Wall clock time and date at job start Mon Mar 30 2020 07:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38240 * 119.99704 * 2 1 4 4 C 1.38237 * 119.99524 * 179.97438 * 3 2 1 5 5 C 1.38229 * 120.00067 * 0.25708 * 4 3 2 6 6 C 1.50707 * 120.00184 * 179.72726 * 5 4 3 7 7 C 1.52992 * 109.47315 * 89.99417 * 6 5 4 8 8 C 1.50697 * 109.47442 * 180.02562 * 7 6 5 9 9 O 1.21299 * 119.99852 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00376 * 180.02562 * 8 7 6 11 11 C 1.37102 * 119.99759 * 180.02562 * 10 8 7 12 12 H 1.08004 * 119.99758 * 137.92149 * 11 10 8 13 13 C 1.38944 * 120.00126 * 317.92267 * 11 10 8 14 14 N 1.31412 * 120.00268 * 339.60965 * 13 11 10 15 15 Si 1.86809 * 119.99930 * 159.60828 * 13 11 10 16 16 H 1.48499 * 109.47070 * 59.99885 * 15 13 11 17 17 H 1.48493 * 109.46970 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46797 * 300.00172 * 15 13 11 19 19 C 1.46493 * 120.00076 * 0.02562 * 10 8 7 20 20 C 1.52998 * 109.47362 * 124.51044 * 19 10 8 21 21 C 1.53001 * 109.47150 * 244.51180 * 19 10 8 22 22 C 1.38237 * 120.00235 * 359.48570 * 5 4 3 23 23 C 1.38229 * 119.99604 * 0.48970 * 22 5 4 24 24 H 1.08999 * 109.46571 * 89.99909 * 1 2 3 25 25 H 1.08998 * 109.47399 * 210.00072 * 1 2 3 26 26 H 1.09006 * 109.47109 * 330.00428 * 1 2 3 27 27 H 1.08001 * 120.00305 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.00141 * 179.97438 * 4 3 2 29 29 H 1.08996 * 109.47171 * 210.00014 * 6 5 4 30 30 H 1.09007 * 109.46849 * 329.99873 * 6 5 4 31 31 H 1.08996 * 109.47489 * 300.00402 * 7 6 5 32 32 H 1.09009 * 109.47302 * 60.00389 * 7 6 5 33 33 H 0.96998 * 120.00207 * 179.97438 * 14 13 11 34 34 H 1.09002 * 109.47206 * 4.50894 * 19 10 8 35 35 H 1.08994 * 109.46790 * 65.53095 * 20 19 10 36 36 H 1.08998 * 109.47358 * 185.53048 * 20 19 10 37 37 H 1.09000 * 109.46859 * 305.53154 * 20 19 10 38 38 H 1.09003 * 109.47155 * 61.66834 * 21 19 10 39 39 H 1.09004 * 109.47055 * 181.66736 * 21 19 10 40 40 H 1.08997 * 109.47248 * 301.66457 * 21 19 10 41 41 H 1.07996 * 120.00180 * 180.25783 * 22 5 4 42 42 H 1.08009 * 119.99995 * 179.76144 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 -0.0043 6 6 5.7787 0.0000 -0.0099 7 6 6.2941 -0.0026 1.4306 8 6 7.8011 -0.0020 1.4250 9 8 8.4037 0.0007 0.3722 10 7 8.4794 -0.0045 2.5896 11 6 9.8504 -0.0035 2.5844 12 1 10.3925 0.6220 3.2782 13 6 10.5423 -0.8069 1.6865 14 7 9.9458 -1.8391 1.1335 15 14 12.3207 -0.4200 1.2654 16 1 13.1440 -0.4704 2.5002 17 1 12.8273 -1.4194 0.2909 18 1 12.4042 0.9378 0.6699 19 6 7.7517 -0.0084 3.8610 20 6 8.2086 -1.1989 4.7066 21 6 8.0362 1.2920 4.6154 22 6 3.5805 -1.1971 0.0011 23 6 2.1983 -1.1971 0.0011 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8901 0.5138 27 1 1.6582 2.1325 -0.0004 28 1 4.1206 2.1325 0.0001 29 1 6.1401 -0.8890 -0.5268 30 1 6.1401 0.8910 -0.5235 31 1 5.9328 0.8864 1.9474 32 1 5.9327 -0.8935 1.9442 33 1 10.4287 -2.3998 0.5064 34 1 6.6821 -0.0895 3.6673 35 1 9.2548 -1.0680 4.9829 36 1 7.5994 -1.2591 5.6084 37 1 8.0970 -2.1176 4.1307 38 1 7.6837 2.1385 4.0260 39 1 7.5184 1.2764 5.5745 40 1 9.1089 1.3875 4.7832 41 1 4.1205 -2.1324 0.0015 42 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080212708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:56 Heat of formation + Delta-G solvation = -21.427341 kcal Electronic energy + Delta-G solvation = -21294.308444 eV Core-core repulsion = 18238.905516 eV Total energy + Delta-G solvation = -3055.402928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.39161 -38.38192 -35.27389 -34.11472 -32.29116 -30.78252 -30.71470 -29.80828 -27.04489 -26.38843 -24.84795 -22.83253 -22.56413 -20.64670 -20.37182 -18.83113 -16.50968 -15.76084 -15.50294 -15.44181 -14.88781 -14.60405 -14.09064 -13.96564 -13.76343 -13.28560 -13.12310 -12.93820 -12.78372 -12.41948 -12.28954 -12.05211 -11.73158 -11.56862 -11.37178 -11.12272 -11.07777 -10.90778 -10.73917 -10.63215 -10.56755 -10.38746 -10.25448 -10.07046 -9.86347 -8.78818 -8.65731 -8.33878 -7.89321 -6.99335 -6.02079 -3.73363 1.47951 1.54044 3.36271 3.43292 3.47317 3.87830 4.31040 4.48610 4.86230 4.90151 4.97441 5.14054 5.25916 5.27854 5.39857 5.49129 5.63696 5.68444 5.72196 5.72909 5.83952 5.85438 5.92740 6.02293 6.12288 6.19917 6.25033 6.27168 6.30430 6.50565 6.55437 6.58048 6.62561 6.67947 6.70952 6.77667 6.96543 6.98831 7.17740 7.18049 7.72201 8.37569 9.18381 9.30008 9.79889 10.43516 11.07466 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024586 B = 0.004301 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.604842 B = 6507.933166 C = 7035.079696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.103 4.103 3 C -0.121 4.121 4 C -0.115 4.115 5 C -0.073 4.073 6 C -0.063 4.063 7 C -0.125 4.125 8 C 0.474 3.526 9 O -0.539 6.539 10 N -0.451 5.451 11 C -0.345 4.345 12 H 0.075 0.925 13 C 0.074 3.926 14 N -0.831 5.831 15 Si 0.906 3.094 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.123 3.877 20 C -0.142 4.142 21 C -0.154 4.154 22 C -0.114 4.114 23 C -0.120 4.120 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.262 0.738 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.039 0.961 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.060 0.940 41 H 0.122 0.878 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.344 2.783 1.798 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.103 4.103 3 C -0.139 4.139 4 C -0.133 4.133 5 C -0.073 4.073 6 C -0.100 4.100 7 C -0.165 4.165 8 C 0.261 3.739 9 O -0.417 6.417 10 N -0.174 5.174 11 C -0.471 4.471 12 H 0.093 0.907 13 C -0.136 4.136 14 N -0.465 5.465 15 Si 0.733 3.267 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.202 1.202 19 C 0.019 3.981 20 C -0.200 4.200 21 C -0.212 4.212 22 C -0.132 4.132 23 C -0.138 4.138 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.135 0.865 28 H 0.139 0.861 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.140 0.860 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.007 2.615 1.130 15.275 hybrid contribution 0.856 0.027 -0.123 0.865 sum -14.151 2.642 1.007 14.430 Atomic orbital electron populations 1.20745 0.91636 1.02411 1.01931 1.19842 0.95733 0.93362 1.01389 1.20971 0.94194 0.97236 1.01490 1.21086 0.93943 0.97881 1.00431 1.20166 0.96522 0.92926 0.97667 1.20326 0.88455 1.04160 0.97089 1.21564 0.96290 1.01994 0.96685 1.19875 0.87500 0.81739 0.84790 1.90509 1.69762 1.50899 1.30562 1.43369 1.05353 1.66765 1.01900 1.18775 0.80083 1.24918 1.23362 0.90739 1.25123 0.98303 0.93232 0.96960 1.69864 1.37642 1.12481 1.26493 0.86394 0.83817 0.78464 0.78014 1.20568 1.21380 1.20162 1.21025 0.95474 0.94349 0.87297 1.21910 1.01547 0.98662 0.97875 1.22081 1.02309 0.97960 0.98837 1.21121 0.93949 0.98026 1.00077 1.20984 0.94206 0.97268 1.01357 0.91578 0.91825 0.91845 0.86500 0.86101 0.90355 0.90707 0.91167 0.90943 0.92833 0.91735 0.92001 0.94224 0.92597 0.93410 0.93429 0.92074 0.85978 0.86464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.10 -1.21 5.88 -104.62 -0.62 -1.83 16 3 C -0.12 -1.47 9.70 -39.58 -0.38 -1.86 16 4 C -0.12 -1.59 9.70 -39.59 -0.38 -1.97 16 5 C -0.07 -1.11 5.13 -104.62 -0.54 -1.65 16 6 C -0.06 -1.13 4.63 -27.88 -0.13 -1.26 16 7 C -0.12 -2.42 4.00 -27.89 -0.11 -2.53 16 8 C 0.47 11.98 6.98 -10.99 -0.08 11.90 16 9 O -0.54 -15.85 13.61 5.54 0.08 -15.77 16 10 N -0.45 -11.20 2.45 -107.73 -0.26 -11.47 16 11 C -0.34 -9.43 7.94 -14.93 -0.12 -9.55 16 12 H 0.07 1.98 7.05 -52.48 -0.37 1.61 16 13 C 0.07 2.10 4.31 -17.47 -0.08 2.02 16 14 N -0.83 -24.73 11.70 55.50 0.65 -24.08 16 15 Si 0.91 22.25 29.60 -169.99 -5.03 17.22 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 C 0.12 2.44 3.15 -67.93 -0.21 2.23 16 20 C -0.14 -2.70 8.99 37.16 0.33 -2.36 16 21 C -0.15 -2.65 9.25 37.16 0.34 -2.31 16 22 C -0.11 -1.62 9.70 -39.59 -0.38 -2.00 16 23 C -0.12 -1.50 9.70 -39.59 -0.38 -1.88 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 26 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 27 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 28 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 29 H 0.08 1.55 8.05 -51.93 -0.42 1.13 16 30 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 31 H 0.07 1.23 7.88 -51.93 -0.41 0.82 16 32 H 0.07 1.36 7.70 -51.92 -0.40 0.96 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.06 1.16 5.79 -51.93 -0.30 0.86 16 35 H 0.06 1.24 7.76 -51.93 -0.40 0.84 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 1.12 7.14 -51.93 -0.37 0.75 16 41 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 42 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 344.58 15.07 5.19 5.19 Total: -1.00 -32.40 344.58 -8.62 -41.02 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.87 Total: 1.54 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -2.38 Total: -13.65 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.38 Total: -35.55 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.08 Total: -15.77 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.40 -8.62 -41.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080212708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.591 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds