Wall clock time and date at job start Mon Mar 30 2020 07:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47197 * 2 1 4 4 N 1.46507 * 109.47142 * 119.99564 * 2 1 3 5 5 C 1.36932 * 119.99992 * 294.91679 * 4 2 1 6 6 H 1.08000 * 120.00230 * 37.24480 * 5 4 2 7 7 C 1.38816 * 120.00022 * 217.25116 * 5 4 2 8 8 N 1.31620 * 120.00025 * 21.14576 * 7 5 4 9 9 Si 1.86794 * 120.00117 * 201.14554 * 7 5 4 10 10 H 1.48502 * 109.47146 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47265 * 119.99639 * 9 7 5 12 12 H 1.48501 * 109.47473 * 239.99804 * 9 7 5 13 13 C 1.46499 * 119.99848 * 114.91620 * 4 2 1 14 14 C 1.52998 * 109.46913 * 270.00205 * 13 4 2 15 15 H 1.08999 * 109.34033 * 59.67125 * 14 13 4 16 16 O 1.42725 * 109.33923 * 299.99904 * 14 13 4 17 17 C 1.43208 * 113.14097 * 188.22319 * 16 14 13 18 18 C 1.52976 * 108.46879 * 70.70574 * 17 16 14 19 19 C 1.50742 * 109.70684 * 310.80956 * 18 17 16 20 20 C 1.38596 * 118.76014 * 196.86109 * 19 18 17 21 21 C 1.38066 * 120.27557 * 180.17787 * 20 19 18 22 22 C 1.38261 * 119.86561 * 0.02562 * 21 20 19 23 23 C 1.37718 * 119.86443 * 359.87715 * 22 21 20 24 24 C 1.37782 * 121.43562 * 16.88852 * 19 18 17 25 25 H 1.09006 * 109.46844 * 303.31013 * 1 2 3 26 26 H 1.08999 * 109.46710 * 63.31170 * 1 2 3 27 27 H 1.08996 * 109.47027 * 183.31110 * 1 2 3 28 28 H 1.08996 * 109.47430 * 239.99792 * 2 1 3 29 29 H 1.08997 * 109.47162 * 181.61316 * 3 2 1 30 30 H 1.08998 * 109.46531 * 301.60638 * 3 2 1 31 31 H 1.08993 * 109.47320 * 61.60288 * 3 2 1 32 32 H 0.96996 * 120.00502 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.47171 * 150.00125 * 13 4 2 34 34 H 1.09004 * 109.47120 * 29.99804 * 13 4 2 35 35 H 1.09006 * 109.63593 * 311.01604 * 17 16 14 36 36 H 1.08998 * 109.63959 * 190.40502 * 17 16 14 37 37 H 1.09007 * 109.41705 * 70.86470 * 18 17 16 38 38 H 1.08995 * 109.42764 * 190.74232 * 18 17 16 39 39 H 1.08000 * 119.85768 * 0.15745 * 20 19 18 40 40 H 1.08000 * 120.06945 * 179.97438 * 21 20 19 41 41 H 1.07989 * 120.05387 * 179.90418 * 22 21 20 42 42 H 1.08001 * 119.76193 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 1.7756 -0.1651 2.4372 6 1 0.8330 0.3203 2.6432 7 6 2.7410 -0.2560 3.4305 8 7 4.0018 -0.4510 3.1069 9 14 2.2508 -0.1018 5.2264 10 1 0.7843 0.1111 5.3227 11 1 2.6181 -1.3464 5.9485 12 1 2.9601 1.0517 5.8359 13 6 2.7665 -1.9433 1.0648 14 6 1.7935 -3.1236 1.0928 15 1 1.0859 -3.0278 0.2693 16 8 1.0818 -3.1203 2.3300 17 6 0.2844 -4.2939 2.5238 18 6 1.2188 -5.4786 2.7756 19 6 2.2971 -5.5082 1.7227 20 6 3.0270 -6.6735 1.5483 21 6 4.0244 -6.7340 0.5955 22 6 4.2967 -5.6275 -0.1875 23 6 3.5702 -4.4703 -0.0157 24 6 2.5670 -4.4074 0.9393 25 1 -0.3633 0.5644 0.8589 26 1 -0.3633 0.4616 -0.9182 27 1 -0.3633 -1.0259 0.0594 28 1 1.8934 -0.5138 -0.8899 29 1 3.1296 1.4427 -0.0289 30 1 1.6533 1.9645 -0.8752 31 1 1.7004 1.9480 0.9039 32 1 4.6764 -0.5149 3.8010 33 1 3.4715 -2.0338 1.8911 34 1 3.3112 -1.9438 0.1206 35 1 -0.3134 -4.4819 1.6318 36 1 -0.3701 -4.1541 3.3841 37 1 1.6759 -5.3767 3.7599 38 1 0.6474 -6.4059 2.7356 39 1 2.8148 -7.5375 2.1604 40 1 4.5913 -7.6436 0.4627 41 1 5.0771 -5.6710 -0.9326 42 1 3.7840 -3.6070 -0.6285 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080216238.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:18 Heat of formation + Delta-G solvation = -18.657218 kcal Electronic energy + Delta-G solvation = -22511.812091 eV Core-core repulsion = 19456.529285 eV Total energy + Delta-G solvation = -3055.282806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.20413 -38.58487 -37.83459 -34.45944 -33.98746 -32.94720 -31.35246 -30.13731 -28.14255 -27.71582 -25.81769 -24.67025 -24.01417 -22.22658 -21.25055 -20.85083 -18.29829 -17.87360 -17.25942 -16.63858 -16.59951 -16.11279 -15.83075 -15.41656 -15.28137 -14.76042 -14.46934 -14.40696 -14.13202 -13.74734 -13.55048 -13.24241 -13.11485 -12.90891 -12.87378 -12.77117 -12.59889 -12.50069 -12.23306 -12.06269 -11.80608 -11.69582 -11.56144 -11.36639 -11.22225 -10.40128 -10.30179 -9.64567 -9.47799 -8.41811 -7.69007 -5.26862 0.45939 0.49932 1.43781 1.48181 1.56316 2.58555 2.84987 3.11697 3.40001 3.63423 3.80054 3.94038 4.03354 4.15132 4.27729 4.32600 4.34787 4.49156 4.49901 4.60261 4.63232 4.71821 4.76667 4.83824 4.89889 4.97162 4.99064 5.03078 5.12504 5.18989 5.21002 5.21273 5.25154 5.58104 5.62482 5.63504 5.70587 5.74631 5.79335 5.89265 6.15430 6.51558 6.66504 7.30632 8.00874 8.51332 9.27535 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015961 B = 0.007351 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.839091 B = 3807.982371 C = 4384.916206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.151 3.849 3 C -0.135 4.135 4 N -0.585 5.585 5 C -0.214 4.214 6 H 0.046 0.954 7 C -0.032 4.032 8 N -0.921 5.921 9 Si 0.940 3.060 10 H -0.272 1.272 11 H -0.298 1.298 12 H -0.296 1.296 13 C 0.161 3.839 14 C 0.122 3.878 15 H 0.047 0.953 16 O -0.370 6.370 17 C 0.045 3.955 18 C -0.108 4.108 19 C -0.097 4.097 20 C -0.125 4.125 21 C -0.124 4.124 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.124 4.124 25 H 0.035 0.965 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.058 0.942 29 H 0.027 0.973 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.243 0.757 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.144 0.856 40 H 0.152 0.848 41 H 0.145 0.855 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.825 -11.887 -6.931 14.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.045 3.955 3 C -0.193 4.193 4 N -0.305 5.305 5 C -0.345 4.345 6 H 0.063 0.937 7 C -0.228 4.228 8 N -0.567 5.567 9 Si 0.770 3.230 10 H -0.197 1.197 11 H -0.226 1.226 12 H -0.223 1.223 13 C 0.034 3.966 14 C 0.062 3.938 15 H 0.065 0.935 16 O -0.288 6.288 17 C -0.032 4.032 18 C -0.145 4.145 19 C -0.097 4.097 20 C -0.143 4.143 21 C -0.142 4.142 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.125 4.125 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.119 0.881 37 H 0.090 0.910 38 H 0.128 0.872 39 H 0.162 0.838 40 H 0.169 0.831 41 H 0.163 0.837 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.696 -11.696 -6.708 13.980 hybrid contribution 0.033 0.090 1.098 1.103 sum -3.663 -11.606 -5.609 13.400 Atomic orbital electron populations 1.22038 0.97003 1.00312 1.00614 1.20685 0.93424 0.92471 0.88917 1.21922 0.99408 0.97645 1.00354 1.43964 1.63983 1.20889 1.01675 1.18781 0.95956 1.31480 0.88285 0.93688 1.25505 0.94573 1.01700 1.00983 1.70079 0.99976 1.54876 1.31734 0.85629 0.77913 0.76193 0.83220 1.19682 1.22565 1.22316 1.20913 0.92717 0.82982 0.99958 1.21660 0.93125 0.93102 0.85930 0.93510 1.88369 1.61832 1.39992 1.38608 1.22768 0.93134 0.85646 1.01672 1.21107 0.95839 1.00430 0.97102 1.19796 0.98827 0.93712 0.97380 1.21340 0.96369 0.97350 0.99220 1.21440 0.97739 0.99360 0.95640 1.21311 0.99866 0.92785 1.00496 1.21155 0.95754 0.99035 0.98384 1.20501 0.98642 0.95853 0.97540 0.94568 0.91301 0.94316 0.92365 0.95390 0.91457 0.94516 0.94722 0.91651 0.93562 0.92768 0.88110 0.91019 0.87245 0.83794 0.83070 0.83701 0.86120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 9.19 71.98 0.66 -4.45 16 2 C 0.15 6.20 3.37 44.99 0.15 6.36 16 3 C -0.13 -5.38 9.11 71.98 0.66 -4.73 16 4 N -0.59 -28.90 2.31 -678.01 -1.57 -30.47 16 5 C -0.21 -11.81 7.38 84.04 0.62 -11.19 16 6 H 0.05 2.55 7.14 -2.91 -0.02 2.53 16 7 C -0.03 -1.82 4.96 84.86 0.42 -1.40 16 8 N -0.92 -55.34 11.43 21.65 0.25 -55.09 16 9 Si 0.94 47.44 29.60 68.60 2.03 49.47 16 10 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.30 -15.29 7.11 99.48 0.71 -14.58 16 12 H -0.30 -14.78 7.11 99.48 0.71 -14.08 16 13 C 0.16 7.71 4.60 86.38 0.40 8.10 16 14 C 0.12 5.10 3.00 29.84 0.09 5.19 16 15 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 16 O -0.37 -16.51 9.69 -148.98 -1.44 -17.95 16 17 C 0.04 1.47 6.85 71.97 0.49 1.97 16 18 C -0.11 -3.13 6.01 29.85 0.18 -2.95 16 19 C -0.10 -3.14 5.77 -19.87 -0.11 -3.26 16 20 C -0.13 -3.27 9.67 22.31 0.22 -3.06 16 21 C -0.12 -2.97 10.05 22.23 0.22 -2.75 16 22 C -0.13 -3.37 10.03 22.15 0.22 -3.14 16 23 C -0.13 -4.12 9.07 22.24 0.20 -3.91 16 24 C -0.12 -4.57 5.46 -19.89 -0.11 -4.68 16 25 H 0.04 1.42 7.32 -2.38 -0.02 1.40 16 26 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.06 2.20 7.77 -2.39 -0.02 2.19 16 29 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.04 1.60 7.50 -2.39 -0.02 1.58 16 32 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 33 H 0.07 3.72 5.48 -2.39 -0.01 3.71 16 34 H 0.05 2.07 6.25 -2.38 -0.01 2.05 16 35 H 0.05 1.63 8.07 -2.38 -0.02 1.61 16 36 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.07 2.20 8.14 -2.38 -0.02 2.19 16 38 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 40 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 41 H 0.15 2.97 8.06 -2.92 -0.02 2.94 16 42 H 0.12 3.89 6.52 -2.91 -0.02 3.87 16 Total: -1.00 -66.82 332.55 4.56 -62.26 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.98 Total: 15.68 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: 4.31 Total: -23.90 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -1.32 Total: -85.56 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -1.44 Total: -17.95 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -66.82 4.56 -62.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080216238.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.606 kcal (2) G-P(sol) polarization free energy of solvation -66.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds