Wall clock time and date at job start Mon Mar 30 2020 06:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.47057 * 2 1 4 4 N 1.46492 * 109.47239 * 179.97438 * 3 2 1 5 5 C 1.37094 * 120.00329 * 263.61408 * 4 3 2 6 6 H 1.07994 * 120.00316 * 142.25408 * 5 4 3 7 7 C 1.38953 * 119.99453 * 322.25705 * 5 4 3 8 8 N 1.31420 * 119.99547 * 157.62304 * 7 5 4 9 9 Si 1.86791 * 120.00295 * 337.61976 * 7 5 4 10 10 H 1.48502 * 109.47152 * 95.70579 * 9 7 5 11 11 H 1.48502 * 109.47555 * 215.70434 * 9 7 5 12 12 H 1.48500 * 109.47127 * 335.70543 * 9 7 5 13 13 C 1.34781 * 120.00047 * 83.61328 * 4 3 2 14 14 O 1.21292 * 120.00110 * 359.97438 * 13 4 3 15 15 C 1.50696 * 120.00054 * 180.02562 * 13 4 3 16 16 C 1.53002 * 109.47242 * 179.97438 * 15 13 4 17 17 H 1.08999 * 110.01259 * 306.38855 * 16 15 13 18 18 C 1.54262 * 110.03306 * 184.99642 * 16 15 13 19 19 C 1.54889 * 104.31525 * 216.98994 * 18 16 15 20 20 C 1.55240 * 102.58742 * 37.93164 * 19 18 16 21 21 C 1.53873 * 110.07414 * 67.80231 * 16 15 13 22 22 F 1.39891 * 110.03828 * 238.59367 * 21 16 15 23 23 F 1.39906 * 110.03355 * 359.97438 * 21 16 15 24 24 H 1.08995 * 109.46702 * 60.00242 * 1 2 3 25 25 H 1.09001 * 109.46839 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47202 * 300.00063 * 1 2 3 27 27 H 1.08998 * 109.47202 * 239.99937 * 2 1 3 28 28 H 1.09002 * 109.47234 * 119.99343 * 2 1 3 29 29 H 1.08998 * 109.47166 * 59.99915 * 3 2 1 30 30 H 1.09008 * 109.46867 * 300.00004 * 3 2 1 31 31 H 0.97003 * 119.99679 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.47488 * 59.99416 * 15 13 4 33 33 H 1.09004 * 109.46791 * 299.99430 * 15 13 4 34 34 H 1.08999 * 110.48988 * 335.73331 * 18 16 15 35 35 H 1.09003 * 110.48997 * 98.24724 * 18 16 15 36 36 H 1.08993 * 110.76327 * 156.32114 * 19 18 16 37 37 H 1.09005 * 110.75967 * 279.69884 * 19 18 16 38 38 H 1.09000 * 110.46841 * 203.39964 * 20 19 18 39 39 H 1.08998 * 110.47186 * 80.77879 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1900 1.5748 1.1807 6 1 5.1004 1.0168 1.3422 7 6 3.7128 2.4269 2.1692 8 7 4.0733 2.2487 3.4204 9 14 2.5592 3.8255 1.7197 10 1 1.1536 3.3947 1.9299 11 1 2.8497 5.0022 2.5777 12 1 2.7568 4.1915 0.2942 13 6 4.1794 1.3126 -1.1591 14 8 3.5734 1.1951 -2.2032 15 6 5.6864 1.3121 -1.1584 16 6 6.1970 1.1509 -2.5916 17 1 5.7484 0.2699 -3.0506 18 6 7.7343 1.0230 -2.5936 19 6 8.1807 1.7899 -3.8631 20 6 7.2030 2.9954 -3.8915 21 6 5.8591 2.4049 -3.4168 22 9 5.0730 2.0554 -4.5199 23 9 5.1808 3.3341 -2.6207 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8901 31 1 3.7405 2.8437 4.1104 32 1 6.0492 0.4847 -0.5486 33 1 6.0498 2.2536 -0.7466 34 1 8.1567 1.4844 -1.7010 35 1 8.0300 -0.0242 -2.6570 36 1 9.2124 2.1283 -3.7674 37 1 8.0570 1.1711 -4.7519 38 1 7.1108 3.3877 -4.9043 39 1 7.5395 3.7754 -3.2085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713935067.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:26 Heat of formation + Delta-G solvation = -148.716842 kcal Electronic energy + Delta-G solvation = -23107.715790 eV Core-core repulsion = 19492.563645 eV Total energy + Delta-G solvation = -3615.152145 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.144 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.30157 -46.35840 -38.95967 -37.18302 -35.17817 -33.01089 -31.67065 -31.10893 -27.73061 -26.54952 -25.24875 -24.01510 -21.19270 -21.14102 -19.93442 -18.85123 -17.30773 -16.83579 -16.40415 -16.01624 -15.62511 -15.12239 -14.48550 -14.21650 -14.08986 -13.66395 -13.63344 -13.44707 -12.94241 -12.77344 -12.57904 -12.47178 -12.18229 -11.82185 -11.62703 -11.52539 -11.28868 -11.22665 -11.01441 -10.98388 -10.93870 -10.71744 -10.55355 -10.39484 -10.05510 -9.98079 -9.73768 -9.14522 -8.50184 -7.74021 -6.48503 -4.05843 3.07564 3.23805 3.36226 3.81743 4.11087 4.14971 4.24428 4.37532 4.52939 4.70764 4.95829 5.17628 5.32493 5.32704 5.48050 5.54102 5.62375 5.66678 5.72250 5.75279 5.89882 5.93314 5.97638 6.10059 6.18156 6.20762 6.27832 6.34737 6.42973 6.44333 6.47310 6.64185 6.81786 6.94826 7.41296 8.08930 8.26740 8.98332 9.39848 9.76007 10.62336 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019945 B = 0.006840 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.530182 B = 4092.332969 C = 4604.847687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C 0.106 3.894 4 N -0.466 5.466 5 C -0.344 4.344 6 H 0.103 0.897 7 C 0.069 3.931 8 N -0.860 5.860 9 Si 0.871 3.129 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.259 1.259 13 C 0.482 3.518 14 O -0.592 6.592 15 C -0.112 4.112 16 C -0.117 4.117 17 H 0.101 0.899 18 C -0.120 4.120 19 C -0.121 4.121 20 C -0.166 4.166 21 C 0.296 3.704 22 F -0.197 7.197 23 F -0.192 7.192 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.274 0.726 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.571 -0.948 -9.270 10.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.018 4.018 4 N -0.186 5.186 5 C -0.471 4.471 6 H 0.120 0.880 7 C -0.139 4.139 8 N -0.495 5.495 9 Si 0.698 3.302 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.183 1.183 13 C 0.272 3.728 14 O -0.477 6.477 15 C -0.152 4.152 16 C -0.136 4.136 17 H 0.119 0.881 18 C -0.157 4.157 19 C -0.158 4.158 20 C -0.204 4.204 21 C 0.259 3.741 22 F -0.178 7.178 23 F -0.173 7.173 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.214 -0.923 -9.559 10.928 hybrid contribution -0.830 0.894 0.181 1.233 sum 4.385 -0.029 -9.379 10.353 Atomic orbital electron populations 1.21705 0.96438 1.00984 1.01348 1.21767 0.94777 0.98089 1.02344 1.21601 0.82753 0.96526 1.00878 1.43708 1.03837 1.64767 1.06285 1.19040 1.10964 1.26195 0.90870 0.87953 1.25314 0.96864 0.97043 0.94631 1.69782 1.43802 1.36383 0.99578 0.87019 0.80596 0.82556 0.80032 1.20168 1.21460 1.18291 1.20289 0.89518 0.79826 0.83212 1.90573 1.70431 1.55164 1.31524 1.21400 0.94592 1.04819 0.94403 1.22609 0.96557 0.97538 0.96914 0.88074 1.22443 0.93549 1.01297 0.98447 1.22506 0.98742 0.95900 0.98684 1.23460 0.93580 0.99770 1.03574 1.21545 0.85169 0.88090 0.79272 1.92980 1.77470 1.92624 1.54678 1.93017 1.82574 1.67451 1.74219 0.93044 0.93082 0.93052 0.91938 0.91498 0.91578 0.91914 0.91557 0.89021 0.88511 0.90252 0.90465 0.90312 0.90773 0.89532 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.91 37.16 0.37 -2.06 16 2 C -0.13 -2.64 6.21 -26.72 -0.17 -2.81 16 3 C 0.11 2.44 3.93 -4.04 -0.02 2.43 16 4 N -0.47 -11.46 2.18 -114.81 -0.25 -11.71 16 5 C -0.34 -8.93 9.05 -14.93 -0.14 -9.06 16 6 H 0.10 2.72 7.23 -52.49 -0.38 2.34 16 7 C 0.07 1.82 5.26 -17.46 -0.09 1.73 16 8 N -0.86 -23.66 13.96 55.50 0.77 -22.88 16 9 Si 0.87 21.00 25.06 -169.99 -4.26 16.74 16 10 H -0.27 -6.38 6.69 56.52 0.38 -6.00 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.26 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.48 11.36 6.48 -10.99 -0.07 11.28 16 14 O -0.59 -14.99 14.27 5.55 0.08 -14.91 16 15 C -0.11 -2.16 3.32 -27.88 -0.09 -2.25 16 16 C -0.12 -1.91 2.40 -89.50 -0.21 -2.12 16 17 H 0.10 1.75 7.80 -51.93 -0.41 1.34 16 18 C -0.12 -1.41 6.35 -25.07 -0.16 -1.57 16 19 C -0.12 -1.23 6.93 -24.55 -0.17 -1.40 16 20 C -0.17 -2.08 6.41 -24.88 -0.16 -2.24 16 21 C 0.30 5.16 1.80 -25.61 -0.05 5.11 16 22 F -0.20 -3.83 16.76 2.25 0.04 -3.79 16 23 F -0.19 -4.04 14.10 2.25 0.03 -4.01 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.07 1.56 3.65 -51.93 -0.19 1.37 16 30 H 0.06 1.47 7.62 -51.92 -0.40 1.08 16 31 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.09 1.65 7.67 -51.93 -0.40 1.25 16 33 H 0.10 1.89 7.59 -51.93 -0.39 1.50 16 34 H 0.08 0.89 7.86 -51.93 -0.41 0.49 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.98 8.11 -51.93 -0.42 0.56 16 39 H 0.10 1.11 8.12 -51.93 -0.42 0.69 16 LS Contribution 314.38 15.07 4.74 4.74 Total: -1.00 -30.42 314.38 -5.76 -36.18 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.95 Total: 2.61 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -0.95 Total: -2.97 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.52 Total: -34.59 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: 0.08 Total: -14.91 kcal Atomic # 9 Polarization: -7.87 SS G_CDS: 0.07 Total: -7.80 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.26 Total: 16.74 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.42 -5.76 -36.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713935067.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.539 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds