Wall clock time and date at job start Mon Mar 30 2020 07:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38240 * 119.99704 * 2 1 4 4 C 1.38237 * 119.99524 * 179.97438 * 3 2 1 5 5 C 1.38229 * 120.00067 * 0.25708 * 4 3 2 6 6 C 1.50707 * 120.00184 * 179.72726 * 5 4 3 7 7 C 1.52992 * 109.47315 * 89.99417 * 6 5 4 8 8 C 1.50697 * 109.47442 * 180.02562 * 7 6 5 9 9 O 1.21299 * 119.99852 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00376 * 180.02562 * 8 7 6 11 11 C 1.37102 * 119.99759 * 180.02562 * 10 8 7 12 12 H 1.08004 * 119.99758 * 137.92149 * 11 10 8 13 13 C 1.38944 * 120.00126 * 317.92267 * 11 10 8 14 14 N 1.31412 * 120.00268 * 339.60965 * 13 11 10 15 15 Si 1.86809 * 119.99930 * 159.60828 * 13 11 10 16 16 H 1.48499 * 109.47070 * 59.99885 * 15 13 11 17 17 H 1.48493 * 109.46970 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46797 * 300.00172 * 15 13 11 19 19 C 1.46493 * 120.00076 * 0.02562 * 10 8 7 20 20 C 1.52998 * 109.47362 * 124.51044 * 19 10 8 21 21 C 1.53001 * 109.47150 * 244.51180 * 19 10 8 22 22 C 1.38237 * 120.00235 * 359.48570 * 5 4 3 23 23 C 1.38229 * 119.99604 * 0.48970 * 22 5 4 24 24 H 1.08999 * 109.46571 * 89.99909 * 1 2 3 25 25 H 1.08998 * 109.47399 * 210.00072 * 1 2 3 26 26 H 1.09006 * 109.47109 * 330.00428 * 1 2 3 27 27 H 1.08001 * 120.00305 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.00141 * 179.97438 * 4 3 2 29 29 H 1.08996 * 109.47171 * 210.00014 * 6 5 4 30 30 H 1.09007 * 109.46849 * 329.99873 * 6 5 4 31 31 H 1.08996 * 109.47489 * 300.00402 * 7 6 5 32 32 H 1.09009 * 109.47302 * 60.00389 * 7 6 5 33 33 H 0.96998 * 120.00207 * 179.97438 * 14 13 11 34 34 H 1.09002 * 109.47206 * 4.50894 * 19 10 8 35 35 H 1.08994 * 109.46790 * 65.53095 * 20 19 10 36 36 H 1.08998 * 109.47358 * 185.53048 * 20 19 10 37 37 H 1.09000 * 109.46859 * 305.53154 * 20 19 10 38 38 H 1.09003 * 109.47155 * 61.66834 * 21 19 10 39 39 H 1.09004 * 109.47055 * 181.66736 * 21 19 10 40 40 H 1.08997 * 109.47248 * 301.66457 * 21 19 10 41 41 H 1.07996 * 120.00180 * 180.25783 * 22 5 4 42 42 H 1.08009 * 119.99995 * 179.76144 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 0.0001 -0.0043 6 6 5.7787 0.0000 -0.0099 7 6 6.2941 -0.0026 1.4306 8 6 7.8011 -0.0020 1.4250 9 8 8.4037 0.0007 0.3722 10 7 8.4794 -0.0045 2.5896 11 6 9.8504 -0.0035 2.5844 12 1 10.3925 0.6220 3.2782 13 6 10.5423 -0.8069 1.6865 14 7 9.9458 -1.8391 1.1335 15 14 12.3207 -0.4200 1.2654 16 1 13.1440 -0.4704 2.5002 17 1 12.8273 -1.4194 0.2909 18 1 12.4042 0.9378 0.6699 19 6 7.7517 -0.0084 3.8610 20 6 8.2086 -1.1989 4.7066 21 6 8.0362 1.2920 4.6154 22 6 3.5805 -1.1971 0.0011 23 6 2.1983 -1.1971 0.0011 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8901 0.5138 27 1 1.6582 2.1325 -0.0004 28 1 4.1206 2.1325 0.0001 29 1 6.1401 -0.8890 -0.5268 30 1 6.1401 0.8910 -0.5235 31 1 5.9328 0.8864 1.9474 32 1 5.9327 -0.8935 1.9442 33 1 10.4287 -2.3998 0.5064 34 1 6.6821 -0.0895 3.6673 35 1 9.2548 -1.0680 4.9829 36 1 7.5994 -1.2591 5.6084 37 1 8.0970 -2.1176 4.1307 38 1 7.6837 2.1385 4.0260 39 1 7.5184 1.2764 5.5745 40 1 9.1089 1.3875 4.7832 41 1 4.1205 -2.1324 0.0015 42 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080212708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:56 Heat of formation + Delta-G solvation = -38.499422 kcal Electronic energy + Delta-G solvation = -21295.048745 eV Core-core repulsion = 18238.905516 eV Total energy + Delta-G solvation = -3056.143229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.64685 -40.02963 -37.04426 -35.45056 -34.23561 -32.05588 -31.77391 -31.58558 -28.36517 -27.85561 -26.54718 -24.29567 -23.55919 -22.26941 -21.56997 -20.66772 -18.28691 -17.46955 -16.95758 -16.64292 -16.44728 -15.90427 -15.81519 -15.62641 -14.76284 -14.66748 -14.42835 -14.34321 -14.18232 -13.74082 -13.48417 -13.31417 -13.26927 -13.05545 -12.86505 -12.81757 -12.58753 -12.51674 -12.31610 -12.15674 -11.99231 -11.94010 -11.81167 -11.66032 -11.48697 -10.72374 -9.97817 -9.78915 -9.32452 -9.02454 -8.15545 -5.88804 0.45237 0.53894 1.36970 1.45501 1.48728 2.32133 2.53639 2.84745 3.21156 3.32127 3.87279 3.93546 4.13048 4.15790 4.19875 4.23277 4.27653 4.42702 4.47336 4.58381 4.62143 4.64172 4.73645 4.88286 4.89929 4.91740 5.01024 5.02271 5.06167 5.11651 5.17648 5.24423 5.26725 5.36438 5.47405 5.56533 5.58484 5.61763 5.74219 5.82089 6.18109 6.26769 7.11151 7.29927 7.79143 8.45173 8.93557 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024586 B = 0.004301 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.604842 B = 6507.933166 C = 7035.079696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.100 4.100 3 C -0.122 4.122 4 C -0.122 4.122 5 C -0.092 4.092 6 C -0.050 4.050 7 C -0.108 4.108 8 C 0.456 3.544 9 O -0.592 6.592 10 N -0.464 5.464 11 C -0.351 4.351 12 H 0.078 0.922 13 C 0.022 3.978 14 N -0.868 5.868 15 Si 0.961 3.039 16 H -0.257 1.257 17 H -0.291 1.291 18 H -0.284 1.284 19 C 0.113 3.887 20 C -0.133 4.133 21 C -0.145 4.145 22 C -0.127 4.127 23 C -0.124 4.124 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.144 0.856 28 H 0.127 0.873 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.255 0.745 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.083 0.917 37 H 0.026 0.974 38 H 0.047 0.953 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.116 0.884 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.932 3.841 3.367 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.100 4.100 3 C -0.140 4.140 4 C -0.140 4.140 5 C -0.092 4.092 6 C -0.088 4.088 7 C -0.148 4.148 8 C 0.245 3.755 9 O -0.474 6.474 10 N -0.186 5.186 11 C -0.479 4.479 12 H 0.096 0.904 13 C -0.184 4.184 14 N -0.503 5.503 15 Si 0.787 3.213 16 H -0.182 1.182 17 H -0.217 1.217 18 H -0.210 1.210 19 C 0.010 3.990 20 C -0.191 4.191 21 C -0.203 4.203 22 C -0.146 4.146 23 C -0.142 4.142 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.162 0.838 28 H 0.145 0.855 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.045 0.955 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.134 0.866 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.602 3.682 2.757 18.193 hybrid contribution 1.552 -0.262 -0.565 1.672 sum -16.050 3.420 2.192 16.556 Atomic orbital electron populations 1.20814 0.89043 1.03706 1.03035 1.20290 0.97647 0.92790 0.99269 1.21295 0.93495 0.98716 1.00481 1.21213 0.94981 0.97390 1.00457 1.19900 0.94459 0.94287 1.00599 1.20091 0.90912 1.02019 0.95772 1.21437 0.91933 1.03392 0.98067 1.20873 0.89878 0.80487 0.84226 1.90465 1.71431 1.53073 1.32452 1.43687 1.05060 1.66040 1.03815 1.19056 0.81777 1.24132 1.22917 0.90430 1.25922 1.02021 0.93239 0.97180 1.69982 1.39040 1.13721 1.27578 0.85515 0.80030 0.77400 0.78364 1.18192 1.21689 1.20966 1.21371 0.96149 0.96107 0.85401 1.21836 1.01378 0.96887 0.99045 1.21997 1.01736 0.96212 1.00345 1.21190 0.95095 0.97459 1.00811 1.21258 0.93384 0.98817 1.00721 0.90429 0.90724 0.90464 0.83840 0.85533 0.93300 0.92096 0.88618 0.90115 0.93611 0.89562 0.93695 0.89814 0.95467 0.93344 0.89476 0.93727 0.86570 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.01 71.24 0.71 -0.73 16 2 C -0.10 -2.04 5.88 -19.86 -0.12 -2.16 16 3 C -0.12 -2.62 9.70 22.27 0.22 -2.40 16 4 C -0.12 -3.20 9.70 22.27 0.22 -2.99 16 5 C -0.09 -2.82 5.13 -19.86 -0.10 -2.92 16 6 C -0.05 -1.88 4.63 29.85 0.14 -1.74 16 7 C -0.11 -4.22 4.00 29.84 0.12 -4.11 16 8 C 0.46 23.70 6.98 87.66 0.61 24.31 16 9 O -0.59 -36.47 13.61 -3.09 -0.04 -36.51 16 10 N -0.46 -23.29 2.45 -613.14 -1.50 -24.80 16 11 C -0.35 -19.56 7.94 84.04 0.67 -18.89 16 12 H 0.08 4.17 7.05 -2.91 -0.02 4.15 16 13 C 0.02 1.30 4.31 84.92 0.37 1.67 16 14 N -0.87 -53.79 11.70 21.66 0.25 -53.54 16 15 Si 0.96 46.82 29.60 68.60 2.03 48.85 16 16 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 17 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 18 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 19 C 0.11 4.32 3.15 44.99 0.14 4.46 16 20 C -0.13 -4.91 8.99 71.98 0.65 -4.26 16 21 C -0.14 -4.64 9.25 71.98 0.67 -3.98 16 22 C -0.13 -3.58 9.70 22.27 0.22 -3.36 16 23 C -0.12 -2.82 9.70 22.27 0.22 -2.61 16 24 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 26 H 0.08 0.84 8.09 -2.38 -0.02 0.82 16 27 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 28 H 0.13 3.07 8.06 -2.91 -0.02 3.04 16 29 H 0.05 2.08 8.05 -2.39 -0.02 2.06 16 30 H 0.06 2.40 8.04 -2.38 -0.02 2.38 16 31 H 0.10 3.22 7.88 -2.39 -0.02 3.21 16 32 H 0.08 3.01 7.70 -2.38 -0.02 2.99 16 33 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 34 H 0.09 2.90 5.79 -2.39 -0.01 2.89 16 35 H 0.04 1.77 7.76 -2.39 -0.02 1.76 16 36 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 40 H 0.04 1.57 7.14 -2.39 -0.02 1.55 16 41 H 0.12 3.28 8.06 -2.91 -0.02 3.26 16 42 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -73.50 344.58 6.43 -67.07 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.98 Total: 18.64 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 4.72 Total: -19.71 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -1.25 Total: -78.33 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -0.04 Total: -36.51 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -73.50 6.43 -67.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080212708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.574 kcal (2) G-P(sol) polarization free energy of solvation -73.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds