Wall clock time and date at job start Mon Mar 30 2020 07:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47478 * 2 1 4 4 H 1.09001 * 109.46512 * 55.00025 * 3 2 1 5 5 N 1.46900 * 109.46868 * 295.00294 * 3 2 1 6 6 C 1.50697 * 109.47410 * 175.00310 * 3 2 1 7 7 C 1.38266 * 119.94102 * 79.72615 * 6 3 2 8 8 C 1.38156 * 120.05120 * 179.72717 * 7 6 3 9 9 C 1.38733 * 119.94249 * 0.54653 * 8 7 6 10 10 O 1.35898 * 120.05548 * 179.74968 * 9 8 7 11 11 C 1.42896 * 116.99799 * 359.97438 * 10 9 8 12 12 C 1.53004 * 109.47145 * 180.02562 * 11 10 9 13 13 C 1.50692 * 115.55304 * 65.10863 * 12 11 10 14 14 H 1.08002 * 120.00172 * 266.11580 * 13 12 11 15 15 C 1.37877 * 120.00199 * 86.11506 * 13 12 11 16 16 N 1.31521 * 119.99729 * 353.70458 * 15 13 12 17 17 Si 1.86800 * 120.00411 * 173.70883 * 15 13 12 18 18 H 1.48498 * 109.47207 * 59.99694 * 17 15 13 19 19 H 1.48496 * 109.47207 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46806 * 299.99856 * 17 15 13 21 21 C 1.53005 * 117.49636 * 279.44060 * 12 11 10 22 22 C 1.53003 * 117.49811 * 210.78683 * 12 11 10 23 23 C 1.38732 * 119.88782 * 359.73079 * 9 8 7 24 24 C 1.38141 * 119.94605 * 359.97438 * 23 9 8 25 25 H 1.08996 * 109.47054 * 59.99514 * 1 2 3 26 26 H 1.08995 * 109.47062 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46773 * 299.99862 * 1 2 3 28 28 H 1.09012 * 109.46865 * 240.00021 * 2 1 3 29 29 H 1.09002 * 109.47263 * 120.00877 * 2 1 3 30 30 H 1.00893 * 111.00406 * 299.99764 * 5 3 2 31 31 H 1.00908 * 111.00171 * 63.95412 * 5 3 2 32 32 H 1.07990 * 119.97803 * 0.02562 * 7 6 3 33 33 H 1.07997 * 120.02554 * 180.27174 * 8 7 6 34 34 H 1.09003 * 109.47459 * 299.99594 * 11 10 9 35 35 H 1.09001 * 109.47209 * 60.00270 * 11 10 9 36 36 H 0.96997 * 119.99854 * 180.02562 * 16 15 13 37 37 H 1.08999 * 117.49520 * 0.02562 * 21 12 11 38 38 H 1.08998 * 117.50039 * 145.01916 * 21 12 11 39 39 H 1.09001 * 117.49326 * 214.97734 * 22 12 11 40 40 H 1.08997 * 117.49731 * 359.96348 * 22 12 11 41 41 H 1.08002 * 120.02721 * 179.97438 * 23 9 8 42 42 H 1.08004 * 119.97341 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 7 1.6514 2.0992 -1.2552 6 6 3.5420 1.4442 0.1238 7 6 4.3263 1.1972 -0.9878 8 6 5.7035 1.2039 -0.8781 9 6 6.2991 1.4475 0.3509 10 8 7.6535 1.4495 0.4625 11 6 8.4027 1.1928 -0.7269 12 6 9.8983 1.2350 -0.4067 13 6 10.3940 0.1598 0.5255 14 1 10.4582 0.3523 1.5863 15 6 10.7656 -1.0697 0.0243 16 7 10.5719 -1.3475 -1.2466 17 14 11.5440 -2.3409 1.1501 18 1 10.6020 -2.6715 2.2494 19 1 11.8496 -3.5691 0.3734 20 1 12.7997 -1.7925 1.7225 21 6 10.5627 2.6102 -0.3158 22 6 10.8450 1.7012 -1.5145 23 6 5.5097 1.6893 1.4658 24 6 4.1332 1.6876 1.3497 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5140 0.8899 30 1 2.0422 1.6180 -2.0512 31 1 0.6476 2.1684 -1.3314 32 1 3.8622 1.0037 -1.9435 33 1 6.3158 1.0152 -1.7475 34 1 8.1423 0.2080 -1.1150 35 1 8.1692 1.9512 -1.4742 36 1 10.8330 -2.2126 -1.5991 37 1 9.9342 3.4848 -0.4837 38 1 11.3586 2.7372 0.4180 39 1 11.8266 1.2304 -1.5688 40 1 10.4025 1.9773 -2.4716 41 1 5.9710 1.8788 2.4238 42 1 3.5182 1.8755 2.2174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088248990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:59 Heat of formation + Delta-G solvation = -1.621813 kcal Electronic energy + Delta-G solvation = -20826.948605 eV Core-core repulsion = 17772.404510 eV Total energy + Delta-G solvation = -3054.544096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.76661 -38.04773 -36.40486 -35.27817 -31.95395 -31.19827 -30.59784 -29.60491 -26.75776 -25.36163 -24.98312 -22.56970 -21.77468 -21.13022 -20.16241 -19.17038 -17.61872 -16.67577 -15.97936 -15.44132 -14.96351 -14.75318 -14.63400 -14.54480 -14.43828 -14.00031 -13.76610 -13.09198 -12.86962 -12.81155 -12.52237 -12.12697 -11.96147 -11.61975 -11.53766 -11.14212 -10.98659 -10.92771 -10.86391 -10.55487 -10.42588 -10.28045 -10.13776 -9.57997 -8.87804 -8.83557 -8.65402 -8.45768 -8.20860 -7.54935 -6.07356 -4.11586 1.68659 1.80139 3.31054 3.35003 3.38649 3.98320 4.06485 4.40060 4.51566 4.69035 4.82656 4.87398 5.11590 5.20698 5.23383 5.33245 5.35684 5.41733 5.49409 5.66996 5.73625 5.77709 5.88960 5.98631 5.99754 6.07685 6.20228 6.29679 6.34203 6.51230 6.55259 6.67456 6.74748 6.82459 6.84215 7.02169 7.04656 7.18440 7.30834 7.35958 7.44280 7.86721 8.21361 8.41357 8.89801 9.54050 11.02150 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023156 B = 0.003860 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.892872 B = 7252.172560 C = 7748.684378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.157 4.157 3 C 0.141 3.859 4 H 0.084 0.916 5 N -0.841 5.841 6 C -0.132 4.132 7 C -0.065 4.065 8 C -0.213 4.213 9 C 0.149 3.851 10 O -0.296 6.296 11 C 0.105 3.895 12 C 0.040 3.960 13 C -0.488 4.488 14 H 0.062 0.938 15 C 0.069 3.931 16 N -0.884 5.884 17 Si 0.892 3.108 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.206 4.206 22 C -0.146 4.146 23 C -0.161 4.161 24 C -0.076 4.076 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.339 0.661 31 H 0.338 0.662 32 H 0.113 0.887 33 H 0.127 0.873 34 H 0.068 0.932 35 H 0.030 0.970 36 H 0.261 0.739 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.127 0.873 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.693 3.869 0.128 17.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.197 4.197 3 C 0.030 3.970 4 H 0.102 0.898 5 N -0.371 5.371 6 C -0.133 4.133 7 C -0.084 4.084 8 C -0.232 4.232 9 C 0.101 3.899 10 O -0.208 6.208 11 C 0.031 3.969 12 C 0.040 3.960 13 C -0.526 4.526 14 H 0.080 0.920 15 C -0.133 4.133 16 N -0.521 5.521 17 Si 0.720 3.280 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.243 4.243 22 C -0.183 4.183 23 C -0.180 4.180 24 C -0.095 4.095 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.153 0.847 31 H 0.151 0.849 32 H 0.131 0.869 33 H 0.145 0.855 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.145 0.855 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.128 4.387 0.419 16.719 hybrid contribution -0.040 -1.810 -0.056 1.811 sum -16.167 2.577 0.363 16.376 Atomic orbital electron populations 1.21808 0.95896 1.01814 1.01592 1.22387 0.95714 0.98492 1.03088 1.20216 0.91662 0.91961 0.93205 0.89825 1.58956 1.15727 1.58372 1.04013 1.19402 0.94089 1.05931 0.93879 1.20539 0.92682 0.97613 0.97552 1.21322 0.95716 1.08503 0.97631 1.19271 0.84439 0.92770 0.93417 1.86192 1.12959 1.84124 1.37506 1.22615 0.92203 0.98879 0.83232 1.18711 0.86726 0.92186 0.98396 1.20364 1.43215 0.95979 0.93020 0.91987 1.24989 0.95268 0.97977 0.95108 1.69986 1.46539 1.22561 1.12975 0.86653 0.79996 0.80600 0.80778 1.20112 1.21279 1.20137 1.23006 1.04417 0.94670 1.02187 1.22529 1.01617 1.02757 0.91416 1.20384 0.92685 1.07160 0.97787 1.20645 0.93620 0.98563 0.96628 0.93021 0.92599 0.92531 0.91892 0.91139 0.84736 0.84869 0.86861 0.85489 0.91426 0.95200 0.92935 0.91516 0.90135 0.89487 0.91744 0.85466 0.86150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.68 37.16 0.36 -0.75 16 2 C -0.16 -1.45 5.55 -26.73 -0.15 -1.60 16 3 C 0.14 1.46 3.04 -68.87 -0.21 1.25 16 4 H 0.08 0.84 8.00 -51.93 -0.42 0.42 16 5 N -0.84 -8.01 9.01 -5.66 -0.05 -8.06 16 6 C -0.13 -1.79 4.96 -104.60 -0.52 -2.30 16 7 C -0.07 -0.96 9.29 -39.60 -0.37 -1.32 16 8 C -0.21 -3.72 9.04 -39.43 -0.36 -4.07 16 9 C 0.15 2.87 6.69 -39.22 -0.26 2.61 16 10 O -0.30 -6.69 10.06 -19.42 -0.20 -6.88 16 11 C 0.11 2.43 4.56 37.16 0.17 2.60 16 12 C 0.04 1.00 1.62 -155.66 -0.25 0.75 16 13 C -0.49 -13.48 8.77 -34.44 -0.30 -13.78 16 14 H 0.06 1.74 7.82 -52.49 -0.41 1.33 16 15 C 0.07 1.90 5.38 -17.82 -0.10 1.80 16 16 N -0.88 -24.72 12.88 55.43 0.71 -24.01 16 17 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 C -0.21 -4.56 9.96 -26.69 -0.27 -4.82 16 22 C -0.15 -3.38 9.37 -26.69 -0.25 -3.63 16 23 C -0.16 -2.70 9.99 -39.43 -0.39 -3.10 16 24 C -0.08 -1.07 9.66 -39.61 -0.38 -1.45 16 25 H 0.05 0.33 6.87 -51.93 -0.36 -0.03 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.34 3.05 7.35 -39.30 -0.29 2.77 16 31 H 0.34 2.53 7.55 -39.29 -0.30 2.24 16 32 H 0.11 1.39 6.67 -52.49 -0.35 1.04 16 33 H 0.13 2.22 6.30 -52.49 -0.33 1.88 16 34 H 0.07 1.67 7.66 -51.93 -0.40 1.27 16 35 H 0.03 0.63 7.61 -51.93 -0.40 0.23 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 39 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 40 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 42 H 0.12 1.35 8.03 -52.48 -0.42 0.93 16 LS Contribution 345.74 15.07 5.21 5.21 Total: -1.00 -29.06 345.74 -9.22 -38.28 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.60 Total: 7.07 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: -3.28 Total: -27.82 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.66 Total: -32.06 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.20 Total: -6.88 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.06 -9.22 -38.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088248990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.658 kcal (2) G-P(sol) polarization free energy of solvation -29.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds