Wall clock time and date at job start Mon Mar 30 2020 07:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47197 * 2 1 4 4 N 1.46507 * 109.47142 * 119.99564 * 2 1 3 5 5 C 1.36932 * 119.99992 * 294.91679 * 4 2 1 6 6 H 1.08000 * 120.00230 * 37.24480 * 5 4 2 7 7 C 1.38816 * 120.00022 * 217.25116 * 5 4 2 8 8 N 1.31620 * 120.00025 * 21.14576 * 7 5 4 9 9 Si 1.86794 * 120.00117 * 201.14554 * 7 5 4 10 10 H 1.48502 * 109.47146 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47265 * 119.99639 * 9 7 5 12 12 H 1.48501 * 109.47473 * 239.99804 * 9 7 5 13 13 C 1.46499 * 119.99848 * 114.91620 * 4 2 1 14 14 C 1.52998 * 109.46913 * 270.00205 * 13 4 2 15 15 H 1.08999 * 109.34033 * 59.67125 * 14 13 4 16 16 O 1.42725 * 109.33923 * 299.99904 * 14 13 4 17 17 C 1.43208 * 113.14097 * 188.22319 * 16 14 13 18 18 C 1.52976 * 108.46879 * 70.70574 * 17 16 14 19 19 C 1.50742 * 109.70684 * 310.80956 * 18 17 16 20 20 C 1.38596 * 118.76014 * 196.86109 * 19 18 17 21 21 C 1.38066 * 120.27557 * 180.17787 * 20 19 18 22 22 C 1.38261 * 119.86561 * 0.02562 * 21 20 19 23 23 C 1.37718 * 119.86443 * 359.87715 * 22 21 20 24 24 C 1.37782 * 121.43562 * 16.88852 * 19 18 17 25 25 H 1.09006 * 109.46844 * 303.31013 * 1 2 3 26 26 H 1.08999 * 109.46710 * 63.31170 * 1 2 3 27 27 H 1.08996 * 109.47027 * 183.31110 * 1 2 3 28 28 H 1.08996 * 109.47430 * 239.99792 * 2 1 3 29 29 H 1.08997 * 109.47162 * 181.61316 * 3 2 1 30 30 H 1.08998 * 109.46531 * 301.60638 * 3 2 1 31 31 H 1.08993 * 109.47320 * 61.60288 * 3 2 1 32 32 H 0.96996 * 120.00502 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47171 * 150.00125 * 13 4 2 34 34 H 1.09004 * 109.47120 * 29.99804 * 13 4 2 35 35 H 1.09006 * 109.63593 * 311.01604 * 17 16 14 36 36 H 1.08998 * 109.63959 * 190.40502 * 17 16 14 37 37 H 1.09007 * 109.41705 * 70.86470 * 18 17 16 38 38 H 1.08995 * 109.42764 * 190.74232 * 18 17 16 39 39 H 1.08000 * 119.85768 * 0.15745 * 20 19 18 40 40 H 1.08000 * 120.06945 * 179.97438 * 21 20 19 41 41 H 1.07989 * 120.05387 * 179.90418 * 22 21 20 42 42 H 1.08001 * 119.76193 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.7756 -0.1651 2.4372 6 1 0.8330 0.3203 2.6432 7 6 2.7410 -0.2560 3.4305 8 7 4.0018 -0.4510 3.1069 9 14 2.2508 -0.1018 5.2264 10 1 0.7843 0.1111 5.3227 11 1 2.6181 -1.3464 5.9485 12 1 2.9601 1.0517 5.8359 13 6 2.7665 -1.9433 1.0648 14 6 1.7935 -3.1236 1.0928 15 1 1.0859 -3.0278 0.2693 16 8 1.0818 -3.1203 2.3300 17 6 0.2844 -4.2939 2.5238 18 6 1.2188 -5.4786 2.7756 19 6 2.2971 -5.5082 1.7227 20 6 3.0270 -6.6735 1.5483 21 6 4.0244 -6.7340 0.5955 22 6 4.2967 -5.6275 -0.1875 23 6 3.5702 -4.4703 -0.0157 24 6 2.5670 -4.4074 0.9393 25 1 -0.3633 0.5644 0.8589 26 1 -0.3633 0.4616 -0.9182 27 1 -0.3633 -1.0259 0.0594 28 1 1.8934 -0.5138 -0.8899 29 1 3.1296 1.4427 -0.0289 30 1 1.6533 1.9645 -0.8752 31 1 1.7004 1.9480 0.9039 32 1 4.6764 -0.5149 3.8010 33 1 3.4715 -2.0338 1.8911 34 1 3.3112 -1.9438 0.1206 35 1 -0.3134 -4.4819 1.6318 36 1 -0.3701 -4.1541 3.3841 37 1 1.6759 -5.3767 3.7599 38 1 0.6474 -6.4059 2.7356 39 1 2.8148 -7.5375 2.1604 40 1 4.5913 -7.6436 0.4627 41 1 5.0771 -5.6710 -0.9326 42 1 3.7840 -3.6070 -0.6285 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080216238.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:19 Heat of formation + Delta-G solvation = -3.066427 kcal Electronic energy + Delta-G solvation = -22511.136023 eV Core-core repulsion = 19456.529285 eV Total energy + Delta-G solvation = -3054.606739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.89163 -37.11024 -36.17408 -33.01898 -32.14244 -31.55680 -29.76480 -28.73889 -26.45326 -26.09984 -24.04381 -23.39387 -22.54794 -20.78582 -19.59037 -19.40640 -16.74749 -16.21447 -15.76670 -15.28573 -14.83614 -14.71351 -14.12165 -13.95198 -13.64602 -13.31690 -13.12891 -12.91174 -12.56394 -12.31246 -12.13083 -11.75361 -11.54825 -11.40839 -11.24430 -11.19473 -10.96579 -10.66141 -10.63202 -10.29214 -10.22473 -10.08333 -9.81886 -9.72534 -9.46531 -8.86345 -8.44743 -8.29878 -8.22358 -6.42120 -5.61988 -3.16793 1.65911 1.67922 3.48008 3.56061 3.59242 4.04251 4.53481 4.65312 4.97107 5.09500 5.16770 5.28665 5.37165 5.49662 5.54148 5.61479 5.72392 5.74685 5.88884 5.99732 6.05339 6.12702 6.20806 6.24662 6.32787 6.36130 6.39374 6.48631 6.51615 6.68167 6.73237 6.79085 6.81888 6.86186 6.87314 7.03093 7.26800 7.30912 7.39621 7.73833 7.99707 8.05335 8.69198 9.33719 9.98450 10.53949 11.39544 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015961 B = 0.007351 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.839091 B = 3807.982371 C = 4384.916206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 C -0.144 4.144 4 N -0.571 5.571 5 C -0.228 4.228 6 H 0.057 0.943 7 C 0.016 3.984 8 N -0.893 5.893 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.295 1.295 13 C 0.156 3.844 14 C 0.108 3.892 15 H 0.050 0.950 16 O -0.328 6.328 17 C 0.051 3.949 18 C -0.113 4.113 19 C -0.078 4.078 20 C -0.123 4.123 21 C -0.130 4.130 22 C -0.125 4.125 23 C -0.108 4.108 24 C -0.093 4.093 25 H 0.052 0.948 26 H 0.033 0.967 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.029 0.971 31 H 0.058 0.942 32 H 0.250 0.750 33 H 0.106 0.894 34 H 0.040 0.960 35 H 0.043 0.957 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.216 -9.910 -5.896 11.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 C -0.203 4.203 4 N -0.290 5.290 5 C -0.358 4.358 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.537 5.537 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.217 1.217 12 H -0.223 1.223 13 C 0.029 3.971 14 C 0.048 3.952 15 H 0.068 0.932 16 O -0.245 6.245 17 C -0.026 4.026 18 C -0.150 4.150 19 C -0.078 4.078 20 C -0.142 4.142 21 C -0.149 4.149 22 C -0.144 4.144 23 C -0.127 4.127 24 C -0.094 4.094 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.124 0.876 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.060 -9.714 -5.656 11.650 hybrid contribution -0.140 -0.465 0.869 0.996 sum -3.200 -10.180 -4.787 11.696 Atomic orbital electron populations 1.22197 0.98876 1.00543 0.99649 1.20435 0.92065 0.92391 0.89697 1.22026 1.00777 0.97761 0.99754 1.43771 1.63828 1.20004 1.01401 1.18764 0.96934 1.33080 0.86981 0.92581 1.25006 0.94468 1.00476 0.98359 1.69957 0.99408 1.52743 1.31544 0.86382 0.78078 0.76864 0.86299 1.20294 1.21713 1.22294 1.21117 0.92654 0.81945 1.01403 1.22102 0.93753 0.92990 0.86395 0.93244 1.88471 1.60831 1.37239 1.37964 1.22523 0.92985 0.86482 1.00654 1.21120 0.96151 0.99680 0.98080 1.19510 0.97808 0.93258 0.97220 1.20980 0.96864 0.97379 0.98929 1.20971 0.98411 0.98451 0.97019 1.20958 0.99926 0.93480 0.99989 1.21042 0.95377 0.97928 0.98310 1.20570 0.97330 0.96097 0.95444 0.92846 0.94748 0.93823 0.93922 0.93336 0.95248 0.92259 0.93977 0.87640 0.94228 0.93907 0.89285 0.90059 0.90766 0.86693 0.86658 0.86427 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.19 37.16 0.34 -2.54 16 2 C 0.16 3.34 3.37 -67.92 -0.23 3.12 16 3 C -0.14 -2.92 9.11 37.16 0.34 -2.58 16 4 N -0.57 -13.81 2.31 -165.66 -0.38 -14.19 16 5 C -0.23 -6.12 7.38 -15.06 -0.11 -6.23 16 6 H 0.06 1.55 7.14 -52.49 -0.37 1.17 16 7 C 0.02 0.44 4.96 -17.43 -0.09 0.36 16 8 N -0.89 -25.85 11.43 55.49 0.63 -25.21 16 9 Si 0.89 22.48 29.60 -169.99 -5.03 17.45 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 13 C 0.16 3.61 4.60 -4.04 -0.02 3.60 16 14 C 0.11 2.22 3.00 -27.90 -0.08 2.14 16 15 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 16 O -0.33 -7.19 9.69 -35.23 -0.34 -7.53 16 17 C 0.05 0.86 6.85 37.15 0.25 1.12 16 18 C -0.11 -1.73 6.01 -27.87 -0.17 -1.90 16 19 C -0.08 -1.31 5.77 -104.64 -0.60 -1.92 16 20 C -0.12 -1.81 9.67 -39.51 -0.38 -2.19 16 21 C -0.13 -1.79 10.05 -39.64 -0.40 -2.19 16 22 C -0.13 -1.81 10.03 -39.76 -0.40 -2.21 16 23 C -0.11 -1.81 9.07 -39.62 -0.36 -2.17 16 24 C -0.09 -1.72 5.46 -104.66 -0.57 -2.29 16 25 H 0.05 1.07 7.32 -51.93 -0.38 0.69 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.83 7.77 -51.93 -0.40 0.43 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 1.29 7.50 -51.93 -0.39 0.91 16 32 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 33 H 0.11 2.87 5.48 -51.93 -0.28 2.58 16 34 H 0.04 0.85 6.25 -51.93 -0.32 0.53 16 35 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 36 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 42 H 0.12 1.97 6.52 -52.49 -0.34 1.63 16 LS Contribution 332.55 15.07 5.01 5.01 Total: -1.00 -29.89 332.55 -9.29 -39.18 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.70 Total: 1.20 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -2.48 Total: -15.90 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.25 Total: -39.40 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.34 Total: -7.53 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.89 -9.29 -39.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080216238.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.113 kcal (2) G-P(sol) polarization free energy of solvation -29.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds