Wall clock time and date at job start Mon Mar 30 2020 07:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47286 * 2 1 4 4 H 1.09002 * 110.81831 * 303.12237 * 3 2 1 5 5 C 1.54888 * 110.75496 * 66.45234 * 3 2 1 6 6 C 1.54269 * 104.31038 * 156.32209 * 5 3 2 7 7 C 1.53866 * 106.60362 * 336.32904 * 6 5 3 8 8 H 1.09003 * 110.03340 * 240.66949 * 7 6 5 9 9 N 1.46499 * 110.03692 * 119.28116 * 7 6 5 10 10 C 1.39782 * 119.99753 * 86.45265 * 9 7 6 11 11 C 1.38951 * 120.00867 * 359.73403 * 10 9 7 12 12 C 1.38010 * 119.99500 * 179.71877 * 11 10 9 13 13 C 1.38905 * 120.00321 * 0.54974 * 12 11 10 14 14 O 1.35788 * 119.98998 * 179.70166 * 13 12 11 15 15 C 1.34812 * 116.99785 * 174.48233 * 14 13 12 16 16 H 1.08004 * 120.00164 * 5.05695 * 15 14 13 17 17 C 1.38621 * 120.00223 * 185.05495 * 15 14 13 18 18 N 1.31590 * 119.99836 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00163 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46856 * 90.00520 * 19 17 15 21 21 H 1.48505 * 109.46870 * 210.00215 * 19 17 15 22 22 H 1.48496 * 109.46908 * 330.00251 * 19 17 15 23 23 C 1.38900 * 120.00970 * 359.72501 * 13 12 11 24 24 C 1.38008 * 120.01081 * 359.97438 * 23 13 12 25 25 C 1.54275 * 106.59574 * 359.97438 * 7 6 5 26 26 H 1.08998 * 109.46701 * 300.00060 * 1 2 3 27 27 H 1.08999 * 109.47143 * 59.99829 * 1 2 3 28 28 H 1.08995 * 109.47162 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47024 * 240.00453 * 2 1 3 30 30 H 1.08999 * 109.47143 * 120.00171 * 2 1 3 31 31 H 1.09002 * 110.48689 * 37.58375 * 5 3 2 32 32 H 1.08994 * 110.49208 * 275.06780 * 5 3 2 33 33 H 1.09001 * 110.03095 * 95.61717 * 6 5 3 34 34 H 1.09004 * 110.03534 * 217.03758 * 6 5 3 35 35 H 0.96998 * 120.00106 * 266.45793 * 9 7 6 36 36 H 1.07999 * 119.99932 * 359.97438 * 11 10 9 37 37 H 1.07996 * 119.99875 * 180.29215 * 12 11 10 38 38 H 0.97001 * 119.99636 * 180.02562 * 18 17 15 39 39 H 1.08001 * 119.98875 * 180.02562 * 23 13 12 40 40 H 1.07999 * 120.00320 * 179.97438 * 24 23 13 41 41 H 1.08999 * 110.48463 * 142.29031 * 25 7 6 42 42 H 1.09003 * 110.48177 * 264.93118 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6443 1.9933 -0.8533 5 6 1.6775 2.1529 1.3278 6 6 2.7166 3.2866 1.4497 7 6 3.9337 2.8596 0.6108 8 1 4.8162 2.7818 1.2459 9 7 4.1706 3.8306 -0.4602 10 6 4.9507 4.9644 -0.2156 11 6 5.4969 5.1735 1.0448 12 6 6.2718 6.2901 1.2844 13 6 6.4964 7.2107 0.2688 14 8 7.2539 8.3123 0.5065 15 6 7.5281 9.1058 -0.5484 16 1 7.0829 8.8984 -1.5103 17 6 8.3814 10.1879 -0.3984 18 7 8.9242 10.4403 0.7734 19 14 8.7619 11.2869 -1.8603 20 1 7.7723 12.3926 -1.9190 21 1 10.1273 11.8519 -1.7126 22 1 8.6886 10.4898 -3.1111 23 6 5.9458 7.0048 -0.9897 24 6 5.1759 5.8853 -1.2316 25 6 3.5921 1.4809 0.0088 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8900 31 1 1.7662 1.4623 2.1665 32 1 0.6691 2.5634 1.2778 33 1 2.3021 4.2164 1.0601 34 1 3.0081 3.4154 2.4921 35 1 3.7862 3.6868 -1.3391 36 1 5.3184 4.4601 1.8358 37 1 6.7003 6.4502 2.2627 38 1 9.5210 11.1977 0.8784 39 1 6.1209 7.7206 -1.7793 40 1 4.7475 5.7255 -2.2100 41 1 3.9807 1.4011 -1.0064 42 1 3.9903 0.6822 0.6346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078005303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:18 Heat of formation + Delta-G solvation = -37.243465 kcal Electronic energy + Delta-G solvation = -20549.061166 eV Core-core repulsion = 17492.972400 eV Total energy + Delta-G solvation = -3056.088766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.83544 -39.84905 -38.21349 -35.45100 -34.13355 -32.92801 -31.76034 -29.82432 -28.82608 -27.67432 -26.60778 -23.95417 -23.35781 -22.54458 -20.93777 -20.69559 -19.57520 -18.88079 -17.84243 -16.96033 -16.34368 -16.10570 -15.84384 -15.49562 -15.37366 -15.10685 -14.71520 -14.37071 -14.20380 -14.04080 -13.68554 -13.56613 -13.43155 -13.12802 -12.81584 -12.80693 -12.44757 -12.28605 -12.11991 -12.03090 -11.93433 -11.70688 -11.38413 -11.27988 -11.24666 -11.07043 -10.88364 -10.14963 -9.76604 -8.38873 -7.90298 -6.02382 0.59599 0.94878 1.36579 1.46601 1.54179 2.22992 2.70146 2.92018 3.26151 3.65963 3.68917 3.70116 3.91251 4.13511 4.18420 4.37066 4.39894 4.50173 4.56663 4.59195 4.65269 4.70104 4.72753 4.80576 4.89041 4.92881 5.02254 5.08755 5.14063 5.16908 5.22480 5.26729 5.30812 5.34189 5.38796 5.48912 5.54226 5.57497 5.63048 5.79776 6.02238 6.12163 6.67852 7.06087 7.09866 7.94316 8.85757 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.051747 B = 0.002913 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.963648 B = 9610.283862 C = 9885.735311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.088 4.088 4 H 0.070 0.930 5 C -0.111 4.111 6 C -0.142 4.142 7 C 0.148 3.852 8 H 0.070 0.930 9 N -0.738 5.738 10 C 0.155 3.845 11 C -0.145 4.145 12 C -0.156 4.156 13 C 0.061 3.939 14 O -0.243 6.243 15 C -0.405 4.405 16 H 0.098 0.902 17 C -0.030 4.030 18 N -0.927 5.927 19 Si 1.017 2.983 20 H -0.264 1.264 21 H -0.273 1.273 22 H -0.254 1.254 23 C -0.193 4.193 24 C -0.148 4.148 25 C -0.119 4.119 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.401 0.599 36 H 0.140 0.860 37 H 0.111 0.889 38 H 0.269 0.731 39 H 0.118 0.882 40 H 0.138 0.862 41 H 0.073 0.927 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.434 -20.862 -3.253 26.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.106 4.106 4 H 0.089 0.911 5 C -0.149 4.149 6 C -0.181 4.181 7 C 0.042 3.958 8 H 0.088 0.912 9 N -0.371 5.371 10 C 0.054 3.946 11 C -0.167 4.167 12 C -0.176 4.176 13 C 0.011 3.989 14 O -0.151 6.151 15 C -0.482 4.482 16 H 0.115 0.885 17 C -0.226 4.226 18 N -0.567 5.567 19 Si 0.837 3.163 20 H -0.189 1.189 21 H -0.197 1.197 22 H -0.178 1.178 23 C -0.213 4.213 24 C -0.170 4.170 25 C -0.157 4.157 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.236 0.764 36 H 0.158 0.842 37 H 0.130 0.870 38 H 0.078 0.922 39 H 0.136 0.864 40 H 0.156 0.844 41 H 0.092 0.908 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.208 -20.757 -2.788 25.882 hybrid contribution 0.338 1.008 -0.598 1.220 sum -14.869 -19.749 -3.385 24.951 Atomic orbital electron populations 1.21782 0.95763 1.01742 1.01769 1.21489 0.95963 0.95302 1.02285 1.22195 0.94454 0.96285 0.97690 0.91107 1.22370 0.98087 0.96646 0.97801 1.22722 0.96389 0.98969 1.00039 1.21526 0.97022 0.88340 0.88870 0.91161 1.44502 1.56844 1.21824 1.13957 1.17538 0.94726 0.89170 0.93131 1.20432 1.01553 0.98033 0.96722 1.20236 1.04163 0.95134 0.98033 1.19727 0.95045 0.89063 0.95065 1.83931 1.63313 1.31611 1.36278 1.21749 1.28535 1.07919 0.89994 0.88489 1.26543 0.95497 0.98960 1.01582 1.70213 1.31449 1.29708 1.25358 0.84606 0.78077 0.77479 0.76144 1.18929 1.19739 1.17755 1.21048 1.03033 1.00449 0.96742 1.20493 1.02757 0.94473 0.99267 1.22730 0.96120 0.95185 1.01675 0.92721 0.93051 0.92397 0.91738 0.91514 0.90822 0.91844 0.92792 0.91731 0.76376 0.84228 0.87039 0.92169 0.86410 0.84414 0.90810 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.76 71.98 0.70 -0.88 16 2 C -0.11 -1.19 5.45 30.59 0.17 -1.03 16 3 C -0.09 -1.12 2.95 -9.38 -0.03 -1.15 16 4 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 5 C -0.11 -1.59 5.46 31.67 0.17 -1.41 16 6 C -0.14 -2.67 6.59 31.32 0.21 -2.47 16 7 C 0.15 2.85 2.89 45.72 0.13 2.99 16 8 H 0.07 1.47 6.52 -2.39 -0.02 1.46 16 9 N -0.74 -17.26 5.12 -315.37 -1.62 -18.88 16 10 C 0.16 5.03 6.66 38.22 0.25 5.29 16 11 C -0.15 -5.14 9.20 22.39 0.21 -4.93 16 12 C -0.16 -6.95 9.98 22.38 0.22 -6.72 16 13 C 0.06 3.14 6.65 22.59 0.15 3.29 16 14 O -0.24 -15.24 9.76 -22.98 -0.22 -15.46 16 15 C -0.41 -24.48 9.48 67.91 0.64 -23.84 16 16 H 0.10 5.38 5.20 -2.91 -0.02 5.37 16 17 C -0.03 -1.76 5.49 84.82 0.47 -1.29 16 18 N -0.93 -58.91 13.67 21.61 0.30 -58.62 16 19 Si 1.02 44.41 29.55 68.60 2.03 46.44 16 20 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.25 -10.28 7.11 99.48 0.71 -9.57 16 23 C -0.19 -8.73 9.16 22.37 0.20 -8.52 16 24 C -0.15 -5.27 9.89 22.39 0.22 -5.05 16 25 C -0.12 -1.68 5.90 31.80 0.19 -1.49 16 26 H 0.05 0.58 7.40 -2.39 -0.02 0.56 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.07 0.66 8.10 -2.39 -0.02 0.65 16 31 H 0.07 0.93 8.01 -2.39 -0.02 0.91 16 32 H 0.06 0.91 8.02 -2.39 -0.02 0.89 16 33 H 0.05 1.23 7.92 -2.39 -0.02 1.21 16 34 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.40 7.96 8.57 -92.71 -0.79 7.17 16 36 H 0.14 4.09 6.25 -2.91 -0.02 4.07 16 37 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 38 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 39 H 0.12 5.41 5.63 -2.91 -0.02 5.39 16 40 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 41 H 0.07 1.03 7.98 -2.39 -0.02 1.01 16 42 H 0.09 1.07 8.06 -2.39 -0.02 1.05 16 Total: -1.00 -71.58 337.72 4.61 -66.97 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.21 Total: 26.77 kcal Atomic # 6 Polarization: -51.12 SS G_CDS: 3.91 Total: -47.21 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -1.32 Total: -77.50 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: -0.22 Total: -15.46 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -71.58 4.61 -66.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078005303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.724 kcal (2) G-P(sol) polarization free energy of solvation -71.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds