Wall clock time and date at job start Mon Mar 30 2020 07:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47136 * 2 1 4 4 N 1.46906 * 109.46936 * 119.99680 * 2 1 3 5 5 C 1.46900 * 110.99946 * 306.40872 * 4 2 1 6 6 C 1.50691 * 109.47290 * 287.25793 * 5 4 2 7 7 H 1.07999 * 120.00307 * 357.82630 * 6 5 4 8 8 C 1.37881 * 120.00073 * 177.82103 * 6 5 4 9 9 N 1.31514 * 120.00004 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 120.00058 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47113 * 59.99962 * 10 8 6 12 12 H 1.48492 * 109.47069 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46748 * 300.00213 * 10 8 6 14 14 C 1.46897 * 110.99807 * 70.36227 * 4 2 1 15 15 C 1.50702 * 109.47305 * 76.30861 * 14 4 2 16 16 O 1.20761 * 119.99536 * 357.45221 * 15 14 4 17 17 C 1.50696 * 120.00162 * 177.45437 * 15 14 4 18 18 C 1.50706 * 109.46965 * 179.97438 * 17 15 14 19 19 C 1.38236 * 119.99817 * 89.99850 * 18 17 15 20 20 C 1.38234 * 119.99720 * 179.97438 * 19 18 17 21 21 C 1.38244 * 120.00012 * 359.97438 * 20 19 18 22 22 C 1.38230 * 119.99875 * 0.27660 * 21 20 19 23 23 C 1.38235 * 119.99607 * 269.97463 * 18 17 15 24 24 H 1.09004 * 109.47488 * 308.12443 * 1 2 3 25 25 H 1.08999 * 109.47122 * 68.12327 * 1 2 3 26 26 H 1.09006 * 109.47362 * 188.11974 * 1 2 3 27 27 H 1.08996 * 109.47211 * 239.99210 * 2 1 3 28 28 H 1.09005 * 109.46993 * 171.58838 * 3 2 1 29 29 H 1.09000 * 109.46871 * 291.58511 * 3 2 1 30 30 H 1.08993 * 109.47223 * 51.58623 * 3 2 1 31 31 H 1.09009 * 109.47034 * 47.25954 * 5 4 2 32 32 H 1.08998 * 109.47138 * 167.25565 * 5 4 2 33 33 H 0.96998 * 119.99546 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.47364 * 316.30171 * 14 4 2 35 35 H 1.09005 * 109.46865 * 196.30388 * 14 4 2 36 36 H 1.08998 * 109.46976 * 59.99953 * 17 15 14 37 37 H 1.09002 * 109.47401 * 299.99643 * 17 15 14 38 38 H 1.07994 * 120.00332 * 359.97438 * 19 18 17 39 39 H 1.08000 * 120.00010 * 180.02562 * 20 19 18 40 40 H 1.07997 * 119.99915 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.00046 * 179.72330 * 22 21 20 42 42 H 1.07995 * 120.00193 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.4276 -0.1204 2.4162 6 6 2.0390 1.2305 2.6850 7 1 2.8169 1.6094 2.0388 8 6 1.6051 1.9828 3.7559 9 7 0.6580 1.5213 4.5430 10 14 2.3625 3.6577 4.0887 11 1 2.1425 4.5422 2.9163 12 1 1.7271 4.2586 5.2888 13 1 3.8203 3.5034 4.3258 14 6 1.7605 -2.1360 1.1166 15 6 2.7549 -2.7719 0.1796 16 8 3.5635 -2.0862 -0.3986 17 6 2.7401 -4.2633 -0.0359 18 6 3.8254 -4.6407 -1.0110 19 6 5.0908 -4.9526 -0.5501 20 6 6.0861 -5.2993 -1.4445 21 6 5.8159 -5.3346 -2.7998 22 6 4.5519 -5.0177 -3.2610 23 6 3.5553 -4.6755 -2.3663 24 1 -0.3634 0.6345 0.8084 25 1 -0.3633 0.3829 -0.9536 26 1 -0.3634 -1.0174 0.1452 27 1 1.8933 -0.5139 -0.8899 28 1 3.1196 1.4461 0.1503 29 1 1.8046 1.9110 -0.9556 30 1 1.5591 1.9978 0.8052 31 1 0.3515 -0.0116 2.2801 32 1 1.6221 -0.7817 3.2605 33 1 0.3525 2.0508 5.2961 34 1 0.7504 -2.3030 0.7425 35 1 1.8592 -2.5803 2.1071 36 1 1.7718 -4.5629 -0.4367 37 1 2.9125 -4.7694 0.9140 38 1 5.3018 -4.9254 0.5087 39 1 7.0746 -5.5434 -1.0844 40 1 6.5934 -5.6059 -3.4986 41 1 4.3420 -5.0410 -4.3202 42 1 2.5667 -4.4318 -2.7263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050153557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:32 Heat of formation + Delta-G solvation = -0.771870 kcal Electronic energy + Delta-G solvation = -21242.340584 eV Core-core repulsion = 18187.833344 eV Total energy + Delta-G solvation = -3054.507239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -39.85804 -38.65272 -37.02946 -32.88893 -32.57209 -31.18979 -30.91613 -28.78788 -27.48541 -26.26243 -24.85514 -22.61399 -22.17832 -21.57925 -19.49274 -18.48358 -16.84237 -16.45724 -15.74448 -15.55661 -15.37290 -14.95641 -14.65915 -14.38064 -13.99133 -13.55254 -13.37868 -13.02652 -12.98270 -12.45725 -12.32665 -12.17946 -11.94271 -11.48809 -11.28342 -11.14662 -11.11468 -11.02758 -10.77351 -10.68973 -10.65396 -10.23271 -10.12632 -9.68223 -9.13268 -8.95334 -8.93312 -8.59881 -8.35399 -7.16158 -5.99544 -3.95831 1.31977 1.38975 2.41932 3.35868 3.39776 3.43569 3.70318 4.33009 4.50006 4.67749 4.78941 4.95826 5.03742 5.06506 5.24178 5.34807 5.44877 5.52785 5.60056 5.68191 5.73100 5.78869 5.86857 5.96852 6.01170 6.04893 6.11052 6.36738 6.41746 6.47054 6.57400 6.58194 6.66414 6.77698 6.97906 7.05966 7.22406 7.43498 7.52657 7.86627 7.99553 8.15749 8.24209 8.58370 9.09123 9.64056 11.11193 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028206 B = 0.003843 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.472028 B = 7285.099749 C = 7444.494193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.094 3.906 3 C -0.143 4.143 4 N -0.519 5.519 5 C 0.186 3.814 6 C -0.501 4.501 7 H 0.075 0.925 8 C 0.052 3.948 9 N -0.902 5.902 10 Si 0.893 3.107 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.001 3.999 15 C 0.353 3.647 16 O -0.423 6.423 17 C -0.136 4.136 18 C -0.066 4.066 19 C -0.108 4.108 20 C -0.119 4.119 21 C -0.126 4.126 22 C -0.120 4.120 23 C -0.110 4.110 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.026 0.974 30 H 0.094 0.906 31 H 0.007 0.993 32 H 0.023 0.977 33 H 0.260 0.740 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.312 -14.134 -11.690 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.015 4.015 3 C -0.200 4.200 4 N -0.242 5.242 5 C 0.061 3.939 6 C -0.540 4.540 7 H 0.093 0.907 8 C -0.148 4.148 9 N -0.542 5.542 10 Si 0.721 3.279 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.202 1.202 14 C -0.128 4.128 15 C 0.224 3.776 16 O -0.293 6.293 17 C -0.174 4.174 18 C -0.066 4.066 19 C -0.126 4.126 20 C -0.137 4.137 21 C -0.144 4.144 22 C -0.138 4.138 23 C -0.128 4.128 24 H 0.092 0.908 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.045 0.955 30 H 0.113 0.887 31 H 0.024 0.976 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.164 -13.620 -11.802 18.497 hybrid contribution -0.632 0.655 0.344 0.973 sum 3.532 -12.965 -11.458 17.659 Atomic orbital electron populations 1.22490 0.98997 1.00984 1.01841 1.21428 0.91314 0.96209 0.92538 1.22208 1.01879 0.95344 1.00540 1.62195 1.59402 0.98522 1.04130 1.19895 0.93688 0.95176 0.85120 1.21422 1.20150 1.01230 1.11164 0.90657 1.24976 0.95392 0.98356 0.96083 1.69946 1.29127 1.38094 1.17030 0.86637 0.79533 0.84183 0.77576 1.20207 1.21506 1.20222 1.22503 0.96874 0.93331 1.00088 1.24658 0.83415 0.89340 0.80156 1.90383 1.33423 1.65193 1.40308 1.21238 0.98979 0.96985 1.00212 1.19517 0.94668 0.98450 0.93964 1.21031 0.92645 0.99090 0.99837 1.21105 0.98994 1.00181 0.93453 1.21105 0.96841 1.00827 0.95660 1.21082 0.93446 0.99924 0.99383 1.20994 0.99439 0.99735 0.92682 0.90809 0.93560 0.93933 0.92293 0.92619 0.95502 0.88715 0.97578 0.95861 0.93030 0.92193 0.88319 0.87984 0.87738 0.86137 0.86201 0.86372 0.86278 0.86352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.37 8.32 37.16 0.31 -3.06 16 2 C 0.09 1.88 2.62 -67.71 -0.18 1.71 16 3 C -0.14 -2.99 7.68 37.16 0.29 -2.70 16 4 N -0.52 -11.10 4.06 -229.52 -0.93 -12.03 16 5 C 0.19 4.64 4.48 -4.98 -0.02 4.61 16 6 C -0.50 -13.63 6.67 -34.44 -0.23 -13.86 16 7 H 0.08 2.05 5.35 -52.49 -0.28 1.77 16 8 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 9 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 10 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.00 0.02 5.32 -4.98 -0.03 0.00 16 15 C 0.35 5.51 6.86 -29.04 -0.20 5.31 16 16 O -0.42 -8.25 14.84 6.00 0.09 -8.16 16 17 C -0.14 -1.54 5.77 -29.03 -0.17 -1.71 16 18 C -0.07 -0.83 4.37 -104.62 -0.46 -1.28 16 19 C -0.11 -1.32 9.70 -39.58 -0.38 -1.71 16 20 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 21 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 22 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 23 C -0.11 -1.32 9.70 -39.58 -0.38 -1.70 16 24 H 0.07 1.54 6.49 -51.93 -0.34 1.20 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.71 6.25 -51.93 -0.32 0.38 16 27 H 0.06 1.16 6.69 -51.93 -0.35 0.82 16 28 H 0.05 1.23 7.46 -51.93 -0.39 0.84 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 2.21 5.46 -51.93 -0.28 1.93 16 31 H 0.01 0.17 5.69 -51.92 -0.30 -0.13 16 32 H 0.02 0.62 7.66 -51.93 -0.40 0.22 16 33 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 34 H 0.06 0.91 6.10 -51.93 -0.32 0.60 16 35 H 0.10 1.57 7.63 -51.93 -0.40 1.18 16 36 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 37 H 0.10 0.98 8.09 -51.93 -0.42 0.56 16 38 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 335.96 15.07 5.06 5.06 Total: -1.00 -31.48 335.96 -9.11 -40.59 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.30 Total: 1.70 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -2.74 Total: -18.21 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.20 Total: -37.51 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.16 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.48 -9.11 -40.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050153557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.813 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds