Wall clock time and date at job start Mon Mar 30 2020 07:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99607 * 2 1 4 4 H 1.48498 * 109.46710 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47238 * 300.00011 * 3 2 1 6 6 H 1.48499 * 109.47028 * 60.00158 * 3 2 1 7 7 C 1.37869 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99752 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00469 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47667 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47739 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47297 * 180.02562 * 11 10 9 13 13 N 1.46907 * 109.46583 * 179.97438 * 12 11 10 14 14 C 1.46898 * 110.99340 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46821 * 179.97438 * 14 13 12 16 16 C 1.37983 * 119.88268 * 260.02197 * 15 14 13 17 17 C 1.38240 * 120.34910 * 180.02562 * 16 15 14 18 18 C 1.38393 * 119.77257 * 359.78866 * 17 16 15 19 19 C 1.37705 * 119.97562 * 0.03600 * 18 17 16 20 20 C 1.38929 * 120.78156 * 0.32939 * 19 18 17 21 21 O 1.36382 * 111.31211 * 179.09419 * 20 19 18 22 22 C 1.43767 * 109.10354 * 18.75089 * 21 20 19 23 23 C 1.51644 * 132.18511 * 180.35311 * 19 18 17 24 24 H 0.97003 * 120.00078 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46453 * 60.00231 * 9 7 2 26 26 H 1.08996 * 109.47410 * 300.00464 * 9 7 2 27 27 H 1.09000 * 109.47269 * 60.00222 * 10 9 7 28 28 H 1.09005 * 109.47076 * 300.00482 * 10 9 7 29 29 H 1.09000 * 109.46950 * 59.99548 * 11 10 9 30 30 H 1.09005 * 109.46839 * 300.00148 * 11 10 9 31 31 H 1.08999 * 109.46963 * 60.00152 * 12 11 10 32 32 H 1.08993 * 109.47372 * 299.99479 * 12 11 10 33 33 H 1.00892 * 111.00302 * 56.04502 * 13 12 11 34 34 H 1.09004 * 109.47239 * 60.00171 * 14 13 12 35 35 H 1.08996 * 109.47793 * 299.99817 * 14 13 12 36 36 H 1.08004 * 119.82177 * 359.97438 * 16 15 14 37 37 H 1.07999 * 120.11633 * 179.83691 * 17 16 15 38 38 H 1.07995 * 120.01422 * 180.02562 * 18 17 16 39 39 H 1.09002 * 110.74933 * 214.07837 * 22 21 20 40 40 H 1.08999 * 110.74617 * 90.91465 * 22 21 20 41 41 H 1.09007 * 110.93756 * 46.44374 * 23 19 18 42 42 H 1.08996 * 110.96917 * 282.77204 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4805 -4.9871 -0.0025 12 6 2.4748 -6.1499 -0.0031 13 7 1.7403 -7.4221 -0.0031 14 6 2.6649 -8.5637 -0.0043 15 6 1.8768 -9.8483 -0.0037 16 6 1.6954 -10.5428 1.1747 17 6 0.9747 -11.7225 1.1863 18 6 0.4291 -12.2060 0.0100 19 6 0.6059 -11.5126 -1.1665 20 6 1.3345 -10.3300 -1.1922 21 8 1.4042 -9.8180 -2.4543 22 6 0.3637 -10.4013 -3.2568 23 6 0.1362 -11.7758 -2.5842 24 1 -0.4850 0.8401 0.0004 25 1 0.6242 -2.5566 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.8727 -3.6047 0.8877 28 1 2.8714 -3.6038 -0.8923 29 1 0.8534 -5.0441 -0.8922 30 1 0.8542 -5.0455 0.8878 31 1 3.1015 -6.0926 0.8869 32 1 3.1014 -6.0918 -0.8931 33 1 1.1036 -7.4721 -0.7842 34 1 3.2935 -8.5230 0.8852 35 1 3.2921 -8.5223 -0.8947 36 1 2.1194 -10.1633 2.0927 37 1 0.8372 -12.2644 2.1103 38 1 -0.1350 -13.1269 0.0146 39 1 0.6951 -10.5260 -4.2877 40 1 -0.5418 -9.7960 -3.2145 41 1 -0.9193 -12.0476 -2.6007 42 1 0.7426 -12.5471 -3.0591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692981741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:46 Heat of formation + Delta-G solvation = -30.420752 kcal Electronic energy + Delta-G solvation = -20072.265437 eV Core-core repulsion = 17016.472526 eV Total energy + Delta-G solvation = -3055.792911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.32978 -37.91883 -36.57261 -34.39191 -32.99572 -31.96654 -30.54384 -29.50356 -28.13658 -25.49336 -23.80387 -23.42719 -22.23536 -21.35123 -20.91997 -19.89390 -17.59104 -16.78558 -16.50240 -16.23356 -15.96685 -15.34674 -14.66399 -14.50193 -14.32184 -14.17553 -13.55890 -13.47514 -13.24074 -12.73847 -12.61907 -12.30910 -12.25564 -11.98543 -11.78951 -11.59144 -11.36092 -11.10027 -10.97122 -10.89531 -10.50301 -10.42923 -10.37393 -9.57351 -9.23290 -9.03741 -8.90782 -8.41304 -8.29325 -8.21111 -5.94204 -3.96176 1.05902 1.13753 3.02304 3.34307 3.41399 3.45003 3.46074 4.10797 4.25336 4.42185 4.51355 4.60417 4.70341 4.75722 4.96388 5.11434 5.12749 5.23093 5.35412 5.40159 5.41227 5.44744 5.48145 5.61254 5.65882 5.84880 5.98634 6.10568 6.18101 6.22855 6.30296 6.31799 6.41299 6.58186 6.89133 6.94306 7.02798 7.10683 7.29186 7.48494 7.75909 7.92109 8.07504 8.50439 9.11696 9.67521 11.17230 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032669 B = 0.002543 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.864461 B =11008.594545 C =11395.457827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.108 4.108 11 C -0.115 4.115 12 C 0.059 3.941 13 N -0.684 5.684 14 C 0.101 3.899 15 C -0.094 4.094 16 C -0.068 4.068 17 C -0.148 4.148 18 C -0.074 4.074 19 C -0.178 4.178 20 C 0.110 3.890 21 O -0.304 6.304 22 C 0.050 3.950 23 C -0.109 4.109 24 H 0.259 0.741 25 H 0.014 0.986 26 H 0.016 0.984 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.026 0.974 33 H 0.341 0.659 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.161 -28.125 -2.828 28.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.069 4.069 13 N -0.315 5.315 14 C -0.028 4.028 15 C -0.095 4.095 16 C -0.087 4.087 17 C -0.167 4.167 18 C -0.092 4.092 19 C -0.178 4.178 20 C 0.065 3.935 21 O -0.218 6.218 22 C -0.025 4.025 23 C -0.146 4.146 24 H 0.069 0.931 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.158 0.842 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.123 0.877 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.096 -27.833 -2.257 27.946 hybrid contribution 0.537 0.828 -1.000 1.405 sum 1.633 -27.005 -3.257 27.250 Atomic orbital electron populations 1.69985 1.06041 1.26361 1.51227 1.25041 0.94846 0.99232 0.95489 0.86556 0.80125 0.83912 0.77532 1.19772 1.21060 1.21035 1.21336 0.93058 0.91220 1.50045 0.92722 1.19097 0.94052 0.91362 0.97151 1.21586 0.99065 0.93938 1.00071 1.21632 0.97886 0.93819 1.01962 1.22089 0.96267 0.88447 1.00138 1.60622 1.19520 1.01245 1.50137 1.20773 0.93421 0.87332 1.01245 1.19092 1.02962 0.97711 0.89737 1.20827 0.97144 0.94079 0.96613 1.21030 1.00283 0.97385 0.97962 1.20279 0.98878 0.99148 0.90885 1.20731 1.04644 0.96799 0.95666 1.19476 0.96507 0.92103 0.85463 1.86917 1.51145 1.65371 1.18319 1.23831 0.90694 0.92459 0.95482 1.21778 1.02888 0.98254 0.91675 0.93135 0.96751 0.96596 0.93433 0.93688 0.92814 0.91667 0.91223 0.95527 0.84181 0.90178 0.94346 0.84953 0.85431 0.85976 0.87686 0.90297 0.89107 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.70 13.29 55.43 0.74 -26.96 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.52 -15.19 9.11 -34.45 -0.31 -15.50 16 8 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 10 C -0.11 -2.33 5.15 -26.74 -0.14 -2.47 16 11 C -0.12 -2.08 5.47 -26.73 -0.15 -2.23 16 12 C 0.06 0.90 5.69 -3.82 -0.02 0.88 16 13 N -0.68 -9.69 6.49 -115.06 -0.75 -10.44 16 14 C 0.10 1.25 5.77 -4.98 -0.03 1.22 16 15 C -0.09 -1.11 5.41 -104.34 -0.56 -1.68 16 16 C -0.07 -0.69 9.63 -39.67 -0.38 -1.07 16 17 C -0.15 -1.31 10.07 -39.52 -0.40 -1.71 16 18 C -0.07 -0.65 10.03 -39.72 -0.40 -1.05 16 19 C -0.18 -1.77 6.27 -104.10 -0.65 -2.42 16 20 C 0.11 1.30 6.76 -38.95 -0.26 1.04 16 21 O -0.30 -3.60 11.07 -20.97 -0.23 -3.83 16 22 C 0.05 0.40 8.00 38.06 0.30 0.70 16 23 C -0.11 -0.78 7.12 -26.52 -0.19 -0.97 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.34 4.89 8.72 -39.30 -0.34 4.55 16 34 H 0.08 0.90 7.99 -51.93 -0.41 0.49 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.13 1.14 8.02 -52.48 -0.42 0.72 16 37 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 349.37 15.07 5.26 5.26 Total: -1.00 -32.58 349.37 -10.49 -43.07 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -7.06 Total: -0.91 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: -3.43 Total: -23.33 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: -0.01 Total: -37.40 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: -0.23 Total: -3.83 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.58 -10.49 -43.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692981741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.646 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds