Wall clock time and date at job start Mon Mar 30 2020 07:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 120.00023 * 2 1 4 4 H 1.48496 * 109.47049 * 270.00191 * 3 2 1 5 5 H 1.48502 * 109.47057 * 30.00003 * 3 2 1 6 6 H 1.48497 * 109.47287 * 149.99826 * 3 2 1 7 7 C 1.37872 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00174 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00066 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.46873 * 179.97438 * 9 7 2 11 11 C 1.39669 * 120.00086 * 90.00180 * 10 9 7 12 12 C 1.38913 * 120.07598 * 89.12933 * 11 10 9 13 13 C 1.38100 * 119.92896 * 179.97438 * 12 11 10 14 14 C 1.38288 * 120.07318 * 0.02562 * 13 12 11 15 15 C 1.38290 * 120.14775 * 359.97438 * 14 13 12 16 16 C 1.38096 * 120.07597 * 0.02562 * 15 14 13 17 17 C 1.46506 * 119.99954 * 269.99832 * 10 9 7 18 18 H 1.09001 * 109.47251 * 357.75697 * 17 10 9 19 19 C 1.53000 * 109.47028 * 237.76085 * 17 10 9 20 20 C 1.53002 * 109.47308 * 180.02562 * 19 17 10 21 21 C 1.52996 * 109.46863 * 59.99907 * 20 19 17 22 22 C 1.53000 * 109.47234 * 300.00138 * 21 20 19 23 23 H 1.09002 * 109.47226 * 299.99997 * 22 21 20 24 24 O 1.42899 * 109.47111 * 179.97438 * 22 21 20 25 25 C 1.52997 * 109.47148 * 60.00431 * 22 21 20 26 26 H 0.96992 * 120.00090 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46677 * 59.99840 * 9 7 2 28 28 H 1.08994 * 109.46635 * 299.99820 * 9 7 2 29 29 H 1.08006 * 120.03999 * 0.02562 * 12 11 10 30 30 H 1.08000 * 119.96684 * 180.02562 * 13 12 11 31 31 H 1.07999 * 119.92839 * 179.72036 * 14 13 12 32 32 H 1.08000 * 119.95549 * 179.97438 * 15 14 13 33 33 H 1.08004 * 120.03966 * 179.97438 * 16 15 14 34 34 H 1.09002 * 109.47226 * 300.00201 * 19 17 10 35 35 H 1.09001 * 109.47408 * 60.00051 * 19 17 10 36 36 H 1.09002 * 109.47089 * 300.00221 * 20 19 17 37 37 H 1.08996 * 109.47187 * 180.02562 * 20 19 17 38 38 H 1.09001 * 109.47246 * 180.02562 * 21 20 19 39 39 H 1.08994 * 109.47135 * 60.00601 * 21 20 19 40 40 H 0.96707 * 114.00109 * 60.00316 * 24 22 21 41 41 H 1.09002 * 109.47206 * 180.02562 * 25 22 21 42 42 H 1.09002 * 109.47411 * 59.99679 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6569 -4.1434 1.2101 12 6 1.9593 -5.1771 1.8221 13 6 2.4111 -5.7000 3.0177 14 6 3.5563 -5.1954 3.6061 15 6 4.2532 -4.1664 2.9996 16 6 3.8069 -3.6389 1.8039 17 6 2.6791 -4.1694 -1.2682 18 1 2.1887 -3.6577 -2.0964 19 6 2.3506 -5.6626 -1.3251 20 6 2.8483 -6.2442 -2.6499 21 6 4.3623 -6.0508 -2.7550 22 6 4.6908 -4.5575 -2.6981 23 1 4.2008 -4.0459 -3.5265 24 8 6.1050 -4.3769 -2.7957 25 6 4.1932 -3.9760 -1.3733 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6242 -2.5567 0.8903 29 1 1.0650 -5.5720 1.3629 30 1 1.8694 -6.5040 3.4939 31 1 3.9050 -5.6030 4.5435 32 1 5.1470 -3.7744 3.4621 33 1 4.3514 -2.8350 1.3309 34 1 2.8410 -6.1743 -0.4970 35 1 1.2720 -5.8005 -1.2498 36 1 2.3583 -5.7326 -3.4782 37 1 2.6138 -7.3079 -2.6906 38 1 4.7169 -6.4647 -3.6989 39 1 4.8523 -6.5624 -1.9267 40 1 6.4903 -4.7229 -3.6124 41 1 4.4269 -2.9120 -1.3330 42 1 4.6833 -4.4876 -0.5450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712820149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:48 Heat of formation + Delta-G solvation = -48.611342 kcal Electronic energy + Delta-G solvation = -22082.460853 eV Core-core repulsion = 19025.879138 eV Total energy + Delta-G solvation = -3056.581715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.75571 -39.38142 -37.27365 -35.70232 -34.42324 -31.75428 -31.21536 -30.66231 -30.21443 -27.67729 -24.48615 -23.68614 -23.60173 -22.77683 -21.44023 -20.65060 -18.50697 -18.35685 -17.39602 -16.86002 -16.80285 -15.90430 -15.80984 -15.77377 -15.39951 -14.94903 -14.66322 -14.39928 -14.21986 -14.07170 -13.52007 -13.43782 -13.23541 -13.15368 -12.85206 -12.71452 -12.58238 -12.30623 -12.18120 -12.04378 -11.83836 -11.60544 -11.50023 -11.39836 -11.21249 -10.69012 -10.57928 -9.69536 -9.35878 -8.62890 -8.01590 -6.28688 0.60700 0.63340 1.35206 1.35764 1.46678 2.37333 2.77182 3.02359 3.11901 3.36982 3.78367 3.95431 4.13972 4.19925 4.20778 4.24758 4.35179 4.37962 4.46370 4.56974 4.59935 4.71039 4.71826 4.84362 4.89261 5.06850 5.13969 5.17453 5.18776 5.24937 5.25861 5.26304 5.28134 5.47768 5.50891 5.63389 5.71321 5.73244 5.97020 6.15320 6.24657 6.63400 6.93478 6.99289 7.28675 7.46507 8.89587 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011886 B = 0.007419 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.068137 B = 3773.425224 C = 4917.827409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.274 1.274 7 C -0.533 4.533 8 H 0.047 0.953 9 C 0.295 3.705 10 N -0.677 5.677 11 C 0.180 3.820 12 C -0.145 4.145 13 C -0.115 4.115 14 C -0.133 4.133 15 C -0.123 4.123 16 C -0.145 4.145 17 C 0.185 3.815 18 H 0.060 0.940 19 C -0.122 4.122 20 C -0.109 4.109 21 C -0.138 4.138 22 C 0.109 3.891 23 H 0.057 0.943 24 O -0.586 6.586 25 C -0.113 4.113 26 H 0.264 0.736 27 H 0.001 0.999 28 H -0.011 1.011 29 H 0.117 0.883 30 H 0.147 0.853 31 H 0.150 0.850 32 H 0.134 0.866 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.393 0.607 41 H 0.034 0.966 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.066 -15.090 -2.027 17.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.190 4.190 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.572 4.572 8 H 0.065 0.935 9 C 0.174 3.826 10 N -0.403 5.403 11 C 0.088 3.912 12 C -0.165 4.165 13 C -0.133 4.133 14 C -0.151 4.151 15 C -0.141 4.141 16 C -0.165 4.165 17 C 0.081 3.919 18 H 0.078 0.922 19 C -0.161 4.161 20 C -0.147 4.147 21 C -0.176 4.176 22 C 0.050 3.950 23 H 0.075 0.925 24 O -0.395 6.395 25 C -0.152 4.152 26 H 0.073 0.927 27 H 0.019 0.981 28 H 0.007 0.993 29 H 0.135 0.865 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.152 0.848 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.243 0.757 41 H 0.053 0.947 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.785 -14.666 -1.477 16.670 hybrid contribution 0.218 1.384 -0.514 1.493 sum 8.003 -13.282 -1.990 15.634 Atomic orbital electron populations 1.70041 1.07267 1.27679 1.52070 1.25760 0.95638 1.02423 0.95136 0.85631 0.78577 0.79553 0.78366 1.19858 1.20490 1.19860 1.22015 0.93173 0.92579 1.49434 0.93466 1.18385 0.86778 0.83387 0.94074 1.46131 1.53461 1.39591 1.01090 1.17638 0.92562 0.92919 0.88057 1.21729 1.00277 0.97469 0.97012 1.21323 0.96882 1.00412 0.94703 1.21379 0.95774 0.97098 1.00840 1.21287 1.00691 0.97367 0.94792 1.21738 0.97857 0.99821 0.97070 1.20447 0.91782 0.93637 0.86061 0.92178 1.21949 1.00815 0.94738 0.98621 1.21432 0.94863 1.01841 0.96517 1.22175 0.96972 0.95211 1.03235 1.21757 0.80948 0.95708 0.96584 0.92516 1.86509 1.21778 1.84677 1.46516 1.21853 0.96796 0.99529 0.97022 0.92707 0.98107 0.99307 0.86491 0.83489 0.83230 0.84812 0.88893 0.92394 0.92199 0.91315 0.89553 0.89081 0.91953 0.75724 0.94694 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 2 C 0.01 0.50 5.46 84.65 0.46 0.97 16 3 Si 0.95 45.81 29.54 68.60 2.03 47.84 16 4 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.53 -30.90 9.39 25.60 0.24 -30.66 16 8 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 9 C 0.30 15.96 5.42 85.64 0.46 16.42 16 10 N -0.68 -29.81 2.31 -677.65 -1.57 -31.38 16 11 C 0.18 7.30 4.05 38.22 0.15 7.45 16 12 C -0.14 -5.01 8.91 22.40 0.20 -4.81 16 13 C -0.11 -3.20 10.04 22.25 0.22 -2.98 16 14 C -0.13 -3.57 10.04 22.29 0.22 -3.35 16 15 C -0.12 -3.88 10.04 22.25 0.22 -3.66 16 16 C -0.14 -5.72 8.79 22.40 0.20 -5.52 16 17 C 0.19 6.89 2.64 44.99 0.12 7.01 16 18 H 0.06 2.40 7.78 -2.39 -0.02 2.39 16 19 C -0.12 -3.57 4.85 30.59 0.15 -3.42 16 20 C -0.11 -2.36 5.92 30.59 0.18 -2.17 16 21 C -0.14 -2.92 5.54 30.59 0.17 -2.75 16 22 C 0.11 3.00 3.47 30.59 0.11 3.11 16 23 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 24 O -0.59 -15.76 13.32 -148.98 -1.98 -17.75 16 25 C -0.11 -4.07 4.60 30.59 0.14 -3.92 16 26 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 27 H 0.00 0.05 7.90 -2.38 -0.02 0.04 16 28 H -0.01 -0.66 8.05 -2.39 -0.02 -0.68 16 29 H 0.12 3.90 8.06 -2.91 -0.02 3.88 16 30 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 31 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 32 H 0.13 3.55 8.06 -2.91 -0.02 3.52 16 33 H 0.09 4.08 8.06 -2.91 -0.02 4.05 16 34 H 0.06 1.74 7.07 -2.39 -0.02 1.72 16 35 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.39 6.22 9.08 -74.05 -0.67 5.54 16 41 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.05 2.03 7.02 -2.39 -0.02 2.02 16 Total: -1.00 -68.70 339.24 2.32 -66.38 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.31 Total: 19.29 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 3.25 Total: -28.29 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -1.28 Total: -87.47 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -1.98 Total: -17.75 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -68.70 2.32 -66.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712820149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.766 kcal (2) G-P(sol) polarization free energy of solvation -68.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds