Wall clock time and date at job start Mon Mar 30 2020 07:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47281 * 2 1 4 4 N 1.46903 * 109.47566 * 119.99829 * 2 1 3 5 5 C 1.46899 * 110.99718 * 74.27859 * 4 2 1 6 6 C 1.50705 * 109.47239 * 70.94832 * 5 4 2 7 7 H 1.07997 * 119.99750 * 359.97438 * 6 5 4 8 8 C 1.37874 * 119.99975 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00156 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99701 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47053 * 89.99857 * 10 8 6 12 12 H 1.48510 * 109.47017 * 209.99708 * 10 8 6 13 13 H 1.48498 * 109.47006 * 329.99649 * 10 8 6 14 14 C 1.46897 * 111.00087 * 310.33069 * 4 2 1 15 15 C 1.53002 * 109.47444 * 201.65440 * 14 4 2 16 16 H 1.09000 * 110.66206 * 56.90021 * 15 14 4 17 17 C 1.54705 * 110.75299 * 180.31766 * 15 14 4 18 18 C 1.51638 * 101.93094 * 143.59688 * 17 15 14 19 19 C 1.37746 * 132.17374 * 164.13699 * 18 17 15 20 20 C 1.38350 * 119.97929 * 181.17887 * 19 18 17 21 21 C 1.38291 * 119.76509 * 359.47304 * 20 19 18 22 22 C 1.37926 * 120.35092 * 0.38618 * 21 20 19 23 23 C 1.38884 * 107.04240 * 344.66943 * 18 17 15 24 24 O 1.36140 * 111.22860 * 358.84676 * 23 18 17 25 25 H 1.09003 * 109.47154 * 299.99979 * 1 2 3 26 26 H 1.08994 * 109.47281 * 59.99803 * 1 2 3 27 27 H 1.08999 * 109.46883 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47154 * 240.00021 * 2 1 3 29 29 H 1.09001 * 109.47059 * 183.67516 * 3 2 1 30 30 H 1.09000 * 109.46808 * 303.67196 * 3 2 1 31 31 H 1.08996 * 109.47209 * 63.67385 * 3 2 1 32 32 H 1.09002 * 109.47129 * 190.94577 * 5 4 2 33 33 H 1.09004 * 109.47577 * 310.94459 * 5 4 2 34 34 H 0.97009 * 119.99890 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47441 * 81.64986 * 14 4 2 36 36 H 1.09005 * 109.47076 * 321.65446 * 14 4 2 37 37 H 1.09007 * 110.93584 * 25.44288 * 17 15 14 38 38 H 1.08995 * 110.94129 * 261.76084 * 17 15 14 39 39 H 1.08005 * 120.00644 * 0.90629 * 19 18 17 40 40 H 1.08001 * 120.11712 * 179.72631 * 20 19 18 41 41 H 1.07994 * 119.82034 * 180.08633 * 21 20 19 42 42 H 1.07999 * 119.88084 * 179.73446 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.8449 -2.1458 1.0765 6 6 2.8171 -2.6844 0.0587 7 1 3.4965 -2.0141 -0.4466 8 6 2.8383 -4.0328 -0.2282 9 7 2.0106 -4.8491 0.3868 10 14 4.0429 -4.7003 -1.4903 11 1 5.3101 -5.0772 -0.8141 12 1 3.4583 -5.8964 -2.1484 13 1 4.3178 -3.6581 -2.5117 14 6 1.3585 -0.1832 2.4083 15 6 2.2219 -0.4957 3.6321 16 1 3.2196 -0.0721 3.5172 17 6 1.5480 0.0218 4.9250 18 6 1.9165 -1.0576 5.9242 19 6 1.8862 -1.0927 7.3009 20 6 2.3109 -2.2249 7.9731 21 6 2.7544 -3.3222 7.2577 22 6 2.7828 -3.2903 5.8791 23 6 2.3588 -2.1536 5.1948 24 8 2.2932 -1.9140 3.8563 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1280 1.4432 -0.0659 30 1 1.6239 1.9750 -0.8553 31 1 1.7315 1.9370 0.9210 32 1 2.0310 -2.6171 2.0416 33 1 0.8259 -2.3635 0.7564 34 1 2.0258 -5.7979 0.1852 35 1 0.3850 -0.6611 2.5187 36 1 1.2260 0.8954 2.3229 37 1 0.4668 0.0859 4.8019 38 1 1.9626 0.9852 5.2216 39 1 1.5352 -0.2350 7.8555 40 1 2.2922 -2.2532 9.0526 41 1 3.0848 -4.2069 7.7815 42 1 3.1347 -4.1500 5.3282 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090874867.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:23 Heat of formation + Delta-G solvation = -22.178613 kcal Electronic energy + Delta-G solvation = -21804.295765 eV Core-core repulsion = 18748.860260 eV Total energy + Delta-G solvation = -3055.435505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.05056 -39.39903 -38.08734 -34.88836 -33.87885 -32.67332 -31.00213 -30.85037 -28.56410 -27.98450 -26.19397 -24.10139 -23.26184 -22.66262 -22.48010 -20.29353 -18.59216 -18.12407 -17.67439 -17.11380 -16.80918 -16.39228 -15.82797 -15.61997 -15.15693 -14.78852 -14.63357 -14.29434 -14.00490 -13.99081 -13.86009 -13.50960 -13.25983 -13.11113 -12.89345 -12.71268 -12.65970 -12.44453 -12.39392 -12.17895 -12.09956 -11.78127 -11.68159 -11.59489 -11.32226 -11.06125 -10.53192 -9.80055 -9.01512 -8.91910 -8.15415 -6.23753 0.38901 0.48459 1.36646 1.39121 1.49517 2.40041 2.45165 2.82129 3.15633 3.19938 3.52577 3.80111 4.01976 4.09286 4.11610 4.19201 4.23739 4.36662 4.40907 4.52120 4.54929 4.60427 4.67797 4.72526 4.82368 4.82959 4.91851 4.98814 5.02976 5.10369 5.18765 5.30202 5.35796 5.44157 5.51513 5.56916 5.57962 5.63772 5.73517 5.86310 6.16672 6.38918 6.52733 6.73713 6.94206 7.43762 8.95150 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014672 B = 0.006150 C = 0.004596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.885535 B = 4551.948876 C = 6090.518649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 C -0.127 4.127 4 N -0.535 5.535 5 C 0.202 3.798 6 C -0.515 4.515 7 H 0.056 0.944 8 C -0.002 4.002 9 N -0.935 5.935 10 Si 0.964 3.036 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.263 1.263 14 C 0.061 3.939 15 C 0.082 3.918 16 H 0.083 0.917 17 C -0.090 4.090 18 C -0.187 4.187 19 C -0.070 4.070 20 C -0.151 4.151 21 C -0.086 4.086 22 C -0.173 4.173 23 C 0.070 3.930 24 O -0.319 6.319 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.021 0.979 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.032 0.968 33 H -0.044 1.044 34 H 0.260 0.740 35 H 0.022 0.978 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.157 0.843 40 H 0.162 0.838 41 H 0.153 0.847 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 12.638 12.668 17.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.038 4.038 3 C -0.185 4.185 4 N -0.258 5.258 5 C 0.076 3.924 6 C -0.553 4.553 7 H 0.075 0.925 8 C -0.199 4.199 9 N -0.576 5.576 10 Si 0.789 3.211 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.187 1.187 14 C -0.067 4.067 15 C 0.026 3.974 16 H 0.101 0.899 17 C -0.127 4.127 18 C -0.188 4.188 19 C -0.088 4.088 20 C -0.169 4.169 21 C -0.103 4.103 22 C -0.192 4.192 23 C 0.025 3.975 24 O -0.234 6.234 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.049 0.951 33 H -0.026 1.026 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.137 0.863 37 H 0.114 0.886 38 H 0.140 0.860 39 H 0.174 0.826 40 H 0.180 0.820 41 H 0.170 0.830 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.110 12.422 12.495 17.654 hybrid contribution -0.366 -1.425 -1.108 1.842 sum -1.475 10.996 11.387 15.899 Atomic orbital electron populations 1.22354 0.97460 1.00274 1.02891 1.21712 0.92825 0.95947 0.93286 1.21751 1.01065 0.93218 1.02435 1.62217 1.56252 1.05584 1.01766 1.19586 0.92545 0.83618 0.96664 1.21489 1.18977 0.92783 1.22092 0.92529 1.25877 0.97862 0.97367 0.98769 1.70126 1.39268 1.03926 1.44306 0.85468 0.78746 0.77882 0.79022 1.20217 1.20768 1.18727 1.22292 0.93956 1.01255 0.89233 1.23609 1.00124 0.77960 0.95706 0.89913 1.21799 1.02248 0.98545 0.90123 1.21131 1.05389 0.96482 0.95765 1.20711 0.97542 0.99576 0.90991 1.21432 1.01415 0.92648 1.01395 1.21168 0.97790 1.00082 0.91300 1.20567 1.05866 0.97314 0.95444 1.20304 0.96249 0.96765 0.84225 1.87192 1.88725 1.27238 1.20266 0.91350 0.90677 0.95994 0.92582 0.93042 0.90845 0.91385 0.95069 1.02644 0.93103 0.96010 0.86255 0.88552 0.85971 0.82575 0.82005 0.82951 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.80 8.49 71.98 0.61 -5.19 16 2 C 0.07 2.68 2.78 44.91 0.12 2.80 16 3 C -0.13 -3.52 9.29 71.98 0.67 -2.85 16 4 N -0.53 -23.39 4.29 -875.49 -3.76 -27.15 16 5 C 0.20 11.37 4.44 85.56 0.38 11.75 16 6 C -0.51 -30.91 8.38 25.60 0.21 -30.70 16 7 H 0.06 3.34 7.56 -2.91 -0.02 3.32 16 8 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 9 N -0.94 -59.82 13.29 21.45 0.28 -59.53 16 10 Si 0.96 46.87 29.54 68.60 2.03 48.89 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 13 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 14 C 0.06 2.14 3.30 86.30 0.28 2.42 16 15 C 0.08 2.86 3.85 31.18 0.12 2.98 16 16 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 17 C -0.09 -2.29 6.65 30.73 0.20 -2.09 16 18 C -0.19 -5.48 6.27 -19.53 -0.12 -5.60 16 19 C -0.07 -1.57 10.03 22.18 0.22 -1.35 16 20 C -0.15 -3.16 10.07 22.31 0.22 -2.93 16 21 C -0.09 -2.19 10.02 22.21 0.22 -1.96 16 22 C -0.17 -6.09 10.06 22.45 0.23 -5.86 16 23 C 0.07 2.67 7.04 22.68 0.16 2.83 16 24 O -0.32 -14.44 8.03 -95.14 -0.76 -15.21 16 25 H 0.07 1.99 6.61 -2.39 -0.02 1.97 16 26 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.02 0.88 6.70 -2.39 -0.02 0.87 16 28 H 0.06 2.49 6.99 -2.39 -0.02 2.48 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.07 1.59 6.35 -2.39 -0.02 1.57 16 32 H 0.03 1.95 5.13 -2.39 -0.01 1.94 16 33 H -0.04 -2.72 6.52 -2.38 -0.02 -2.74 16 34 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 35 H 0.02 0.83 7.43 -2.39 -0.02 0.82 16 36 H 0.12 3.18 5.82 -2.38 -0.01 3.16 16 37 H 0.10 2.26 7.92 -2.38 -0.02 2.24 16 38 H 0.12 2.21 8.14 -2.39 -0.02 2.20 16 39 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 40 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 41 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 42 H 0.11 4.01 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -75.59 330.86 2.79 -72.81 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.00 Total: 15.58 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 4.00 Total: -35.39 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -3.47 Total: -86.68 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.76 Total: -15.21 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.89 kcal Total: -75.59 2.79 -72.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090874867.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.630 kcal (2) G-P(sol) polarization free energy of solvation -75.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds