Wall clock time and date at job start Mon Mar 30 2020 07:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46965 * 2 1 4 4 H 1.09002 * 110.43217 * 303.90999 * 3 2 1 5 5 C 1.54268 * 110.48920 * 66.45376 * 3 2 1 6 6 C 1.53867 * 106.60058 * 142.28951 * 5 3 2 7 7 C 1.54269 * 106.59881 * 359.97438 * 6 5 3 8 8 H 1.09003 * 110.48691 * 95.20458 * 7 6 5 9 9 N 1.46505 * 110.48848 * 217.71274 * 7 6 5 10 10 C 1.39666 * 119.99698 * 273.54855 * 9 7 6 11 11 C 1.39010 * 120.04605 * 0.02562 * 10 9 7 12 12 C 1.38142 * 120.06387 * 180.23654 * 11 10 9 13 13 C 1.38173 * 120.14514 * 359.48145 * 12 11 10 14 14 C 1.38915 * 120.07673 * 0.51872 * 13 12 11 15 15 O 1.35751 * 120.03497 * 179.72097 * 14 13 12 16 16 C 1.34823 * 117.00270 * 174.48127 * 15 14 13 17 17 H 1.08004 * 120.00526 * 5.06406 * 16 15 14 18 18 C 1.38657 * 119.99926 * 185.05459 * 16 15 14 19 19 N 1.31557 * 120.00122 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99814 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47221 * 60.00199 * 20 18 16 22 22 H 1.48502 * 109.47005 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47231 * 299.99978 * 20 18 16 24 24 C 1.38756 * 120.03690 * 179.97438 * 10 9 7 25 25 C 1.54884 * 110.48863 * 181.22976 * 3 2 1 26 26 H 1.08999 * 109.46865 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47204 * 299.99743 * 1 2 3 28 28 H 1.08996 * 109.47170 * 60.00260 * 1 2 3 29 29 H 1.08998 * 109.47204 * 240.00256 * 2 1 3 30 30 H 1.08996 * 109.47170 * 119.99740 * 2 1 3 31 31 H 1.08998 * 110.02776 * 23.00223 * 5 3 2 32 32 H 1.08998 * 110.07257 * 261.59665 * 5 3 2 33 33 H 1.09000 * 110.03250 * 240.71704 * 6 5 3 34 34 H 1.08998 * 110.07453 * 119.30629 * 6 5 3 35 35 H 0.96995 * 119.99643 * 93.54571 * 9 7 6 36 36 H 1.08001 * 119.96382 * 359.95046 * 11 10 9 37 37 H 1.08004 * 119.92756 * 179.72201 * 12 11 10 38 38 H 1.07997 * 119.96114 * 180.25823 * 13 12 11 39 39 H 0.97000 * 119.99662 * 180.02562 * 19 18 16 40 40 H 1.07994 * 120.06863 * 359.97438 * 24 10 9 41 41 H 1.09000 * 110.76123 * 85.06213 * 25 3 2 42 42 H 1.09009 * 110.75609 * 321.69379 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6296 1.9912 -0.8477 5 6 1.6757 2.1440 1.3248 6 6 2.8694 3.0442 1.6883 7 6 3.9179 2.8579 0.5720 8 1 3.8145 3.6377 -0.1825 9 7 5.2712 2.8654 1.1332 10 6 5.9425 4.0757 1.3209 11 6 5.3274 5.2736 0.9760 12 6 5.9929 6.4705 1.1570 13 6 7.2673 6.4821 1.6908 14 6 7.8877 5.2885 2.0375 15 8 9.1420 5.3004 2.5567 16 6 9.6415 4.1209 2.9775 17 1 9.0827 3.2104 2.8192 18 6 10.8728 4.0769 3.6135 19 7 11.5535 5.1860 3.8066 20 14 11.5653 2.4426 4.1959 21 1 11.7287 1.5320 3.0343 22 1 12.8846 2.6654 4.8402 23 1 10.6328 1.8313 5.1768 24 6 7.2241 4.0838 1.8528 25 6 3.5883 1.4702 -0.0311 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5148 1.4029 2.1077 32 1 0.7784 2.7488 1.1934 33 1 3.2880 2.7400 2.6476 34 1 2.5524 4.0861 1.7330 35 1 5.7008 2.0299 1.3744 36 1 4.3299 5.2682 0.5620 37 1 5.5146 7.3997 0.8841 38 1 7.7833 7.4198 1.8349 39 1 12.4151 5.1551 4.2512 40 1 7.7038 3.1547 2.1226 41 1 3.9555 1.3966 -1.0548 42 1 4.0014 0.6728 0.5868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080453092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:31 Heat of formation + Delta-G solvation = -23.866594 kcal Electronic energy + Delta-G solvation = -20712.455170 eV Core-core repulsion = 17656.946469 eV Total energy + Delta-G solvation = -3055.508702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.43389 -38.56325 -36.65610 -34.52115 -32.41124 -32.04349 -29.30066 -28.86687 -28.04762 -26.14666 -25.19426 -22.96611 -21.77602 -21.21323 -20.22526 -19.46293 -17.77152 -17.31878 -16.16764 -15.76481 -15.12650 -15.04526 -14.41516 -14.24219 -13.86065 -13.60239 -13.54143 -13.42729 -13.13380 -12.79957 -12.46408 -12.27339 -12.17839 -11.66912 -11.58342 -11.42913 -11.20848 -11.03307 -10.84621 -10.72807 -10.69294 -10.66464 -10.53478 -10.44060 -10.31594 -9.34798 -9.31614 -8.71584 -7.30514 -6.70750 -6.37311 -3.96464 2.43395 2.62331 3.16272 3.18159 3.20187 3.79613 4.02720 4.40942 4.45282 4.64934 4.76030 4.96800 5.02925 5.09810 5.19561 5.31788 5.40029 5.41111 5.42481 5.47723 5.55006 5.66515 5.71391 5.74569 5.81494 5.90423 5.92975 6.00754 6.04862 6.09975 6.24855 6.28834 6.33913 6.44102 6.71048 6.73477 7.10195 7.19700 7.44346 7.54255 7.73306 8.09006 8.09641 8.27781 9.08812 9.82139 10.81137 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022264 B = 0.003682 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.330964 B = 7603.580312 C = 8620.756304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.091 4.091 4 H 0.075 0.925 5 C -0.117 4.117 6 C -0.142 4.142 7 C 0.154 3.846 8 H 0.081 0.919 9 N -0.747 5.747 10 C 0.250 3.750 11 C -0.279 4.279 12 C -0.041 4.041 13 C -0.238 4.238 14 C 0.189 3.811 15 O -0.179 6.179 16 C -0.389 4.389 17 H 0.090 0.910 18 C 0.038 3.962 19 N -0.866 5.866 20 Si 0.939 3.061 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.271 1.271 24 C -0.303 4.303 25 C -0.126 4.126 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.393 0.607 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.269 0.731 40 H 0.123 0.877 41 H 0.069 0.931 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.856 -8.445 -6.643 21.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.109 4.109 4 H 0.093 0.907 5 C -0.155 4.155 6 C -0.181 4.181 7 C 0.048 3.952 8 H 0.099 0.901 9 N -0.378 5.378 10 C 0.149 3.851 11 C -0.302 4.302 12 C -0.060 4.060 13 C -0.258 4.258 14 C 0.135 3.865 15 O -0.082 6.082 16 C -0.465 4.465 17 H 0.107 0.893 18 C -0.166 4.166 19 N -0.501 5.501 20 Si 0.764 3.236 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.327 4.327 25 C -0.164 4.164 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.228 0.772 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.079 0.921 40 H 0.141 0.859 41 H 0.088 0.912 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.615 -8.137 -6.572 21.352 hybrid contribution 0.480 -1.180 0.435 1.346 sum -18.135 -9.317 -6.137 21.292 Atomic orbital electron populations 1.21785 0.95949 1.01377 1.01892 1.21556 0.95799 0.96081 1.01950 1.21958 0.94840 0.95941 0.98205 0.90651 1.22180 0.97969 0.98447 0.96856 1.22690 0.95630 0.99895 0.99875 1.21600 0.82127 0.97104 0.94391 0.90087 1.44609 1.15493 1.05894 1.71779 1.17480 0.90365 0.85507 0.91752 1.20091 1.01414 0.91441 1.17233 1.20375 0.93407 0.96475 0.95701 1.20030 0.96826 0.96104 1.12882 1.19072 0.84912 0.92633 0.89895 1.83984 1.22877 1.33818 1.67541 1.21245 1.03195 0.84200 1.37876 0.89285 1.25262 0.95723 0.99006 0.96572 1.70033 1.13513 1.26696 1.39860 0.85815 0.78382 0.80328 0.79066 1.19614 1.20337 1.19620 1.20506 0.96213 0.98829 1.17122 1.22788 0.95461 0.97008 1.01176 0.93008 0.92580 0.92832 0.92074 0.91944 0.91854 0.92051 0.91263 0.91685 0.77243 0.87843 0.87294 0.86984 0.92102 0.85895 0.91190 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.76 37.16 0.36 -0.66 16 2 C -0.12 -0.86 5.32 -26.73 -0.14 -1.01 16 3 C -0.09 -0.76 2.90 -88.96 -0.26 -1.01 16 4 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 5 C -0.12 -1.04 5.51 -25.62 -0.14 -1.19 16 6 C -0.14 -1.61 6.54 -25.62 -0.17 -1.77 16 7 C 0.15 1.86 2.81 -66.28 -0.19 1.68 16 8 H 0.08 1.03 6.61 -51.93 -0.34 0.68 16 9 N -0.75 -11.29 5.29 -50.59 -0.27 -11.55 16 10 C 0.25 4.77 6.65 -83.81 -0.56 4.21 16 11 C -0.28 -5.08 9.22 -39.33 -0.36 -5.44 16 12 C -0.04 -0.77 10.03 -39.64 -0.40 -1.16 16 13 C -0.24 -5.30 9.99 -39.35 -0.39 -5.69 16 14 C 0.19 4.77 6.65 -39.13 -0.26 4.51 16 15 O -0.18 -5.27 9.76 0.07 0.00 -5.27 16 16 C -0.39 -11.13 9.49 30.89 0.29 -10.84 16 17 H 0.09 2.37 5.20 -52.48 -0.27 2.09 16 18 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 19 N -0.87 -25.92 13.67 55.48 0.76 -25.16 16 20 Si 0.94 20.92 29.55 -169.99 -5.02 15.89 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 23 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 24 C -0.30 -6.83 9.01 -39.19 -0.35 -7.18 16 25 C -0.13 -1.23 5.92 -24.76 -0.15 -1.37 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.38 7.48 -51.93 -0.39 -0.01 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.48 8.05 -51.93 -0.42 0.06 16 31 H 0.06 0.56 7.77 -51.93 -0.40 0.15 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.88 8.04 -51.93 -0.42 0.47 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.39 5.57 8.54 -40.82 -0.35 5.23 16 36 H 0.10 1.63 6.28 -52.49 -0.33 1.30 16 37 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 38 H 0.11 2.43 8.06 -52.49 -0.42 2.00 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.12 2.78 5.64 -52.49 -0.30 2.49 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.70 7.94 -51.92 -0.41 0.28 16 LS Contribution 337.82 15.07 5.09 5.09 Total: -1.00 -30.91 337.82 -8.82 -39.72 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.57 Total: 7.24 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -2.81 Total: -25.96 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.49 Total: -36.71 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: 0.00 Total: -5.27 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.91 -8.82 -39.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080453092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.857 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds