Wall clock time and date at job start Mon Mar 30 2020 07:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47272 * 2 1 4 4 C 1.53008 * 109.46902 * 119.99746 * 2 1 3 5 5 C 1.52994 * 109.47064 * 65.00085 * 4 2 1 6 6 C 1.50707 * 109.46774 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00097 * 354.45796 * 6 5 4 8 8 N 1.34775 * 119.99667 * 174.45902 * 6 5 4 9 9 C 1.46506 * 120.00030 * 184.45100 * 8 6 5 10 10 C 1.50707 * 109.47103 * 270.00389 * 9 8 6 11 11 H 1.07998 * 119.99957 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99566 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99583 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00402 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47238 * 89.99541 * 14 12 10 16 16 H 1.48498 * 109.47115 * 210.00193 * 14 12 10 17 17 H 1.48506 * 109.46916 * 329.99775 * 14 12 10 18 18 C 1.39923 * 120.00153 * 4.45919 * 8 6 5 19 19 C 1.38872 * 120.07336 * 66.79372 * 18 8 6 20 20 C 1.38113 * 119.92646 * 179.97438 * 19 18 8 21 21 C 1.38284 * 120.07236 * 359.97313 * 20 19 18 22 22 C 1.38277 * 120.14310 * 0.04475 * 21 20 19 23 23 C 1.38117 * 120.06854 * 359.96101 * 22 21 20 24 24 H 1.09001 * 109.47119 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47392 * 300.00597 * 1 2 3 26 26 H 1.09000 * 109.46933 * 60.00434 * 1 2 3 27 27 H 1.08998 * 109.47392 * 239.99402 * 2 1 3 28 28 H 1.08998 * 109.47512 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46787 * 299.99655 * 3 2 1 30 30 H 1.08998 * 109.47399 * 59.99407 * 3 2 1 31 31 H 1.09004 * 109.46888 * 304.99602 * 4 2 1 32 32 H 1.09001 * 109.46698 * 185.00447 * 4 2 1 33 33 H 1.08998 * 109.47255 * 60.00090 * 5 4 2 34 34 H 1.08998 * 109.47196 * 299.99573 * 5 4 2 35 35 H 1.09001 * 109.46670 * 30.00181 * 9 8 6 36 36 H 1.08996 * 109.47328 * 150.00546 * 9 8 6 37 37 H 0.97000 * 120.00347 * 180.02562 * 13 12 10 38 38 H 1.07996 * 120.03472 * 359.70196 * 19 18 8 39 39 H 1.07998 * 119.96255 * 179.97438 * 20 19 18 40 40 H 1.08010 * 119.92736 * 180.02562 * 21 20 19 41 41 H 1.07999 * 119.96673 * 179.97438 * 22 21 20 42 42 H 1.07999 * 120.03237 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1881 6 6 2.1370 -2.9056 2.4190 7 8 2.8420 -2.3189 3.2126 8 7 1.8023 -4.1926 2.6378 9 6 2.2080 -4.8539 3.8806 10 6 3.5560 -5.5000 3.6889 11 1 4.0602 -5.4252 2.7368 12 6 4.1460 -6.1858 4.7294 13 7 5.3225 -6.7491 4.5623 14 14 3.2742 -6.3147 6.3765 15 1 2.4183 -7.5280 6.3899 16 1 4.2814 -6.4071 7.4637 17 1 2.4298 -5.1110 6.5851 18 6 1.0674 -4.8974 1.6781 19 6 1.6339 -5.1894 0.4442 20 6 0.9059 -5.8857 -0.5007 21 6 -0.3854 -6.2923 -0.2191 22 6 -0.9525 -6.0028 1.0084 23 6 -0.2299 -5.3068 1.9576 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6053 -0.2616 2.1370 32 1 3.1263 -0.6442 1.2953 33 1 2.0698 -2.6550 0.3004 34 1 0.5489 -2.2723 1.1422 35 1 2.2690 -4.1168 4.6812 36 1 1.4741 -5.6158 4.1432 37 1 5.7375 -7.2319 5.2942 38 1 2.6409 -4.8686 0.2223 39 1 1.3458 -6.1127 -1.4606 40 1 -0.9524 -6.8370 -0.9596 41 1 -1.9613 -6.3214 1.2252 42 1 -0.6735 -5.0806 2.9159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020252399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:41 Heat of formation + Delta-G solvation = -45.400914 kcal Electronic energy + Delta-G solvation = -21489.821967 eV Core-core repulsion = 18433.379468 eV Total energy + Delta-G solvation = -3056.442500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.48630 -39.56892 -37.58809 -36.50060 -34.78418 -32.35115 -31.71607 -30.98206 -29.41665 -27.97689 -25.95735 -24.15689 -23.52319 -23.16036 -20.81788 -20.40026 -19.16829 -18.42664 -17.50365 -17.05266 -16.89557 -16.12030 -15.95138 -15.59943 -15.35178 -14.93973 -14.70024 -14.37923 -14.29169 -14.22191 -13.76856 -13.60056 -13.51232 -13.16876 -13.03675 -12.66812 -12.56633 -12.43918 -12.20935 -12.15857 -11.97087 -11.79466 -11.67378 -11.51802 -11.46322 -10.94735 -10.86331 -10.11536 -9.81729 -9.20642 -8.38259 -6.43797 0.36642 0.51408 1.27421 1.31894 1.42306 1.65835 2.15817 2.26951 2.87421 2.95838 3.56056 3.87175 3.94608 4.07314 4.13411 4.15799 4.31346 4.33956 4.48445 4.56073 4.59590 4.61533 4.71502 4.79340 4.82907 4.85361 4.88594 4.94389 5.06782 5.13974 5.15936 5.19640 5.31684 5.36692 5.40722 5.49620 5.53278 5.55407 5.63961 5.74210 6.06877 6.17959 6.55730 6.64269 7.15017 7.30040 8.78961 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013786 B = 0.006164 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.622671 B = 4541.482222 C = 5871.147378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.095 4.095 5 C -0.121 4.121 6 C 0.501 3.499 7 O -0.581 6.581 8 N -0.564 5.564 9 C 0.228 3.772 10 C -0.535 4.535 11 H 0.025 0.975 12 C 0.013 3.987 13 N -0.943 5.943 14 Si 0.947 3.053 15 H -0.251 1.251 16 H -0.277 1.277 17 H -0.255 1.255 18 C 0.125 3.875 19 C -0.138 4.138 20 C -0.105 4.105 21 C -0.119 4.119 22 C -0.101 4.101 23 C -0.138 4.138 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.025 0.975 36 H 0.044 0.956 37 H 0.270 0.730 38 H 0.102 0.898 39 H 0.148 0.852 40 H 0.159 0.841 41 H 0.157 0.843 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.067 7.089 -12.768 22.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.203 4.203 4 C -0.133 4.133 5 C -0.161 4.161 6 C 0.292 3.708 7 O -0.460 6.460 8 N -0.290 5.290 9 C 0.107 3.893 10 C -0.574 4.574 11 H 0.044 0.956 12 C -0.185 4.185 13 N -0.583 5.583 14 Si 0.769 3.231 15 H -0.175 1.175 16 H -0.203 1.203 17 H -0.179 1.179 18 C 0.035 3.965 19 C -0.158 4.158 20 C -0.123 4.123 21 C -0.137 4.137 22 C -0.119 4.119 23 C -0.157 4.157 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.043 0.957 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.166 0.834 40 H 0.177 0.823 41 H 0.175 0.825 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.544 7.313 -12.228 21.834 hybrid contribution 0.918 -0.337 1.185 1.536 sum -15.626 6.976 -11.043 20.367 Atomic orbital electron populations 1.21890 0.94147 1.02143 1.02252 1.21109 0.96791 0.96384 0.96726 1.21824 1.00772 0.95436 1.02292 1.21395 1.00484 0.92490 0.98971 1.21741 1.03501 0.96428 0.94386 1.21634 0.79296 0.81208 0.88676 1.90633 1.38608 1.66980 1.49809 1.45622 1.53002 1.11039 1.19373 1.19399 0.94353 0.92415 0.83144 1.21441 1.03590 1.33530 0.98826 0.95630 1.25841 0.95500 0.94203 1.03001 1.70043 1.17537 1.36393 1.34352 0.85721 0.79039 0.80083 0.78237 1.17495 1.20267 1.17915 1.17976 0.91470 0.97640 0.89453 1.21358 0.99386 1.00635 0.94375 1.21313 0.94985 0.96739 0.99268 1.21559 0.95052 0.99520 0.97526 1.21365 1.00829 0.96830 0.92897 1.21416 0.92559 1.00671 1.01071 0.92374 0.92962 0.91189 0.90468 0.93275 0.91015 0.92929 0.92630 0.93417 0.88125 0.87143 0.95692 0.93793 0.92149 0.87957 0.83400 0.82302 0.82536 0.85755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.95 71.98 0.64 -1.87 16 2 C -0.09 -1.86 2.92 -10.79 -0.03 -1.89 16 3 C -0.15 -2.69 9.19 71.98 0.66 -2.03 16 4 C -0.10 -2.72 3.99 30.59 0.12 -2.60 16 5 C -0.12 -3.71 4.12 29.85 0.12 -3.59 16 6 C 0.50 21.82 7.53 87.66 0.66 22.48 16 7 O -0.58 -30.63 15.61 -3.04 -0.05 -30.68 16 8 N -0.56 -24.97 2.51 -635.28 -1.59 -26.56 16 9 C 0.23 11.79 4.14 85.63 0.35 12.14 16 10 C -0.54 -32.98 9.94 25.60 0.25 -32.73 16 11 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 12 C 0.01 0.77 5.47 84.65 0.46 1.24 16 13 N -0.94 -61.06 13.96 21.45 0.30 -60.77 16 14 Si 0.95 45.54 27.47 68.60 1.88 47.42 16 15 H -0.25 -11.06 7.11 99.48 0.71 -10.36 16 16 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 17 H -0.26 -11.81 6.54 99.48 0.65 -11.16 16 18 C 0.13 4.48 4.42 38.15 0.17 4.65 16 19 C -0.14 -4.47 8.46 22.39 0.19 -4.28 16 20 C -0.10 -2.47 10.04 22.25 0.22 -2.24 16 21 C -0.12 -2.29 10.04 22.29 0.22 -2.06 16 22 C -0.10 -2.13 10.04 22.25 0.22 -1.90 16 23 C -0.14 -3.97 9.64 22.39 0.22 -3.76 16 24 H 0.06 0.98 6.56 -2.39 -0.02 0.97 16 25 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.05 1.56 8.04 -2.39 -0.02 1.54 16 33 H 0.10 2.86 6.99 -2.39 -0.02 2.85 16 34 H 0.11 2.87 6.44 -2.39 -0.02 2.85 16 35 H 0.03 1.37 6.54 -2.39 -0.02 1.36 16 36 H 0.04 2.10 7.25 -2.39 -0.02 2.08 16 37 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 38 H 0.10 3.65 7.90 -2.91 -0.02 3.62 16 39 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 41 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 42 H 0.12 3.45 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -78.47 344.52 5.96 -72.52 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.92 Total: 16.51 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 4.50 Total: -18.44 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -1.30 Total: -87.33 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.05 Total: -30.68 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.42 kcal Total: -78.47 5.96 -72.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020252399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.114 kcal (2) G-P(sol) polarization free energy of solvation -78.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds