Wall clock time and date at job start Mon Mar 30 2020 07:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46965 * 2 1 4 4 H 1.09002 * 110.43217 * 303.90999 * 3 2 1 5 5 C 1.54268 * 110.48920 * 66.45376 * 3 2 1 6 6 C 1.53867 * 106.60058 * 142.28951 * 5 3 2 7 7 C 1.54269 * 106.59881 * 359.97438 * 6 5 3 8 8 H 1.09003 * 110.48691 * 95.20458 * 7 6 5 9 9 N 1.46505 * 110.48848 * 217.71274 * 7 6 5 10 10 C 1.39666 * 119.99698 * 273.54855 * 9 7 6 11 11 C 1.39010 * 120.04605 * 0.02562 * 10 9 7 12 12 C 1.38142 * 120.06387 * 180.23654 * 11 10 9 13 13 C 1.38173 * 120.14514 * 359.48145 * 12 11 10 14 14 C 1.38915 * 120.07673 * 0.51872 * 13 12 11 15 15 O 1.35751 * 120.03497 * 179.72097 * 14 13 12 16 16 C 1.34823 * 117.00270 * 174.48127 * 15 14 13 17 17 H 1.08004 * 120.00526 * 5.06406 * 16 15 14 18 18 C 1.38657 * 119.99926 * 185.05459 * 16 15 14 19 19 N 1.31557 * 120.00122 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99814 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47221 * 60.00199 * 20 18 16 22 22 H 1.48502 * 109.47005 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47231 * 299.99978 * 20 18 16 24 24 C 1.38756 * 120.03690 * 179.97438 * 10 9 7 25 25 C 1.54884 * 110.48863 * 181.22976 * 3 2 1 26 26 H 1.08999 * 109.46865 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47204 * 299.99743 * 1 2 3 28 28 H 1.08996 * 109.47170 * 60.00260 * 1 2 3 29 29 H 1.08998 * 109.47204 * 240.00256 * 2 1 3 30 30 H 1.08996 * 109.47170 * 119.99740 * 2 1 3 31 31 H 1.08998 * 110.02776 * 23.00223 * 5 3 2 32 32 H 1.08998 * 110.07257 * 261.59665 * 5 3 2 33 33 H 1.09000 * 110.03250 * 240.71704 * 6 5 3 34 34 H 1.08998 * 110.07453 * 119.30629 * 6 5 3 35 35 H 0.96995 * 119.99643 * 93.54571 * 9 7 6 36 36 H 1.08001 * 119.96382 * 359.95046 * 11 10 9 37 37 H 1.08004 * 119.92756 * 179.72201 * 12 11 10 38 38 H 1.07997 * 119.96114 * 180.25823 * 13 12 11 39 39 H 0.97000 * 119.99662 * 180.02562 * 19 18 16 40 40 H 1.07994 * 120.06863 * 359.97438 * 24 10 9 41 41 H 1.09000 * 110.76123 * 85.06213 * 25 3 2 42 42 H 1.09009 * 110.75609 * 321.69379 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6296 1.9912 -0.8477 5 6 1.6757 2.1440 1.3248 6 6 2.8694 3.0442 1.6883 7 6 3.9179 2.8579 0.5720 8 1 3.8145 3.6377 -0.1825 9 7 5.2712 2.8654 1.1332 10 6 5.9425 4.0757 1.3209 11 6 5.3274 5.2736 0.9760 12 6 5.9929 6.4705 1.1570 13 6 7.2673 6.4821 1.6908 14 6 7.8877 5.2885 2.0375 15 8 9.1420 5.3004 2.5567 16 6 9.6415 4.1209 2.9775 17 1 9.0827 3.2104 2.8192 18 6 10.8728 4.0769 3.6135 19 7 11.5535 5.1860 3.8066 20 14 11.5653 2.4426 4.1959 21 1 11.7287 1.5320 3.0343 22 1 12.8846 2.6654 4.8402 23 1 10.6328 1.8313 5.1768 24 6 7.2241 4.0838 1.8528 25 6 3.5883 1.4702 -0.0311 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.5148 1.4029 2.1077 32 1 0.7784 2.7488 1.1934 33 1 3.2880 2.7400 2.6476 34 1 2.5524 4.0861 1.7330 35 1 5.7008 2.0299 1.3744 36 1 4.3299 5.2682 0.5620 37 1 5.5146 7.3997 0.8841 38 1 7.7833 7.4198 1.8349 39 1 12.4151 5.1551 4.2512 40 1 7.7038 3.1547 2.1226 41 1 3.9555 1.3966 -1.0548 42 1 4.0014 0.6728 0.5868 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080453092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:30 Heat of formation + Delta-G solvation = -41.443192 kcal Electronic energy + Delta-G solvation = -20713.217349 eV Core-core repulsion = 17656.946469 eV Total energy + Delta-G solvation = -3056.270880 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.87296 -39.86101 -38.24885 -35.74476 -34.22011 -33.23574 -30.76838 -30.08478 -29.24063 -27.34536 -27.05837 -23.73488 -23.28829 -22.66847 -21.31015 -20.41494 -19.60018 -18.99093 -17.20481 -17.10123 -16.62016 -16.42871 -15.92749 -15.61056 -15.48811 -15.02066 -14.54606 -14.46420 -14.28632 -14.07807 -13.80126 -13.68083 -13.48205 -12.89055 -12.81703 -12.58226 -12.47039 -12.24863 -12.14246 -12.07079 -12.01518 -11.74090 -11.39764 -11.31586 -11.27136 -11.21602 -10.90276 -10.57331 -9.10160 -8.44988 -8.21061 -6.13417 0.77135 0.92879 1.33810 1.45777 1.50526 2.18829 2.55684 2.89599 3.26765 3.59146 3.64519 3.70172 3.91374 4.18824 4.25664 4.35494 4.42255 4.44764 4.53097 4.60113 4.62454 4.69619 4.76012 4.76918 4.85103 4.95475 5.00376 5.07565 5.13895 5.16405 5.18054 5.23123 5.28415 5.31847 5.38264 5.46792 5.52864 5.60412 5.76298 5.81362 6.05722 6.13203 6.64023 6.89277 7.00227 7.83746 8.78540 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022264 B = 0.003682 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.330964 B = 7603.580312 C = 8620.756304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.084 4.084 4 H 0.084 0.916 5 C -0.111 4.111 6 C -0.140 4.140 7 C 0.147 3.853 8 H 0.084 0.916 9 N -0.738 5.738 10 C 0.258 3.742 11 C -0.264 4.264 12 C -0.026 4.026 13 C -0.263 4.263 14 C 0.152 3.848 15 O -0.232 6.232 16 C -0.412 4.412 17 H 0.098 0.902 18 C -0.024 4.024 19 N -0.923 5.923 20 Si 1.018 2.982 21 H -0.257 1.257 22 H -0.271 1.271 23 H -0.258 1.258 24 C -0.318 4.318 25 C -0.121 4.121 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.398 0.602 36 H 0.140 0.860 37 H 0.152 0.848 38 H 0.106 0.894 39 H 0.272 0.728 40 H 0.113 0.887 41 H 0.074 0.926 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.942 -10.131 -7.815 25.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.103 4.103 4 H 0.102 0.898 5 C -0.149 4.149 6 C -0.179 4.179 7 C 0.042 3.958 8 H 0.102 0.898 9 N -0.367 5.367 10 C 0.154 3.846 11 C -0.287 4.287 12 C -0.045 4.045 13 C -0.284 4.284 14 C 0.101 3.899 15 O -0.139 6.139 16 C -0.488 4.488 17 H 0.116 0.884 18 C -0.221 4.221 19 N -0.561 5.561 20 Si 0.838 3.162 21 H -0.182 1.182 22 H -0.195 1.195 23 H -0.183 1.183 24 C -0.342 4.342 25 C -0.159 4.159 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.232 0.768 36 H 0.158 0.842 37 H 0.169 0.831 38 H 0.124 0.876 39 H 0.081 0.919 40 H 0.130 0.870 41 H 0.093 0.907 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.784 -9.853 -7.779 25.142 hybrid contribution 1.111 -0.623 0.654 1.432 sum -20.673 -10.476 -7.125 24.246 Atomic orbital electron populations 1.21777 0.95276 1.01804 1.02077 1.21536 0.96355 0.95337 1.02005 1.21933 0.93570 0.96645 0.98106 0.89792 1.22143 0.97279 0.98213 0.97221 1.22642 0.96190 1.00439 0.98620 1.21883 0.80348 0.98880 0.94711 0.89804 1.44788 1.16463 1.04759 1.70656 1.17568 0.89241 0.87556 0.90285 1.20553 1.02507 0.90572 1.15019 1.20824 0.91665 0.98671 0.93343 1.20256 0.98537 0.95070 1.14555 1.19644 0.84516 0.94753 0.90978 1.83944 1.25333 1.34509 1.70094 1.21749 1.03955 0.84670 1.38401 0.88424 1.26594 0.95683 1.03512 0.96342 1.70187 1.14338 1.29625 1.41957 0.84659 0.77701 0.74918 0.78970 1.18153 1.19524 1.18281 1.20517 0.97789 0.97554 1.18325 1.22769 0.96640 0.95324 1.01190 0.92556 0.92611 0.92415 0.91688 0.92300 0.91678 0.90854 0.92985 0.91728 0.76755 0.84222 0.83084 0.87602 0.91885 0.86956 0.90680 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.76 71.98 0.70 -0.87 16 2 C -0.11 -1.36 5.32 30.60 0.16 -1.19 16 3 C -0.08 -1.11 2.90 -9.72 -0.03 -1.14 16 4 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 5 C -0.11 -1.62 5.51 31.32 0.17 -1.45 16 6 C -0.14 -2.77 6.54 31.32 0.20 -2.56 16 7 C 0.15 3.09 2.81 46.06 0.13 3.22 16 8 H 0.08 1.77 6.61 -2.39 -0.02 1.76 16 9 N -0.74 -20.81 5.29 -313.97 -1.66 -22.47 16 10 C 0.26 9.45 6.65 38.20 0.25 9.71 16 11 C -0.26 -8.79 9.22 22.43 0.21 -8.59 16 12 C -0.03 -0.94 10.03 22.23 0.22 -0.72 16 13 C -0.26 -11.97 9.99 22.42 0.22 -11.75 16 14 C 0.15 8.03 6.65 22.56 0.15 8.18 16 15 O -0.23 -14.62 9.76 -22.68 -0.22 -14.84 16 16 C -0.41 -24.84 9.49 67.92 0.64 -24.20 16 17 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 18 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16 19 N -0.92 -58.14 13.67 21.61 0.30 -57.84 16 20 Si 1.02 43.94 29.55 68.60 2.03 45.97 16 21 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 24 C -0.32 -14.65 9.01 22.52 0.20 -14.44 16 25 C -0.12 -1.99 5.92 31.87 0.19 -1.80 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.05 0.58 7.48 -2.39 -0.02 0.56 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.75 8.05 -2.39 -0.02 0.73 16 31 H 0.06 0.96 7.77 -2.39 -0.02 0.94 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 1.22 8.04 -2.39 -0.02 1.20 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.40 10.69 8.54 -92.71 -0.79 9.90 16 36 H 0.14 3.70 6.28 -2.91 -0.02 3.68 16 37 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 38 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 39 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 40 H 0.11 5.29 5.64 -2.91 -0.02 5.27 16 41 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.07 1.20 7.94 -2.38 -0.02 1.18 16 Total: -1.00 -71.69 337.82 4.56 -67.13 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.22 Total: 30.60 kcal Atomic # 6 Polarization: -52.46 SS G_CDS: 3.90 Total: -48.55 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -1.37 Total: -80.31 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.22 Total: -14.84 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -71.69 4.56 -67.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080453092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.687 kcal (2) G-P(sol) polarization free energy of solvation -71.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds