Wall clock time and date at job start Mon Mar 30 2020 07:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47286 * 2 1 4 4 H 1.09002 * 110.81831 * 303.12237 * 3 2 1 5 5 C 1.54888 * 110.75496 * 66.45234 * 3 2 1 6 6 C 1.54269 * 104.31038 * 156.32209 * 5 3 2 7 7 C 1.53866 * 106.60362 * 336.32904 * 6 5 3 8 8 H 1.09003 * 110.03340 * 240.66949 * 7 6 5 9 9 N 1.46499 * 110.03692 * 119.28116 * 7 6 5 10 10 C 1.39782 * 119.99753 * 86.45265 * 9 7 6 11 11 C 1.38951 * 120.00867 * 359.73403 * 10 9 7 12 12 C 1.38010 * 119.99500 * 179.71877 * 11 10 9 13 13 C 1.38905 * 120.00321 * 0.54974 * 12 11 10 14 14 O 1.35788 * 119.98998 * 179.70166 * 13 12 11 15 15 C 1.34812 * 116.99785 * 174.48233 * 14 13 12 16 16 H 1.08004 * 120.00164 * 5.05695 * 15 14 13 17 17 C 1.38621 * 120.00223 * 185.05495 * 15 14 13 18 18 N 1.31590 * 119.99836 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00163 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46856 * 90.00520 * 19 17 15 21 21 H 1.48505 * 109.46870 * 210.00215 * 19 17 15 22 22 H 1.48496 * 109.46908 * 330.00251 * 19 17 15 23 23 C 1.38900 * 120.00970 * 359.72501 * 13 12 11 24 24 C 1.38008 * 120.01081 * 359.97438 * 23 13 12 25 25 C 1.54275 * 106.59574 * 359.97438 * 7 6 5 26 26 H 1.08998 * 109.46701 * 300.00060 * 1 2 3 27 27 H 1.08999 * 109.47143 * 59.99829 * 1 2 3 28 28 H 1.08995 * 109.47162 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47024 * 240.00453 * 2 1 3 30 30 H 1.08999 * 109.47143 * 120.00171 * 2 1 3 31 31 H 1.09002 * 110.48689 * 37.58375 * 5 3 2 32 32 H 1.08994 * 110.49208 * 275.06780 * 5 3 2 33 33 H 1.09001 * 110.03095 * 95.61717 * 6 5 3 34 34 H 1.09004 * 110.03534 * 217.03758 * 6 5 3 35 35 H 0.96998 * 120.00106 * 266.45793 * 9 7 6 36 36 H 1.07999 * 119.99932 * 359.97438 * 11 10 9 37 37 H 1.07996 * 119.99875 * 180.29215 * 12 11 10 38 38 H 0.97001 * 119.99636 * 180.02562 * 18 17 15 39 39 H 1.08001 * 119.98875 * 180.02562 * 23 13 12 40 40 H 1.07999 * 120.00320 * 179.97438 * 24 23 13 41 41 H 1.08999 * 110.48463 * 142.29031 * 25 7 6 42 42 H 1.09003 * 110.48177 * 264.93118 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6443 1.9933 -0.8533 5 6 1.6775 2.1529 1.3278 6 6 2.7166 3.2866 1.4497 7 6 3.9337 2.8596 0.6108 8 1 4.8162 2.7818 1.2459 9 7 4.1706 3.8306 -0.4602 10 6 4.9507 4.9644 -0.2156 11 6 5.4969 5.1735 1.0448 12 6 6.2718 6.2901 1.2844 13 6 6.4964 7.2107 0.2688 14 8 7.2539 8.3123 0.5065 15 6 7.5281 9.1058 -0.5484 16 1 7.0829 8.8984 -1.5103 17 6 8.3814 10.1879 -0.3984 18 7 8.9242 10.4403 0.7734 19 14 8.7619 11.2869 -1.8603 20 1 7.7723 12.3926 -1.9190 21 1 10.1273 11.8519 -1.7126 22 1 8.6886 10.4898 -3.1111 23 6 5.9458 7.0048 -0.9897 24 6 5.1759 5.8853 -1.2316 25 6 3.5921 1.4809 0.0088 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 1.7662 1.4623 2.1665 32 1 0.6691 2.5634 1.2778 33 1 2.3021 4.2164 1.0601 34 1 3.0081 3.4154 2.4921 35 1 3.7862 3.6868 -1.3391 36 1 5.3184 4.4601 1.8358 37 1 6.7003 6.4502 2.2627 38 1 9.5210 11.1977 0.8784 39 1 6.1209 7.7206 -1.7793 40 1 4.7475 5.7255 -2.2100 41 1 3.9807 1.4011 -1.0064 42 1 3.9903 0.6822 0.6346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078005303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:18 Heat of formation + Delta-G solvation = -19.651697 kcal Electronic energy + Delta-G solvation = -20548.298330 eV Core-core repulsion = 17492.972400 eV Total energy + Delta-G solvation = -3055.325930 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.45988 -38.54310 -36.65400 -34.31081 -32.32977 -31.71454 -30.14366 -28.92218 -27.68085 -26.23135 -24.87142 -23.07601 -22.03277 -20.96552 -20.05239 -19.79415 -17.74551 -17.17734 -16.30045 -15.91445 -15.23345 -14.87667 -14.41640 -14.21884 -13.86335 -13.59881 -13.45385 -13.35603 -12.94071 -12.58213 -12.47743 -12.36721 -12.31957 -11.72098 -11.49832 -11.36935 -11.28355 -11.05530 -10.97574 -10.85589 -10.69302 -10.65123 -10.61492 -10.45202 -10.28595 -9.19617 -9.12814 -8.40474 -8.12810 -6.34699 -6.29255 -3.86627 2.24536 2.61947 3.20148 3.20933 3.25498 3.89222 4.08495 4.36478 4.45752 4.57257 4.73096 4.94883 5.09484 5.14000 5.23114 5.32212 5.35218 5.41637 5.48689 5.50499 5.60685 5.65730 5.69675 5.70936 5.74293 5.85202 5.88489 5.94139 5.96892 6.11295 6.16995 6.26887 6.29063 6.37499 6.61025 6.90906 6.96972 7.18734 7.35926 7.49873 7.69533 8.05522 8.15118 8.31623 9.16464 9.91685 10.89287 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.051747 B = 0.002913 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.963648 B = 9610.283862 C = 9885.735311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.093 4.093 4 H 0.074 0.926 5 C -0.117 4.117 6 C -0.143 4.143 7 C 0.156 3.844 8 H 0.075 0.925 9 N -0.752 5.752 10 C 0.126 3.874 11 C -0.146 4.146 12 C -0.150 4.150 13 C 0.112 3.888 14 O -0.189 6.189 15 C -0.386 4.386 16 H 0.088 0.912 17 C 0.035 3.965 18 N -0.870 5.870 19 Si 0.937 3.063 20 H -0.275 1.275 21 H -0.279 1.279 22 H -0.269 1.269 23 C -0.190 4.190 24 C -0.144 4.144 25 C -0.126 4.126 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.389 0.611 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.267 0.733 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.613 -18.305 -1.713 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.111 4.111 4 H 0.093 0.907 5 C -0.154 4.154 6 C -0.182 4.182 7 C 0.049 3.951 8 H 0.093 0.907 9 N -0.387 5.387 10 C 0.028 3.972 11 C -0.168 4.168 12 C -0.170 4.170 13 C 0.060 3.940 14 O -0.094 6.094 15 C -0.463 4.463 16 H 0.105 0.895 17 C -0.168 4.168 18 N -0.507 5.507 19 Si 0.763 3.237 20 H -0.201 1.201 21 H -0.204 1.204 22 H -0.194 1.194 23 C -0.210 4.210 24 C -0.166 4.166 25 C -0.165 4.165 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.222 0.778 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.077 0.923 39 H 0.144 0.856 40 H 0.123 0.877 41 H 0.088 0.912 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.318 -18.111 -1.233 22.515 hybrid contribution 0.000 0.558 -1.125 1.256 sum -13.318 -17.552 -2.358 22.159 Atomic orbital electron populations 1.21780 0.95988 1.01313 1.01919 1.21514 0.95797 0.96204 1.01817 1.22234 0.95101 0.95560 0.98248 0.90744 1.22398 0.98737 0.97267 0.97026 1.22775 0.96160 0.98978 1.00301 1.21284 0.96895 0.87577 0.89298 0.90727 1.44377 1.58597 1.23127 1.12603 1.17411 0.96739 0.88955 0.94093 1.20193 1.02509 0.98781 0.95310 1.20032 1.03753 0.94573 0.98676 1.19235 0.93264 0.88632 0.92881 1.83984 1.60697 1.29461 1.35306 1.21228 1.28173 1.07441 0.89418 0.89497 1.25214 0.95957 0.97479 0.98101 1.70055 1.29715 1.28353 1.22530 0.85769 0.78078 0.79779 0.80099 1.20085 1.20425 1.19391 1.20984 1.02682 0.99363 0.97945 1.20229 1.03448 0.95567 0.97363 1.22767 0.95533 0.96703 1.01453 0.92586 0.92861 0.93049 0.92172 0.91990 0.91816 0.92028 0.90929 0.91808 0.77786 0.87143 0.86610 0.92346 0.85588 0.87740 0.91154 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.76 37.16 0.36 -0.64 16 2 C -0.12 -0.81 5.45 -26.73 -0.15 -0.95 16 3 C -0.09 -0.75 2.95 -88.43 -0.26 -1.01 16 4 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 5 C -0.12 -1.01 5.46 -25.07 -0.14 -1.15 16 6 C -0.14 -1.54 6.59 -25.62 -0.17 -1.71 16 7 C 0.16 1.76 2.89 -66.81 -0.19 1.57 16 8 H 0.07 0.91 6.52 -51.93 -0.34 0.57 16 9 N -0.75 -10.09 5.12 -51.03 -0.26 -10.35 16 10 C 0.13 2.19 6.66 -83.70 -0.56 1.64 16 11 C -0.15 -2.68 9.20 -39.40 -0.36 -3.05 16 12 C -0.15 -3.27 9.98 -39.42 -0.39 -3.67 16 13 C 0.11 2.79 6.65 -39.09 -0.26 2.53 16 14 O -0.19 -5.58 9.76 -0.02 0.00 -5.58 16 15 C -0.39 -11.11 9.48 30.87 0.29 -10.82 16 16 H 0.09 2.32 5.20 -52.48 -0.27 2.05 16 17 C 0.04 1.00 5.49 -17.51 -0.10 0.90 16 18 N -0.87 -26.30 13.67 55.48 0.76 -25.54 16 19 Si 0.94 21.16 29.55 -169.99 -5.02 16.14 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 C -0.19 -4.24 9.16 -39.42 -0.36 -4.60 16 24 C -0.14 -2.70 9.89 -39.40 -0.39 -3.09 16 25 C -0.13 -1.13 5.90 -24.87 -0.15 -1.28 16 26 H 0.06 0.37 7.40 -51.93 -0.38 -0.01 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 31 H 0.06 0.51 8.01 -51.93 -0.42 0.10 16 32 H 0.06 0.52 8.02 -51.93 -0.42 0.11 16 33 H 0.07 0.91 7.92 -51.93 -0.41 0.50 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.39 4.65 8.57 -40.82 -0.35 4.30 16 36 H 0.11 1.75 6.25 -52.49 -0.33 1.42 16 37 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.13 2.82 5.63 -52.49 -0.30 2.53 16 40 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 41 H 0.07 0.64 7.98 -51.93 -0.41 0.22 16 42 H 0.07 0.61 8.06 -51.93 -0.42 0.19 16 LS Contribution 337.72 15.07 5.09 5.09 Total: -1.00 -31.01 337.72 -8.81 -39.82 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.56 Total: 5.74 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -2.82 Total: -25.32 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.50 Total: -35.89 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: 0.00 Total: -5.58 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.01 -8.81 -39.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078005303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.166 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds