Wall clock time and date at job start Mon Mar 30 2020 07:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47272 * 2 1 4 4 C 1.53008 * 109.46902 * 119.99746 * 2 1 3 5 5 C 1.52994 * 109.47064 * 65.00085 * 4 2 1 6 6 C 1.50707 * 109.46774 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00097 * 354.45796 * 6 5 4 8 8 N 1.34775 * 119.99667 * 174.45902 * 6 5 4 9 9 C 1.46506 * 120.00030 * 184.45100 * 8 6 5 10 10 C 1.50707 * 109.47103 * 270.00389 * 9 8 6 11 11 H 1.07998 * 119.99957 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99566 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99583 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00402 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47238 * 89.99541 * 14 12 10 16 16 H 1.48498 * 109.47115 * 210.00193 * 14 12 10 17 17 H 1.48506 * 109.46916 * 329.99775 * 14 12 10 18 18 C 1.39923 * 120.00153 * 4.45919 * 8 6 5 19 19 C 1.38872 * 120.07336 * 66.79372 * 18 8 6 20 20 C 1.38113 * 119.92646 * 179.97438 * 19 18 8 21 21 C 1.38284 * 120.07236 * 359.97313 * 20 19 18 22 22 C 1.38277 * 120.14310 * 0.04475 * 21 20 19 23 23 C 1.38117 * 120.06854 * 359.96101 * 22 21 20 24 24 H 1.09001 * 109.47119 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47392 * 300.00597 * 1 2 3 26 26 H 1.09000 * 109.46933 * 60.00434 * 1 2 3 27 27 H 1.08998 * 109.47392 * 239.99402 * 2 1 3 28 28 H 1.08998 * 109.47512 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46787 * 299.99655 * 3 2 1 30 30 H 1.08998 * 109.47399 * 59.99407 * 3 2 1 31 31 H 1.09004 * 109.46888 * 304.99602 * 4 2 1 32 32 H 1.09001 * 109.46698 * 185.00447 * 4 2 1 33 33 H 1.08998 * 109.47255 * 60.00090 * 5 4 2 34 34 H 1.08998 * 109.47196 * 299.99573 * 5 4 2 35 35 H 1.09001 * 109.46670 * 30.00181 * 9 8 6 36 36 H 1.08996 * 109.47328 * 150.00546 * 9 8 6 37 37 H 0.97000 * 120.00347 * 180.02562 * 13 12 10 38 38 H 1.07996 * 120.03472 * 359.70196 * 19 18 8 39 39 H 1.07998 * 119.96255 * 179.97438 * 20 19 18 40 40 H 1.08010 * 119.92736 * 180.02562 * 21 20 19 41 41 H 1.07999 * 119.96673 * 179.97438 * 22 21 20 42 42 H 1.07999 * 120.03237 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1881 6 6 2.1370 -2.9056 2.4190 7 8 2.8420 -2.3189 3.2126 8 7 1.8023 -4.1926 2.6378 9 6 2.2080 -4.8539 3.8806 10 6 3.5560 -5.5000 3.6889 11 1 4.0602 -5.4252 2.7368 12 6 4.1460 -6.1858 4.7294 13 7 5.3225 -6.7491 4.5623 14 14 3.2742 -6.3147 6.3765 15 1 2.4183 -7.5280 6.3899 16 1 4.2814 -6.4071 7.4637 17 1 2.4298 -5.1110 6.5851 18 6 1.0674 -4.8974 1.6781 19 6 1.6339 -5.1894 0.4442 20 6 0.9059 -5.8857 -0.5007 21 6 -0.3854 -6.2923 -0.2191 22 6 -0.9525 -6.0028 1.0084 23 6 -0.2299 -5.3068 1.9576 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6053 -0.2616 2.1370 32 1 3.1263 -0.6442 1.2953 33 1 2.0698 -2.6550 0.3004 34 1 0.5489 -2.2723 1.1422 35 1 2.2690 -4.1168 4.6812 36 1 1.4741 -5.6158 4.1432 37 1 5.7375 -7.2319 5.2942 38 1 2.6409 -4.8686 0.2223 39 1 1.3458 -6.1127 -1.4606 40 1 -0.9524 -6.8370 -0.9596 41 1 -1.9613 -6.3214 1.2252 42 1 -0.6735 -5.0806 2.9159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020252399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:42 Heat of formation + Delta-G solvation = -26.111629 kcal Electronic energy + Delta-G solvation = -21488.985521 eV Core-core repulsion = 18433.379468 eV Total energy + Delta-G solvation = -3055.606054 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.01391 -38.26273 -36.53098 -34.88312 -32.63374 -31.03342 -30.57310 -29.54693 -27.69578 -27.20544 -24.50815 -22.57903 -22.36086 -21.69211 -19.85944 -18.97071 -17.02188 -16.93178 -16.08446 -15.66267 -15.44220 -14.83520 -14.47606 -14.21759 -14.07411 -13.85128 -13.33553 -13.18646 -12.89392 -12.54216 -12.41413 -12.31518 -12.23524 -11.82004 -11.68905 -11.36816 -11.33028 -10.98930 -10.90048 -10.69571 -10.59231 -10.56088 -10.44600 -10.19061 -9.57261 -9.33986 -8.72203 -8.60847 -8.59342 -7.69605 -6.08861 -4.07508 1.52860 1.61304 3.26265 3.26674 3.33912 3.37441 3.69516 4.00383 4.38985 4.76053 4.88989 4.91799 5.13566 5.14256 5.16044 5.25431 5.31835 5.41647 5.50289 5.58632 5.64137 5.70014 5.74858 5.78401 5.80118 5.90733 6.01740 6.08780 6.10201 6.21787 6.22628 6.41735 6.50358 6.54856 6.64296 6.70061 6.75625 6.92472 7.06248 7.34840 7.58333 8.21783 8.45001 8.87622 8.94937 9.50478 11.04589 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013786 B = 0.006164 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.622671 B = 4541.482222 C = 5871.147378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.099 4.099 5 C -0.139 4.139 6 C 0.513 3.487 7 O -0.526 6.526 8 N -0.560 5.560 9 C 0.218 3.782 10 C -0.526 4.526 11 H 0.075 0.925 12 C 0.074 3.926 13 N -0.896 5.896 14 Si 0.873 3.127 15 H -0.275 1.275 16 H -0.283 1.283 17 H -0.264 1.264 18 C 0.165 3.835 19 C -0.119 4.119 20 C -0.108 4.108 21 C -0.134 4.134 22 C -0.110 4.110 23 C -0.129 4.129 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.027 0.973 37 H 0.265 0.735 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.438 7.726 -11.440 19.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.137 4.137 5 C -0.180 4.180 6 C 0.301 3.699 7 O -0.402 6.402 8 N -0.288 5.288 9 C 0.099 3.901 10 C -0.564 4.564 11 H 0.093 0.907 12 C -0.129 4.129 13 N -0.535 5.535 14 Si 0.700 3.300 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.189 1.189 18 C 0.073 3.927 19 C -0.139 4.139 20 C -0.127 4.127 21 C -0.152 4.152 22 C -0.129 4.129 23 C -0.149 4.149 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.061 0.939 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.878 7.963 -10.849 18.626 hybrid contribution -0.230 -0.477 0.920 1.062 sum -13.108 7.486 -9.928 18.067 Atomic orbital electron populations 1.21904 0.95488 1.01851 1.01414 1.21142 0.95746 0.96202 0.98523 1.21821 1.01116 0.95987 1.01423 1.21409 1.01947 0.92873 0.97464 1.21782 1.02390 0.96611 0.97169 1.20567 0.80269 0.81328 0.87709 1.90678 1.36067 1.65794 1.47622 1.45671 1.52748 1.10652 1.19703 1.19778 0.96204 0.92778 0.81383 1.21251 1.01693 1.32910 1.00578 0.90702 1.24822 0.94742 0.94887 0.98424 1.69887 1.15623 1.35270 1.32676 0.86889 0.79937 0.78981 0.84225 1.20036 1.20824 1.18881 1.17693 0.90264 0.95323 0.89415 1.21382 0.99709 0.99030 0.93771 1.20990 0.94484 0.98164 0.99062 1.21063 0.95771 1.01251 0.97133 1.20944 0.99661 0.98665 0.93599 1.21279 0.93389 1.00232 1.00011 0.92416 0.92752 0.93046 0.91264 0.92616 0.92990 0.92722 0.91468 0.91029 0.89230 0.89464 0.93874 0.95540 0.92541 0.85794 0.86039 0.86359 0.86135 0.85984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.95 37.16 0.33 -1.11 16 2 C -0.10 -1.05 2.92 -90.62 -0.26 -1.31 16 3 C -0.15 -1.42 9.19 37.16 0.34 -1.08 16 4 C -0.10 -1.37 3.99 -26.73 -0.11 -1.48 16 5 C -0.14 -2.10 4.12 -27.88 -0.11 -2.21 16 6 C 0.51 10.59 7.53 -10.98 -0.08 10.51 16 7 O -0.53 -12.96 15.61 5.55 0.09 -12.87 16 8 N -0.56 -11.92 2.51 -114.73 -0.29 -12.20 16 9 C 0.22 5.45 4.14 -5.19 -0.02 5.43 16 10 C -0.53 -15.38 9.94 -34.44 -0.34 -15.72 16 11 H 0.07 2.40 8.06 -52.49 -0.42 1.98 16 12 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 13 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16 14 Si 0.87 21.77 27.47 -169.99 -4.67 17.10 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 16 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 18 C 0.17 2.95 4.42 -83.69 -0.37 2.58 16 19 C -0.12 -1.93 8.46 -39.39 -0.33 -2.27 16 20 C -0.11 -1.43 10.04 -39.61 -0.40 -1.82 16 21 C -0.13 -1.61 10.04 -39.55 -0.40 -2.01 16 22 C -0.11 -1.39 10.04 -39.61 -0.40 -1.79 16 23 C -0.13 -1.99 9.64 -39.39 -0.38 -2.37 16 24 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.10 8.04 -51.93 -0.42 0.68 16 33 H 0.09 1.25 6.99 -51.93 -0.36 0.89 16 34 H 0.09 1.17 6.44 -51.93 -0.33 0.84 16 35 H 0.04 1.14 6.54 -51.93 -0.34 0.80 16 36 H 0.03 0.63 7.25 -51.93 -0.38 0.26 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 38 H 0.12 2.07 7.90 -52.49 -0.41 1.66 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 344.52 15.07 5.19 5.19 Total: -1.00 -33.41 344.52 -8.36 -41.78 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.83 Total: 0.76 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -2.63 Total: -12.59 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.49 Total: -39.37 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.09 Total: -12.87 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.41 -8.36 -41.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020252399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.665 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds