Wall clock time and date at job start Mon Mar 30 2020 07:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99607 * 2 1 4 4 H 1.48498 * 109.46710 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47238 * 300.00011 * 3 2 1 6 6 H 1.48499 * 109.47028 * 60.00158 * 3 2 1 7 7 C 1.37869 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99752 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00469 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47667 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47739 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47297 * 180.02562 * 11 10 9 13 13 N 1.46907 * 109.46583 * 179.97438 * 12 11 10 14 14 C 1.46898 * 110.99340 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46821 * 179.97438 * 14 13 12 16 16 C 1.37983 * 119.88268 * 260.02197 * 15 14 13 17 17 C 1.38240 * 120.34910 * 180.02562 * 16 15 14 18 18 C 1.38393 * 119.77257 * 359.78866 * 17 16 15 19 19 C 1.37705 * 119.97562 * 0.03600 * 18 17 16 20 20 C 1.38929 * 120.78156 * 0.32939 * 19 18 17 21 21 O 1.36382 * 111.31211 * 179.09419 * 20 19 18 22 22 C 1.43767 * 109.10354 * 18.75089 * 21 20 19 23 23 C 1.51644 * 132.18511 * 180.35311 * 19 18 17 24 24 H 0.97003 * 120.00078 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46453 * 60.00231 * 9 7 2 26 26 H 1.08996 * 109.47410 * 300.00464 * 9 7 2 27 27 H 1.09000 * 109.47269 * 60.00222 * 10 9 7 28 28 H 1.09005 * 109.47076 * 300.00482 * 10 9 7 29 29 H 1.09000 * 109.46950 * 59.99548 * 11 10 9 30 30 H 1.09005 * 109.46839 * 300.00148 * 11 10 9 31 31 H 1.08999 * 109.46963 * 60.00152 * 12 11 10 32 32 H 1.08993 * 109.47372 * 299.99479 * 12 11 10 33 33 H 1.00892 * 111.00302 * 56.04502 * 13 12 11 34 34 H 1.09004 * 109.47239 * 60.00171 * 14 13 12 35 35 H 1.08996 * 109.47793 * 299.99817 * 14 13 12 36 36 H 1.08004 * 119.82177 * 359.97438 * 16 15 14 37 37 H 1.07999 * 120.11633 * 179.83691 * 17 16 15 38 38 H 1.07995 * 120.01422 * 180.02562 * 18 17 16 39 39 H 1.09002 * 110.74933 * 214.07837 * 22 21 20 40 40 H 1.08999 * 110.74617 * 90.91465 * 22 21 20 41 41 H 1.09007 * 110.93756 * 46.44374 * 23 19 18 42 42 H 1.08996 * 110.96917 * 282.77204 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4805 -4.9871 -0.0025 12 6 2.4748 -6.1499 -0.0031 13 7 1.7403 -7.4221 -0.0031 14 6 2.6649 -8.5637 -0.0043 15 6 1.8768 -9.8483 -0.0037 16 6 1.6954 -10.5428 1.1747 17 6 0.9747 -11.7225 1.1863 18 6 0.4291 -12.2060 0.0100 19 6 0.6059 -11.5126 -1.1665 20 6 1.3345 -10.3300 -1.1922 21 8 1.4042 -9.8180 -2.4543 22 6 0.3637 -10.4013 -3.2568 23 6 0.1362 -11.7758 -2.5842 24 1 -0.4850 0.8401 0.0004 25 1 0.6242 -2.5566 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 2.8727 -3.6047 0.8877 28 1 2.8714 -3.6038 -0.8923 29 1 0.8534 -5.0441 -0.8922 30 1 0.8542 -5.0455 0.8878 31 1 3.1015 -6.0926 0.8869 32 1 3.1014 -6.0918 -0.8931 33 1 1.1036 -7.4721 -0.7842 34 1 3.2935 -8.5230 0.8852 35 1 3.2921 -8.5223 -0.8947 36 1 2.1194 -10.1633 2.0927 37 1 0.8372 -12.2644 2.1103 38 1 -0.1350 -13.1269 0.0146 39 1 0.6951 -10.5260 -4.2877 40 1 -0.5418 -9.7960 -3.2145 41 1 -0.9193 -12.0476 -2.6007 42 1 0.7426 -12.5471 -3.0591 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692981741.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:45 Heat of formation + Delta-G solvation = -49.989065 kcal Electronic energy + Delta-G solvation = -20073.113983 eV Core-core repulsion = 17016.472526 eV Total energy + Delta-G solvation = -3056.641457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.03961 -38.73019 -37.75549 -36.04097 -34.45811 -33.30505 -31.58285 -30.20318 -29.69689 -26.93408 -25.23819 -24.16240 -23.07014 -22.76736 -21.99652 -21.43862 -18.45338 -18.29218 -17.51093 -17.25019 -17.03750 -16.53344 -16.30855 -15.69994 -15.63982 -15.15663 -14.56971 -14.38694 -14.21037 -13.96855 -13.88169 -13.58231 -13.35881 -13.26492 -12.94452 -12.86274 -12.61879 -12.48984 -12.27313 -12.19247 -12.11608 -11.77341 -11.66207 -11.39416 -11.30578 -11.00346 -10.56456 -9.77489 -9.41053 -9.05166 -8.20314 -6.31955 0.32662 0.39843 1.39199 1.39934 1.53552 2.34764 2.40666 2.70498 3.12283 3.33357 3.50219 3.67045 3.85096 3.98532 4.11712 4.14557 4.19597 4.33094 4.36989 4.50006 4.52945 4.60067 4.61781 4.68927 4.70369 4.82054 4.86990 4.89592 4.91731 5.13284 5.21570 5.26278 5.33491 5.40799 5.47422 5.54255 5.58494 5.72045 5.76882 5.86063 6.01116 6.23765 6.25223 6.32846 6.85673 7.37414 8.91941 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032669 B = 0.002543 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.864461 B =11008.594545 C =11395.457827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.096 4.096 11 C -0.104 4.104 12 C 0.070 3.930 13 N -0.688 5.688 14 C 0.106 3.894 15 C -0.117 4.117 16 C -0.079 4.079 17 C -0.148 4.148 18 C -0.076 4.076 19 C -0.188 4.188 20 C 0.085 3.915 21 O -0.330 6.330 22 C 0.041 3.959 23 C -0.103 4.103 24 H 0.264 0.736 25 H -0.012 1.012 26 H -0.010 1.010 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.029 0.971 33 H 0.337 0.663 34 H 0.090 0.910 35 H 0.030 0.970 36 H 0.144 0.856 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.834 -29.303 -2.681 29.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.134 4.134 11 C -0.142 4.142 12 C -0.058 4.058 13 N -0.318 5.318 14 C -0.022 4.022 15 C -0.118 4.118 16 C -0.097 4.097 17 C -0.166 4.166 18 C -0.094 4.094 19 C -0.189 4.189 20 C 0.039 3.961 21 O -0.245 6.245 22 C -0.033 4.033 23 C -0.139 4.139 24 H 0.072 0.928 25 H 0.007 0.993 26 H 0.008 0.992 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.155 0.845 34 H 0.108 0.892 35 H 0.048 0.952 36 H 0.161 0.839 37 H 0.171 0.829 38 H 0.167 0.833 39 H 0.143 0.857 40 H 0.098 0.902 41 H 0.128 0.872 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.775 -29.033 -2.111 29.163 hybrid contribution 0.265 1.136 -1.049 1.568 sum 2.040 -27.897 -3.160 28.149 Atomic orbital electron populations 1.70119 1.07880 1.27726 1.51836 1.26044 0.95823 1.03548 0.94728 0.85359 0.79041 0.78547 0.77855 1.18532 1.20267 1.20233 1.21768 0.93580 0.92481 1.50341 0.92164 1.19023 0.94507 0.93324 0.94593 1.21392 0.97978 0.93501 1.00535 1.21455 0.98018 0.93430 1.01344 1.21886 0.95344 0.87935 1.00672 1.60610 1.19848 1.01327 1.50010 1.20749 0.93170 0.87109 1.01205 1.19200 1.04067 0.97862 0.90692 1.21060 0.97532 0.94662 0.96473 1.21391 0.99206 0.96858 0.99158 1.20672 0.98490 0.99857 0.90414 1.21151 1.04130 0.96252 0.97330 1.19750 0.97543 0.93250 0.85520 1.86871 1.52522 1.66300 1.18793 1.24100 0.90157 0.92916 0.96148 1.21835 1.04206 0.97965 0.89932 0.92755 0.99337 0.99189 0.92805 0.93201 0.93276 0.92498 0.90416 0.95231 0.84543 0.89211 0.95228 0.83875 0.82862 0.83295 0.85711 0.90206 0.87194 0.88061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.72 13.29 21.45 0.28 -58.43 16 2 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 3 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.54 -32.20 9.11 25.60 0.23 -31.97 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.02 1.26 4.97 29.84 0.15 1.41 16 10 C -0.10 -4.14 5.15 30.59 0.16 -3.99 16 11 C -0.10 -3.82 5.47 30.59 0.17 -3.65 16 12 C 0.07 2.12 5.69 86.30 0.49 2.61 16 13 N -0.69 -19.40 6.49 -517.93 -3.36 -22.76 16 14 C 0.11 2.61 5.77 85.56 0.49 3.10 16 15 C -0.12 -2.75 5.41 -19.68 -0.11 -2.86 16 16 C -0.08 -1.52 9.63 22.21 0.21 -1.31 16 17 C -0.15 -2.33 10.07 22.31 0.22 -2.10 16 18 C -0.08 -1.18 10.03 22.18 0.22 -0.96 16 19 C -0.19 -3.50 6.27 -19.52 -0.12 -3.62 16 20 C 0.08 1.99 6.76 22.68 0.15 2.15 16 21 O -0.33 -7.88 11.07 -97.94 -1.08 -8.97 16 22 C 0.04 0.62 8.00 72.56 0.58 1.20 16 23 C -0.10 -1.29 7.12 30.73 0.22 -1.07 16 24 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 25 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 26 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 27 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.03 0.87 8.14 -2.39 -0.02 0.86 16 33 H 0.34 9.85 8.72 -89.70 -0.78 9.07 16 34 H 0.09 1.97 7.99 -2.38 -0.02 1.95 16 35 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.14 2.30 8.02 -2.91 -0.02 2.28 16 37 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 38 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 41 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -70.70 349.37 1.61 -69.09 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.20 Total: 14.48 kcal Atomic # 6 Polarization: -44.38 SS G_CDS: 3.54 Total: -40.84 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -3.08 Total: -81.19 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -1.08 Total: -8.97 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -70.70 1.61 -69.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692981741.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.105 kcal (2) G-P(sol) polarization free energy of solvation -70.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds