Wall clock time and date at job start Mon Mar 30 2020 07:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 120.00023 * 2 1 4 4 H 1.48496 * 109.47049 * 270.00191 * 3 2 1 5 5 H 1.48502 * 109.47057 * 30.00003 * 3 2 1 6 6 H 1.48497 * 109.47287 * 149.99826 * 3 2 1 7 7 C 1.37872 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00174 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00066 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.46873 * 179.97438 * 9 7 2 11 11 C 1.39669 * 120.00086 * 90.00180 * 10 9 7 12 12 C 1.38913 * 120.07598 * 89.12933 * 11 10 9 13 13 C 1.38100 * 119.92896 * 179.97438 * 12 11 10 14 14 C 1.38288 * 120.07318 * 0.02562 * 13 12 11 15 15 C 1.38290 * 120.14775 * 359.97438 * 14 13 12 16 16 C 1.38096 * 120.07597 * 0.02562 * 15 14 13 17 17 C 1.46506 * 119.99954 * 269.99832 * 10 9 7 18 18 H 1.09001 * 109.47251 * 357.75697 * 17 10 9 19 19 C 1.53000 * 109.47028 * 237.76085 * 17 10 9 20 20 C 1.53002 * 109.47308 * 180.02562 * 19 17 10 21 21 C 1.52996 * 109.46863 * 59.99907 * 20 19 17 22 22 C 1.53000 * 109.47234 * 300.00138 * 21 20 19 23 23 H 1.09002 * 109.47226 * 299.99997 * 22 21 20 24 24 O 1.42899 * 109.47111 * 179.97438 * 22 21 20 25 25 C 1.52997 * 109.47148 * 60.00431 * 22 21 20 26 26 H 0.96992 * 120.00090 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46677 * 59.99840 * 9 7 2 28 28 H 1.08994 * 109.46635 * 299.99820 * 9 7 2 29 29 H 1.08006 * 120.03999 * 0.02562 * 12 11 10 30 30 H 1.08000 * 119.96684 * 180.02562 * 13 12 11 31 31 H 1.07999 * 119.92839 * 179.72036 * 14 13 12 32 32 H 1.08000 * 119.95549 * 179.97438 * 15 14 13 33 33 H 1.08004 * 120.03966 * 179.97438 * 16 15 14 34 34 H 1.09002 * 109.47226 * 300.00201 * 19 17 10 35 35 H 1.09001 * 109.47408 * 60.00051 * 19 17 10 36 36 H 1.09002 * 109.47089 * 300.00221 * 20 19 17 37 37 H 1.08996 * 109.47187 * 180.02562 * 20 19 17 38 38 H 1.09001 * 109.47246 * 180.02562 * 21 20 19 39 39 H 1.08994 * 109.47135 * 60.00601 * 21 20 19 40 40 H 0.96707 * 114.00109 * 60.00316 * 24 22 21 41 41 H 1.09002 * 109.47206 * 180.02562 * 25 22 21 42 42 H 1.09002 * 109.47411 * 59.99679 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6569 -4.1434 1.2101 12 6 1.9593 -5.1771 1.8221 13 6 2.4111 -5.7000 3.0177 14 6 3.5563 -5.1954 3.6061 15 6 4.2532 -4.1664 2.9996 16 6 3.8069 -3.6389 1.8039 17 6 2.6791 -4.1694 -1.2682 18 1 2.1887 -3.6577 -2.0964 19 6 2.3506 -5.6626 -1.3251 20 6 2.8483 -6.2442 -2.6499 21 6 4.3623 -6.0508 -2.7550 22 6 4.6908 -4.5575 -2.6981 23 1 4.2008 -4.0459 -3.5265 24 8 6.1050 -4.3769 -2.7957 25 6 4.1932 -3.9760 -1.3733 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6242 -2.5567 0.8903 29 1 1.0650 -5.5720 1.3629 30 1 1.8694 -6.5040 3.4939 31 1 3.9050 -5.6030 4.5435 32 1 5.1470 -3.7744 3.4621 33 1 4.3514 -2.8350 1.3309 34 1 2.8410 -6.1743 -0.4970 35 1 1.2720 -5.8005 -1.2498 36 1 2.3583 -5.7326 -3.4782 37 1 2.6138 -7.3079 -2.6906 38 1 4.7169 -6.4647 -3.6989 39 1 4.8523 -6.5624 -1.9267 40 1 6.4903 -4.7229 -3.6124 41 1 4.4269 -2.9120 -1.3330 42 1 4.6833 -4.4876 -0.5450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712820149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:49 Heat of formation + Delta-G solvation = -30.764812 kcal Electronic energy + Delta-G solvation = -22081.686969 eV Core-core repulsion = 19025.879138 eV Total energy + Delta-G solvation = -3055.807831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.41139 -38.15880 -35.95027 -34.22850 -32.46074 -30.43270 -29.94211 -29.19491 -28.73349 -25.88797 -22.61583 -22.42141 -22.30722 -21.51981 -20.09410 -19.34705 -17.19423 -16.34729 -16.03798 -15.52283 -15.04743 -14.54510 -14.41999 -14.30092 -14.07996 -13.73556 -13.38266 -12.90772 -12.72377 -12.48849 -12.27501 -12.03840 -11.78437 -11.46078 -11.31891 -11.10376 -10.93255 -10.76433 -10.71303 -10.62392 -10.32875 -10.20806 -10.07183 -9.85011 -9.61846 -9.36111 -8.38921 -8.35579 -7.98054 -6.85246 -5.93382 -4.01904 1.94437 1.97478 3.32331 3.38983 3.43052 4.17739 4.36960 4.44407 4.56875 4.90181 5.02827 5.24569 5.34565 5.41124 5.42132 5.47456 5.49768 5.61737 5.68243 5.75044 5.81643 5.90953 6.02151 6.08137 6.15881 6.18139 6.26565 6.36180 6.41691 6.46577 6.58905 6.76123 6.82932 6.91589 7.02728 7.26487 7.32030 7.46823 7.56234 7.77891 7.94950 8.37312 8.53793 8.85255 9.10955 9.65070 11.09129 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011886 B = 0.007419 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.068137 B = 3773.425224 C = 4917.827409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.276 3.724 10 N -0.673 5.673 11 C 0.209 3.791 12 C -0.136 4.136 13 C -0.123 4.123 14 C -0.142 4.142 15 C -0.121 4.121 16 C -0.120 4.120 17 C 0.189 3.811 18 H 0.079 0.921 19 C -0.135 4.135 20 C -0.113 4.113 21 C -0.149 4.149 22 C 0.106 3.894 23 H 0.054 0.946 24 O -0.568 6.568 25 C -0.123 4.123 26 H 0.261 0.739 27 H 0.022 0.978 28 H 0.020 0.980 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.370 0.630 41 H 0.074 0.926 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.924 -13.183 -2.353 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.563 4.563 8 H 0.076 0.924 9 C 0.157 3.843 10 N -0.398 5.398 11 C 0.116 3.884 12 C -0.156 4.156 13 C -0.141 4.141 14 C -0.161 4.161 15 C -0.140 4.140 16 C -0.140 4.140 17 C 0.083 3.917 18 H 0.097 0.903 19 C -0.174 4.174 20 C -0.151 4.151 21 C -0.186 4.186 22 C 0.047 3.953 23 H 0.072 0.928 24 O -0.373 6.373 25 C -0.162 4.162 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.139 0.861 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.216 0.784 41 H 0.093 0.907 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.615 -12.727 -1.782 14.453 hybrid contribution 0.538 0.820 -0.470 1.088 sum 7.153 -11.906 -2.252 14.071 Atomic orbital electron populations 1.69933 1.05933 1.26697 1.51313 1.24971 0.94788 0.99017 0.95527 0.86635 0.79922 0.83677 0.78010 1.20786 1.21321 1.19970 1.21792 0.93601 0.91231 1.49676 0.92418 1.18917 0.86545 0.82132 0.96736 1.46321 1.53951 1.40375 0.99203 1.17423 0.91533 0.91382 0.88048 1.21647 1.00264 0.97684 0.95969 1.20914 0.96915 1.00327 0.95970 1.20940 0.96669 0.98472 0.99979 1.21008 0.99876 0.97168 0.95949 1.21818 0.97324 0.99414 0.95417 1.20318 0.91732 0.91689 0.87923 0.90310 1.22101 1.01051 0.97465 0.96754 1.21424 0.94769 1.00517 0.98422 1.22258 0.97248 0.97452 1.01676 1.21873 0.80658 0.93976 0.98834 0.92850 1.86570 1.22033 1.84102 1.44612 1.22042 0.97145 1.01993 0.95063 0.92962 0.95999 0.96225 0.86689 0.87037 0.87139 0.86984 0.86147 0.92012 0.91750 0.91902 0.92110 0.92401 0.91437 0.78424 0.90710 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.41 9.39 -34.44 -0.32 -14.73 16 8 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 9 C 0.28 6.98 5.42 -5.19 -0.03 6.95 16 10 N -0.67 -13.91 2.31 -165.54 -0.38 -14.29 16 11 C 0.21 4.07 4.05 -83.79 -0.34 3.73 16 12 C -0.14 -2.36 8.91 -39.38 -0.35 -2.71 16 13 C -0.12 -1.87 10.04 -39.61 -0.40 -2.27 16 14 C -0.14 -2.13 10.04 -39.54 -0.40 -2.53 16 15 C -0.12 -1.98 10.04 -39.61 -0.40 -2.38 16 16 C -0.12 -2.28 8.79 -39.38 -0.35 -2.62 16 17 C 0.19 3.33 2.64 -67.93 -0.18 3.15 16 18 H 0.08 1.47 7.78 -51.93 -0.40 1.07 16 19 C -0.13 -1.97 4.85 -26.73 -0.13 -2.10 16 20 C -0.11 -1.35 5.92 -26.73 -0.16 -1.51 16 21 C -0.15 -1.75 5.54 -26.73 -0.15 -1.90 16 22 C 0.11 1.48 3.47 -26.73 -0.09 1.39 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 O -0.57 -7.90 13.32 -35.23 -0.47 -8.37 16 25 C -0.12 -2.11 4.60 -26.73 -0.12 -2.23 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.02 0.58 7.90 -51.93 -0.41 0.17 16 28 H 0.02 0.54 8.05 -51.93 -0.42 0.13 16 29 H 0.12 1.91 8.06 -52.48 -0.42 1.49 16 30 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 33 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 34 H 0.06 0.94 7.07 -51.93 -0.37 0.57 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.37 3.31 9.08 45.56 0.41 3.72 16 41 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 42 H 0.06 1.16 7.02 -51.93 -0.36 0.79 16 LS Contribution 339.24 15.07 5.11 5.11 Total: -1.00 -30.15 339.24 -9.70 -39.86 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.17 Total: 4.82 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -3.51 Total: -18.21 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.35 Total: -39.99 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.47 Total: -8.37 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.15 -9.70 -39.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712820149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.091 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds