Wall clock time and date at job start Mon Mar 30 2020 07:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47281 * 2 1 4 4 N 1.46903 * 109.47566 * 119.99829 * 2 1 3 5 5 C 1.46899 * 110.99718 * 74.27859 * 4 2 1 6 6 C 1.50705 * 109.47239 * 70.94832 * 5 4 2 7 7 H 1.07997 * 119.99750 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99975 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00156 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99701 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47053 * 89.99857 * 10 8 6 12 12 H 1.48510 * 109.47017 * 209.99708 * 10 8 6 13 13 H 1.48498 * 109.47006 * 329.99649 * 10 8 6 14 14 C 1.46897 * 111.00087 * 310.33069 * 4 2 1 15 15 C 1.53002 * 109.47444 * 201.65440 * 14 4 2 16 16 H 1.09000 * 110.66206 * 56.90021 * 15 14 4 17 17 C 1.54705 * 110.75299 * 180.31766 * 15 14 4 18 18 C 1.51638 * 101.93094 * 143.59688 * 17 15 14 19 19 C 1.37746 * 132.17374 * 164.13699 * 18 17 15 20 20 C 1.38350 * 119.97929 * 181.17887 * 19 18 17 21 21 C 1.38291 * 119.76509 * 359.47304 * 20 19 18 22 22 C 1.37926 * 120.35092 * 0.38618 * 21 20 19 23 23 C 1.38884 * 107.04240 * 344.66943 * 18 17 15 24 24 O 1.36140 * 111.22860 * 358.84676 * 23 18 17 25 25 H 1.09003 * 109.47154 * 299.99979 * 1 2 3 26 26 H 1.08994 * 109.47281 * 59.99803 * 1 2 3 27 27 H 1.08999 * 109.46883 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47154 * 240.00021 * 2 1 3 29 29 H 1.09001 * 109.47059 * 183.67516 * 3 2 1 30 30 H 1.09000 * 109.46808 * 303.67196 * 3 2 1 31 31 H 1.08996 * 109.47209 * 63.67385 * 3 2 1 32 32 H 1.09002 * 109.47129 * 190.94577 * 5 4 2 33 33 H 1.09004 * 109.47577 * 310.94459 * 5 4 2 34 34 H 0.97009 * 119.99890 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47441 * 81.64986 * 14 4 2 36 36 H 1.09005 * 109.47076 * 321.65446 * 14 4 2 37 37 H 1.09007 * 110.93584 * 25.44288 * 17 15 14 38 38 H 1.08995 * 110.94129 * 261.76084 * 17 15 14 39 39 H 1.08005 * 120.00644 * 0.90629 * 19 18 17 40 40 H 1.08001 * 120.11712 * 179.72631 * 20 19 18 41 41 H 1.07994 * 119.82034 * 180.08633 * 21 20 19 42 42 H 1.07999 * 119.88084 * 179.73446 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.8449 -2.1458 1.0765 6 6 2.8171 -2.6844 0.0587 7 1 3.4965 -2.0141 -0.4466 8 6 2.8383 -4.0328 -0.2282 9 7 2.0106 -4.8491 0.3868 10 14 4.0429 -4.7003 -1.4903 11 1 5.3101 -5.0772 -0.8141 12 1 3.4583 -5.8964 -2.1484 13 1 4.3178 -3.6581 -2.5117 14 6 1.3585 -0.1832 2.4083 15 6 2.2219 -0.4957 3.6321 16 1 3.2196 -0.0721 3.5172 17 6 1.5480 0.0218 4.9250 18 6 1.9165 -1.0576 5.9242 19 6 1.8862 -1.0927 7.3009 20 6 2.3109 -2.2249 7.9731 21 6 2.7544 -3.3222 7.2577 22 6 2.7828 -3.2903 5.8791 23 6 2.3588 -2.1536 5.1948 24 8 2.2932 -1.9140 3.8563 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1280 1.4432 -0.0659 30 1 1.6239 1.9750 -0.8553 31 1 1.7315 1.9370 0.9210 32 1 2.0310 -2.6171 2.0416 33 1 0.8259 -2.3635 0.7564 34 1 2.0258 -5.7979 0.1852 35 1 0.3850 -0.6611 2.5187 36 1 1.2260 0.8954 2.3229 37 1 0.4668 0.0859 4.8019 38 1 1.9626 0.9852 5.2216 39 1 1.5352 -0.2350 7.8555 40 1 2.2922 -2.2532 9.0526 41 1 3.0848 -4.2069 7.7815 42 1 3.1347 -4.1500 5.3282 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090874867.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:24 Heat of formation + Delta-G solvation = -2.639577 kcal Electronic energy + Delta-G solvation = -21803.448489 eV Core-core repulsion = 18748.860260 eV Total energy + Delta-G solvation = -3054.588229 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.80647 -37.92117 -36.81089 -32.77004 -32.60025 -31.23781 -29.75003 -29.40943 -26.86715 -26.61563 -24.63095 -22.39152 -21.83635 -21.36997 -21.33501 -18.73974 -17.18937 -16.46168 -16.07244 -15.66574 -15.48998 -14.55711 -14.45362 -14.02110 -13.94501 -13.44573 -13.00341 -12.96990 -12.86073 -12.65833 -12.29453 -12.10274 -11.85448 -11.60335 -11.55266 -11.31914 -11.12703 -10.80055 -10.74696 -10.63467 -10.53847 -10.40745 -10.18905 -9.97761 -9.63290 -9.02749 -8.70467 -8.29999 -7.80698 -7.18532 -5.91075 -3.90737 1.48403 1.62474 3.37419 3.43219 3.46438 3.66085 3.94800 4.46628 4.59251 4.68553 5.00130 5.17118 5.23734 5.34280 5.43449 5.44596 5.50683 5.54153 5.60784 5.74159 5.80550 5.84275 5.89627 5.96335 6.03157 6.07333 6.18621 6.25422 6.28798 6.41251 6.50810 6.52727 6.65483 6.67713 6.78683 6.88596 6.91129 7.48344 7.53172 7.65677 7.91612 8.29361 8.35882 8.65344 9.16872 9.71368 11.19448 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.006150 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.885535 B = 4551.948876 C = 6090.518649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.078 3.922 3 C -0.140 4.140 4 N -0.527 5.527 5 C 0.183 3.817 6 C -0.501 4.501 7 H 0.060 0.940 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.893 3.107 11 H -0.282 1.282 12 H -0.289 1.289 13 H -0.275 1.275 14 C 0.057 3.943 15 C 0.091 3.909 16 H 0.089 0.911 17 C -0.105 4.105 18 C -0.183 4.183 19 C -0.074 4.074 20 C -0.164 4.164 21 C -0.086 4.086 22 C -0.143 4.143 23 C 0.119 3.881 24 O -0.269 6.269 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.059 0.941 33 H -0.009 1.009 34 H 0.259 0.741 35 H 0.037 0.963 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.669 9.999 10.943 14.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.030 4.030 3 C -0.197 4.197 4 N -0.251 5.251 5 C 0.059 3.941 6 C -0.540 4.540 7 H 0.078 0.922 8 C -0.146 4.146 9 N -0.537 5.537 10 Si 0.721 3.279 11 H -0.208 1.208 12 H -0.215 1.215 13 H -0.200 1.200 14 C -0.072 4.072 15 C 0.034 3.966 16 H 0.107 0.893 17 C -0.142 4.142 18 C -0.184 4.184 19 C -0.092 4.092 20 C -0.182 4.182 21 C -0.104 4.104 22 C -0.161 4.161 23 C 0.073 3.927 24 O -0.182 6.182 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.009 0.991 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.144 0.856 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.213 9.754 10.765 14.578 hybrid contribution -0.319 -0.604 -0.671 0.958 sum -1.532 9.150 10.094 13.710 Atomic orbital electron populations 1.22460 0.98804 1.02100 1.00575 1.21617 0.91630 0.94096 0.95700 1.21858 1.01525 0.96186 1.00155 1.62317 1.54978 1.08462 0.99344 1.20038 0.95157 0.80066 0.98856 1.21156 1.18777 0.92350 1.21687 0.92210 1.24947 0.95977 0.97025 0.96614 1.69976 1.37431 1.03650 1.42626 0.86586 0.81333 0.78378 0.81599 1.20775 1.21476 1.19990 1.22179 0.94973 0.99508 0.90578 1.23472 1.00071 0.78916 0.94094 0.89305 1.21830 1.01897 0.97716 0.92783 1.20842 1.05734 0.97290 0.94572 1.20220 0.98851 0.98122 0.91994 1.20906 1.03994 0.93867 0.99445 1.20823 0.98464 0.98312 0.92848 1.20387 1.04151 0.97905 0.93692 1.19897 0.93322 0.94726 0.84751 1.87282 1.87736 1.25095 1.18086 0.93534 0.93253 0.92120 0.88989 0.92331 0.93374 0.93567 0.92345 0.99121 0.93176 0.94441 0.90171 0.89550 0.89531 0.86393 0.86076 0.85637 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 8.49 37.15 0.32 -2.75 16 2 C 0.08 1.47 2.78 -67.71 -0.19 1.28 16 3 C -0.14 -2.09 9.29 37.16 0.35 -1.75 16 4 N -0.53 -11.12 4.29 -228.07 -0.98 -12.10 16 5 C 0.18 4.81 4.44 -4.97 -0.02 4.79 16 6 C -0.50 -14.26 8.38 -34.44 -0.29 -14.55 16 7 H 0.06 1.69 7.56 -52.49 -0.40 1.30 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 10 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 14 C 0.06 0.99 3.30 -3.82 -0.01 0.98 16 15 C 0.09 1.56 3.85 -25.83 -0.10 1.46 16 16 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 17 C -0.10 -1.43 6.65 -26.52 -0.18 -1.61 16 18 C -0.18 -2.80 6.27 -104.10 -0.65 -3.45 16 19 C -0.07 -0.95 10.03 -39.72 -0.40 -1.35 16 20 C -0.16 -2.00 10.07 -39.52 -0.40 -2.40 16 21 C -0.09 -1.15 10.02 -39.68 -0.40 -1.55 16 22 C -0.14 -2.36 10.06 -39.31 -0.40 -2.76 16 23 C 0.12 2.17 7.04 -38.95 -0.27 1.90 16 24 O -0.27 -5.64 8.03 -20.18 -0.16 -5.81 16 25 H 0.05 0.71 6.61 -51.93 -0.34 0.37 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.19 6.70 -51.93 -0.35 0.84 16 28 H 0.09 1.96 6.99 -51.93 -0.36 1.60 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.63 6.35 -51.93 -0.33 0.30 16 32 H 0.06 1.67 5.13 -51.93 -0.27 1.40 16 33 H -0.01 -0.25 6.52 -51.93 -0.34 -0.59 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.04 0.70 7.43 -51.93 -0.39 0.31 16 36 H 0.08 1.17 5.82 -51.93 -0.30 0.87 16 37 H 0.09 1.11 7.92 -51.93 -0.41 0.70 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 41 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 42 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 330.86 15.07 4.99 4.99 Total: -1.00 -31.52 330.86 -9.61 -41.13 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.43 Total: 1.45 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -2.74 Total: -20.27 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: -0.24 Total: -38.59 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.16 Total: -5.81 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.52 -9.61 -41.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090874867.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.487 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds