Wall clock time and date at job start Mon Mar 30 2020 07:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47136 * 2 1 4 4 N 1.46906 * 109.46936 * 119.99680 * 2 1 3 5 5 C 1.46900 * 110.99946 * 306.40872 * 4 2 1 6 6 C 1.50691 * 109.47290 * 287.25793 * 5 4 2 7 7 H 1.07999 * 120.00307 * 357.82630 * 6 5 4 8 8 C 1.37881 * 120.00073 * 177.82103 * 6 5 4 9 9 N 1.31514 * 120.00004 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 120.00058 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47113 * 59.99962 * 10 8 6 12 12 H 1.48492 * 109.47069 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46748 * 300.00213 * 10 8 6 14 14 C 1.46897 * 110.99807 * 70.36227 * 4 2 1 15 15 C 1.50702 * 109.47305 * 76.30861 * 14 4 2 16 16 O 1.20761 * 119.99536 * 357.45221 * 15 14 4 17 17 C 1.50696 * 120.00162 * 177.45437 * 15 14 4 18 18 C 1.50706 * 109.46965 * 179.97438 * 17 15 14 19 19 C 1.38236 * 119.99817 * 89.99850 * 18 17 15 20 20 C 1.38234 * 119.99720 * 179.97438 * 19 18 17 21 21 C 1.38244 * 120.00012 * 359.97438 * 20 19 18 22 22 C 1.38230 * 119.99875 * 0.27660 * 21 20 19 23 23 C 1.38235 * 119.99607 * 269.97463 * 18 17 15 24 24 H 1.09004 * 109.47488 * 308.12443 * 1 2 3 25 25 H 1.08999 * 109.47122 * 68.12327 * 1 2 3 26 26 H 1.09006 * 109.47362 * 188.11974 * 1 2 3 27 27 H 1.08996 * 109.47211 * 239.99210 * 2 1 3 28 28 H 1.09005 * 109.46993 * 171.58838 * 3 2 1 29 29 H 1.09000 * 109.46871 * 291.58511 * 3 2 1 30 30 H 1.08993 * 109.47223 * 51.58623 * 3 2 1 31 31 H 1.09009 * 109.47034 * 47.25954 * 5 4 2 32 32 H 1.08998 * 109.47138 * 167.25565 * 5 4 2 33 33 H 0.96998 * 119.99546 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.47364 * 316.30171 * 14 4 2 35 35 H 1.09005 * 109.46865 * 196.30388 * 14 4 2 36 36 H 1.08998 * 109.46976 * 59.99953 * 17 15 14 37 37 H 1.09002 * 109.47401 * 299.99643 * 17 15 14 38 38 H 1.07994 * 120.00332 * 359.97438 * 19 18 17 39 39 H 1.08000 * 120.00010 * 180.02562 * 20 19 18 40 40 H 1.07997 * 119.99915 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.00046 * 179.72330 * 22 21 20 42 42 H 1.07995 * 120.00193 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.4276 -0.1204 2.4162 6 6 2.0390 1.2305 2.6850 7 1 2.8169 1.6094 2.0388 8 6 1.6051 1.9828 3.7559 9 7 0.6580 1.5213 4.5430 10 14 2.3625 3.6577 4.0887 11 1 2.1425 4.5422 2.9163 12 1 1.7271 4.2586 5.2888 13 1 3.8203 3.5034 4.3258 14 6 1.7605 -2.1360 1.1166 15 6 2.7549 -2.7719 0.1796 16 8 3.5635 -2.0862 -0.3986 17 6 2.7401 -4.2633 -0.0359 18 6 3.8254 -4.6407 -1.0110 19 6 5.0908 -4.9526 -0.5501 20 6 6.0861 -5.2993 -1.4445 21 6 5.8159 -5.3346 -2.7998 22 6 4.5519 -5.0177 -3.2610 23 6 3.5553 -4.6755 -2.3663 24 1 -0.3634 0.6345 0.8084 25 1 -0.3633 0.3829 -0.9536 26 1 -0.3634 -1.0174 0.1452 27 1 1.8933 -0.5139 -0.8899 28 1 3.1196 1.4461 0.1503 29 1 1.8046 1.9110 -0.9556 30 1 1.5591 1.9978 0.8052 31 1 0.3515 -0.0116 2.2801 32 1 1.6221 -0.7817 3.2605 33 1 0.3525 2.0508 5.2961 34 1 0.7504 -2.3030 0.7425 35 1 1.8592 -2.5803 2.1071 36 1 1.7718 -4.5629 -0.4367 37 1 2.9125 -4.7694 0.9140 38 1 5.3018 -4.9254 0.5087 39 1 7.0746 -5.5434 -1.0844 40 1 6.5934 -5.6059 -3.4986 41 1 4.3420 -5.0410 -4.3202 42 1 2.5667 -4.4318 -2.7263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050153557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:31 Heat of formation + Delta-G solvation = -18.562256 kcal Electronic energy + Delta-G solvation = -21243.112033 eV Core-core repulsion = 18187.833344 eV Total energy + Delta-G solvation = -3055.278688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.01024 -39.76289 -38.54953 -34.65904 -33.83468 -32.70480 -31.73453 -30.35366 -28.91912 -27.84755 -26.36170 -24.07081 -23.44091 -22.55322 -20.83749 -19.98604 -18.47812 -17.70644 -17.08469 -16.79312 -16.57498 -16.38239 -16.11010 -15.75767 -15.28939 -14.93227 -14.56362 -14.27531 -14.22699 -13.98360 -13.68509 -13.35423 -13.16692 -13.07443 -12.92600 -12.76216 -12.63270 -12.54455 -12.30936 -12.03051 -11.94363 -11.83952 -11.82402 -11.41738 -10.90826 -10.49717 -10.44282 -9.77336 -9.55462 -8.82866 -8.12204 -6.14309 0.46836 0.54814 1.20338 1.42156 1.43603 1.51148 2.43616 2.78066 3.17957 3.19815 3.57110 3.78689 3.99156 4.14956 4.19194 4.29684 4.30714 4.39679 4.45305 4.52837 4.57085 4.64242 4.69706 4.73301 4.82385 4.86063 4.98520 5.02761 5.13295 5.19669 5.20231 5.26668 5.34038 5.58985 5.59448 5.65064 5.71746 5.73661 5.78447 6.16560 6.18014 6.46508 6.65304 6.87480 6.97362 7.49434 8.97836 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028206 B = 0.003843 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.472028 B = 7285.099749 C = 7444.494193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.093 3.907 3 C -0.137 4.137 4 N -0.537 5.537 5 C 0.202 3.798 6 C -0.508 4.508 7 H 0.070 0.930 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.951 3.049 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.275 1.275 14 C -0.007 4.007 15 C 0.362 3.638 16 O -0.467 6.467 17 C -0.125 4.125 18 C -0.085 4.085 19 C -0.129 4.129 20 C -0.131 4.131 21 C -0.133 4.133 22 C -0.129 4.129 23 C -0.125 4.125 24 H 0.042 0.958 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.036 0.964 29 H 0.053 0.947 30 H 0.067 0.933 31 H -0.008 1.008 32 H 0.000 1.000 33 H 0.261 0.739 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.415 -15.049 -13.162 20.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.015 4.015 3 C -0.194 4.194 4 N -0.261 5.261 5 C 0.076 3.924 6 C -0.546 4.546 7 H 0.088 0.912 8 C -0.194 4.194 9 N -0.576 5.576 10 Si 0.777 3.223 11 H -0.194 1.194 12 H -0.211 1.211 13 H -0.200 1.200 14 C -0.135 4.135 15 C 0.237 3.763 16 O -0.340 6.340 17 C -0.162 4.162 18 C -0.085 4.085 19 C -0.147 4.147 20 C -0.149 4.149 21 C -0.150 4.150 22 C -0.147 4.147 23 C -0.143 4.143 24 H 0.061 0.939 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.010 0.990 32 H 0.018 0.982 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.155 0.845 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.265 -14.555 -13.286 20.163 hybrid contribution -0.636 0.879 0.736 1.311 sum 3.629 -13.677 -12.550 18.913 Atomic orbital electron populations 1.22354 0.97466 1.01498 1.01929 1.21448 0.92491 0.95420 0.92138 1.22079 1.00287 0.96175 1.00886 1.62056 1.59683 1.01113 1.03213 1.19543 0.92742 0.94011 0.86114 1.21710 1.19742 1.02306 1.10861 0.91228 1.25707 0.95876 1.01739 0.96032 1.70053 1.30477 1.39449 1.17614 0.85703 0.78623 0.80314 0.77633 1.19373 1.21077 1.20028 1.22695 0.98782 0.90660 1.01375 1.24933 0.81693 0.91191 0.78453 1.90378 1.34962 1.66614 1.42077 1.21201 1.00343 0.93278 1.01403 1.19706 0.95049 0.99158 0.94562 1.21275 0.93178 0.99783 1.00434 1.21419 0.99677 0.99955 0.93836 1.21463 0.97490 1.00137 0.95944 1.21434 0.93432 0.99352 1.00514 1.21275 1.00402 0.99887 0.92756 0.93913 0.91093 0.92279 0.91390 0.94477 0.92848 0.91446 0.99017 0.98172 0.93047 0.89945 0.87680 0.85013 0.85577 0.85799 0.84516 0.84075 0.84188 0.85180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.11 8.32 71.98 0.60 -5.51 16 2 C 0.09 3.67 2.62 44.91 0.12 3.79 16 3 C -0.14 -5.72 7.68 71.98 0.55 -5.17 16 4 N -0.54 -22.96 4.06 -880.08 -3.58 -26.53 16 5 C 0.20 10.27 4.48 85.55 0.38 10.66 16 6 C -0.51 -28.18 6.67 25.60 0.17 -28.01 16 7 H 0.07 3.88 5.35 -2.91 -0.02 3.86 16 8 C 0.00 0.21 5.46 84.66 0.46 0.67 16 9 N -0.93 -55.26 13.29 21.45 0.28 -54.98 16 10 Si 0.95 44.67 29.54 68.60 2.03 46.70 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 12 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 13 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 14 C -0.01 -0.21 5.32 85.56 0.46 0.24 16 15 C 0.36 10.80 6.86 29.10 0.20 11.00 16 16 O -0.47 -17.92 14.84 -1.45 -0.02 -17.95 16 17 C -0.12 -2.53 5.77 29.10 0.17 -2.36 16 18 C -0.08 -1.98 4.37 -19.86 -0.09 -2.07 16 19 C -0.13 -3.02 9.70 22.27 0.22 -2.80 16 20 C -0.13 -2.75 10.05 22.27 0.22 -2.52 16 21 C -0.13 -2.57 10.05 22.27 0.22 -2.34 16 22 C -0.13 -2.58 10.05 22.27 0.22 -2.35 16 23 C -0.13 -2.75 9.70 22.27 0.22 -2.53 16 24 H 0.04 1.77 6.49 -2.38 -0.02 1.75 16 25 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.06 1.85 6.25 -2.38 -0.01 1.83 16 27 H 0.07 2.58 6.69 -2.39 -0.02 2.57 16 28 H 0.04 1.64 7.46 -2.38 -0.02 1.62 16 29 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.07 3.18 5.46 -2.39 -0.01 3.17 16 31 H -0.01 -0.42 5.69 -2.38 -0.01 -0.43 16 32 H 0.00 0.01 7.66 -2.39 -0.02 -0.01 16 33 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 34 H 0.08 2.32 6.10 -2.39 -0.01 2.31 16 35 H 0.11 3.27 7.63 -2.38 -0.02 3.25 16 36 H 0.13 1.89 8.08 -2.39 -0.02 1.88 16 37 H 0.13 2.02 8.09 -2.39 -0.02 2.01 16 38 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 39 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 41 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 42 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -68.87 335.96 3.84 -65.03 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 1.00 Total: 17.04 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 4.12 Total: -29.31 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -3.29 Total: -81.51 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.02 Total: -17.95 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -68.87 3.84 -65.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050153557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.468 kcal (2) G-P(sol) polarization free energy of solvation -68.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds