4.129 22 C -0.149 4.149 23 C -0.131 4.131 24 C -0.140 4.140 25 H 0.263 0.737 26 H 0.327 0.673 27 H 0.035 0.965 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.130 0.870 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.314 -12.592 -3.977 14.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.176 4.176 3 Si 0.776 3.224 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.073 0.927 9 C 0.130 3.870 10 H 0.047 0.953 11 N -0.303 5.303 12 C -0.058 4.058 13 C 0.000 4.000 14 O -0.302 6.302 15 C -0.012 4.012 16 C -0.177 4.177 17 C -0.165 4.165 18 C -0.196 4.196 19 C -0.036 4.036 20 C -0.143 4.143 21 C -0.147 4.147 22 C -0.167 4.167 23 C -0.149 4.149 24 C -0.159 4.159 25 H 0.072 0.928 26 H 0.144 0.856 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.130 0.870 39 H 0.158 0.842 40 H 0.162 0.838 41 H 0.148 0.852 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.524 -13.022 -3.824 14.653 hybrid contribution 0.637 2.342 -0.321 2.448 sum 6.160 -10.681 -4.145 13.008 Atomic orbital electron populations 1.70042 1.07232 1.27595 1.49859 1.25699 0.95550 1.02306 0.94029 0.85737 0.78532 0.79334 0.78820 1.19335 1.21066 1.19965 1.21853 0.93170 0.91975 1.51579 0.92690 1.18079 0.93860 0.87325 0.87781 0.95278 1.60850 1.11761 1.53480 1.04173 1.21728 0.99275 0.95674 0.89124 1.22515 0.97122 0.82349 0.97982 1.88091 1.58573 1.14564 1.68990 1.24036 0.94552 0.87225 0.95432 1.23195 0.97973 0.94435 1.02131 1.22641 0.97074 0.96658 1.00147 1.23463 1.00159 0.96810 0.99207 1.20420 0.92769 0.92498 0.97932 1.20925 0.98502 0.99645 0.95241 1.21348 0.97838 1.00318 0.95157 1.21234 0.92872 1.01856 1.00722 1.21263 0.99998 0.99309 0.94353 1.21027 0.96912 1.01014 0.96924 0.92785 0.85608 0.94704 0.93313 0.92916 0.91617 0.88413 0.89996 0.90931 0.90352 0.88199 0.91152 0.90671 0.87037 0.84192 0.83805 0.85170 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.21 12.84 21.45 0.28 -51.94 16 2 C 0.03 1.40 5.45 84.66 0.46 1.86 16 3 Si 0.95 43.10 29.54 68.60 2.03 45.12 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.55 -29.25 8.07 25.60 0.21 -29.05 16 8 H 0.05 2.89 7.76 -2.91 -0.02 2.87 16 9 C 0.24 12.10 2.26 43.42 0.10 12.20 16 10 H 0.03 1.70 6.84 -2.39 -0.02 1.68 16 11 N -0.67 -29.45 5.77 -499.35 -2.88 -32.34 16 12 C 0.07 2.86 5.86 86.30 0.51 3.36 16 13 C 0.08 2.39 6.06 71.98 0.44 2.82 16 14 O -0.38 -12.65 10.30 -148.98 -1.54 -14.19 16 15 C 0.05 1.10 4.32 31.18 0.13 1.23 16 16 C -0.14 -2.95 7.91 31.12 0.25 -2.70 16 17 C -0.13 -2.18 8.08 31.12 0.25 -1.93 16 18 C -0.16 -3.50 7.92 31.18 0.25 -3.25 16 19 C -0.03 -1.69 4.93 -19.87 -0.10 -1.79 16 20 C -0.12 -5.28 9.28 22.27 0.21 -5.07 16 21 C -0.13 -4.58 10.05 22.27 0.22 -4.36 16 22 C -0.15 -5.08 10.05 22.27 0.22 -4.86 16 23 C -0.13 -5.08 10.05 22.27 0.22 -4.85 16 24 C -0.14 -6.59 9.67 22.27 0.22 -6.38 16 25 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 26 H 0.33 13.65 7.86 -89.70 -0.71 12.95 16 27 H 0.03 1.46 8.00 -2.39 -0.02 1.44 16 28 H 0.05 2.09 8.05 -2.39 -0.02 2.07 16 29 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.10 1.96 7.87 -2.39 -0.02 1.94 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.11 4.51 7.43 -2.91 -0.02 4.49 16 39 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 40 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 41 H 0.13 4.25 8.06 -2.91 -0.02 4.22 16 42 H 0.09 4.67 8.00 -2.91 -0.02 4.65 16 Total: -1.00 -62.73 349.16 1.75 -60.99 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: 0.28 Total: 35.11 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 3.58 Total: -42.76 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -2.61 Total: -84.27 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -1.54 Total: -14.19 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -62.73 1.75 -60.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690951072.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.968 kcal (2) G-P(sol) polarization free energy of solvation -62.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds