Wall clock time and date at job start Mon Mar 30 2020 07:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46817 * 2 1 4 4 N 1.46904 * 109.46971 * 179.97438 * 3 2 1 5 5 C 1.46901 * 111.00209 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47289 * 180.02562 * 5 4 3 7 7 C 1.50701 * 119.99981 * 275.00039 * 6 5 4 8 8 C 1.32664 * 119.99824 * 94.99876 * 6 5 4 9 9 C 1.47684 * 119.99980 * 173.26148 * 8 6 5 10 10 C 1.39501 * 120.17875 * 324.97970 * 9 8 6 11 11 C 1.37952 * 119.92317 * 180.02562 * 10 9 8 12 12 C 1.38486 * 120.29570 * 0.02731 * 11 10 9 13 13 C 1.38124 * 120.36680 * 359.69439 * 12 11 10 14 14 C 1.38740 * 120.06491 * 0.55799 * 13 12 11 15 15 O 1.35639 * 120.14054 * 179.74410 * 14 13 12 16 16 C 1.34811 * 117.00835 * 5.57898 * 15 14 13 17 17 H 1.08009 * 119.99121 * 354.92715 * 16 15 14 18 18 C 1.38647 * 120.00495 * 174.65082 * 16 15 14 19 19 N 1.31553 * 119.99939 * 180.28031 * 18 16 15 20 20 Si 1.86796 * 119.99805 * 0.27572 * 18 16 15 21 21 H 1.48502 * 109.47075 * 90.00192 * 20 18 16 22 22 H 1.48497 * 109.47283 * 209.99905 * 20 18 16 23 23 H 1.48496 * 109.47478 * 330.00224 * 20 18 16 24 24 H 1.08997 * 109.47082 * 300.00026 * 1 2 3 25 25 H 1.08998 * 109.46714 * 60.00435 * 1 2 3 26 26 H 1.09003 * 109.46711 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47589 * 239.99966 * 2 1 3 28 28 H 1.09002 * 109.47200 * 119.99533 * 2 1 3 29 29 H 1.08997 * 109.47316 * 60.00117 * 3 2 1 30 30 H 1.08998 * 109.47124 * 299.99315 * 3 2 1 31 31 H 1.00899 * 110.99886 * 56.04621 * 4 3 2 32 32 H 1.09003 * 109.46832 * 59.99719 * 5 4 3 33 33 H 1.09003 * 109.46740 * 300.00408 * 5 4 3 34 34 H 1.08995 * 109.46802 * 273.42224 * 7 6 5 35 35 H 1.08998 * 109.46952 * 33.42475 * 7 6 5 36 36 H 1.09005 * 109.46862 * 153.41803 * 7 6 5 37 37 H 1.07999 * 120.00290 * 353.26955 * 8 6 5 38 38 H 1.08001 * 120.04052 * 0.04958 * 10 9 8 39 39 H 1.07997 * 119.85608 * 180.02562 * 11 10 9 40 40 H 1.07996 * 119.81526 * 179.97438 * 12 11 10 41 41 H 1.07994 * 119.96394 * 180.30211 * 13 12 11 42 42 H 0.96996 * 120.00291 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0354 2.8140 0.0000 6 6 5.5419 2.7738 0.0000 7 6 6.2921 2.6406 1.3003 8 6 6.2076 2.8557 -1.1445 9 6 7.6803 2.9664 -1.1359 10 6 8.3239 3.6811 -0.1255 11 6 9.6998 3.7816 -0.1229 12 6 10.4463 3.1762 -1.1199 13 6 9.8219 2.4608 -2.1230 14 6 8.4388 2.3544 -2.1432 15 8 7.8237 1.6566 -3.1304 16 6 8.6160 0.9935 -3.9964 17 1 9.6892 1.0990 -3.9359 18 6 8.0535 0.1715 -4.9609 19 7 8.8269 -0.4799 -5.8024 20 14 6.1974 -0.0110 -5.0654 21 1 5.6493 1.0214 -5.9814 22 1 5.8611 -1.3613 -5.5838 23 1 5.6061 0.1619 -3.7143 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.8709 0.9164 -0.7805 32 1 3.6855 3.3379 0.8896 33 1 3.6862 3.3368 -0.8904 34 1 6.4470 3.6288 1.7332 35 1 5.7144 2.0274 1.9918 36 1 7.2575 2.1691 1.1160 37 1 5.6727 2.8416 -2.0826 38 1 7.7458 4.1550 0.6540 39 1 10.1970 4.3348 0.6601 40 1 11.5230 3.2601 -1.1106 41 1 10.4108 1.9872 -2.8945 42 1 8.4334 -1.0546 -6.4774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092731358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:34 Heat of formation + Delta-G solvation = 1.376670 kcal Electronic energy + Delta-G solvation = -20831.906670 eV Core-core repulsion = 17777.492598 eV Total energy + Delta-G solvation = -3054.414072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.38161 -37.50574 -36.61664 -34.99172 -32.52673 -32.38693 -29.76851 -29.34157 -27.09164 -26.11593 -25.21668 -23.57781 -21.65957 -21.43470 -20.95061 -18.16379 -17.90155 -16.89351 -16.12564 -15.25002 -15.04720 -14.82029 -14.76010 -14.15708 -14.07863 -13.88810 -13.68193 -13.26266 -13.08162 -12.63279 -12.38901 -12.33876 -12.16850 -11.95531 -11.75541 -11.43437 -11.29986 -11.26299 -11.04325 -10.83351 -10.80064 -10.63960 -10.49095 -10.14595 -9.43035 -9.11963 -8.89281 -8.39287 -7.84096 -7.17799 -6.46340 -4.11942 1.65757 2.26681 2.87466 3.18590 3.20828 3.34902 4.18858 4.30094 4.53532 4.78216 4.83281 4.94142 5.07316 5.13468 5.18108 5.27359 5.42509 5.52731 5.56264 5.57890 5.63785 5.70695 5.72791 5.85152 5.87062 6.00275 6.02350 6.05686 6.14449 6.18429 6.20200 6.42008 6.55028 6.73992 6.87309 7.00045 7.06304 7.21875 7.26452 7.34479 7.45229 7.59789 7.76409 7.99760 8.88802 9.51369 10.61205 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011451 B = 0.006129 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.636099 B = 4567.503033 C = 6807.011728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.057 3.943 4 N -0.689 5.689 5 C 0.104 3.896 6 C -0.153 4.153 7 C -0.107 4.107 8 C -0.069 4.069 9 C -0.138 4.138 10 C -0.066 4.066 11 C -0.211 4.211 12 C -0.071 4.071 13 C -0.224 4.224 14 C 0.172 3.828 15 O -0.209 6.209 16 C -0.390 4.390 17 H 0.107 0.893 18 C 0.065 3.935 19 N -0.877 5.877 20 Si 0.902 3.098 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.257 1.257 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.026 0.974 31 H 0.346 0.654 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.123 0.877 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.133 0.867 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.951 5.125 11.595 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.072 4.072 4 N -0.320 5.320 5 C -0.024 4.024 6 C -0.154 4.154 7 C -0.163 4.163 8 C -0.088 4.088 9 C -0.139 4.139 10 C -0.084 4.084 11 C -0.229 4.229 12 C -0.090 4.090 13 C -0.243 4.243 14 C 0.119 3.881 15 O -0.113 6.113 16 C -0.465 4.465 17 H 0.124 0.876 18 C -0.138 4.138 19 N -0.515 5.515 20 Si 0.728 3.272 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.181 1.181 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.164 0.836 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.127 0.873 38 H 0.140 0.860 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.151 0.849 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.144 4.851 12.021 16.460 hybrid contribution -0.679 0.043 -1.321 1.486 sum -10.823 4.894 10.700 15.987 Atomic orbital electron populations 1.21725 0.95721 1.01680 1.01644 1.21519 0.95387 0.96578 1.02798 1.22004 0.88134 0.96884 1.00178 1.60553 1.06622 1.14125 1.50727 1.20821 0.91858 0.89470 1.00233 1.21625 0.93758 1.04688 0.95299 1.20933 1.00214 1.00537 0.94616 1.21361 0.92367 0.98064 0.96987 1.18072 0.92326 1.06637 0.96874 1.21070 0.94184 0.96842 0.96329 1.20610 0.93878 1.07035 1.01417 1.20879 0.98782 0.95554 0.93758 1.21240 0.94392 1.06234 1.02455 1.19194 0.90798 0.91000 0.87149 1.83518 1.36290 1.56444 1.35054 1.20789 0.91895 1.24367 1.09466 0.87579 1.24449 1.00105 0.94524 0.94737 1.69638 1.35928 1.27910 1.17992 0.86219 0.83831 0.77537 0.79628 1.19964 1.20762 1.18111 0.92747 0.92911 0.92598 0.92032 0.91083 0.91282 0.95582 0.83595 0.90832 0.95060 0.92503 0.92368 0.91047 0.87301 0.85968 0.87384 0.87265 0.84899 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.91 16 2 C -0.12 -1.29 6.19 -26.73 -0.17 -1.45 16 3 C 0.06 0.64 5.69 -3.82 -0.02 0.62 16 4 N -0.69 -9.33 6.49 -115.05 -0.75 -10.08 16 5 C 0.10 1.41 5.85 -4.98 -0.03 1.38 16 6 C -0.15 -2.37 5.52 -101.24 -0.56 -2.92 16 7 C -0.11 -1.50 8.21 36.01 0.30 -1.20 16 8 C -0.07 -1.25 8.94 -37.62 -0.34 -1.59 16 9 C -0.14 -2.74 5.19 -104.85 -0.54 -3.28 16 10 C -0.07 -1.13 7.59 -39.22 -0.30 -1.43 16 11 C -0.21 -3.50 10.03 -39.59 -0.40 -3.90 16 12 C -0.07 -1.29 10.03 -39.53 -0.40 -1.69 16 13 C -0.22 -4.83 9.16 -39.44 -0.36 -5.19 16 14 C 0.17 3.95 6.66 -38.68 -0.26 3.69 16 15 O -0.21 -5.41 8.03 0.45 0.00 -5.41 16 16 C -0.39 -10.85 9.95 30.88 0.31 -10.55 16 17 H 0.11 3.02 5.44 -52.48 -0.29 2.74 16 18 C 0.07 1.82 5.49 -17.52 -0.10 1.72 16 19 N -0.88 -25.13 13.96 55.48 0.77 -24.35 16 20 Si 0.90 21.40 28.62 -169.99 -4.86 16.54 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.26 -6.05 7.11 56.52 0.40 -5.64 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.35 5.12 8.72 -39.29 -0.34 4.77 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.03 0.42 8.03 -51.93 -0.42 0.00 16 34 H 0.06 0.69 6.91 -51.93 -0.36 0.33 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.12 5.98 -51.93 -0.31 0.81 16 37 H 0.11 2.08 8.04 -52.49 -0.42 1.66 16 38 H 0.12 1.77 5.43 -52.49 -0.28 1.49 16 39 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.13 2.99 5.64 -52.49 -0.30 2.70 16 42 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 344.70 15.07 5.19 5.19 Total: -1.00 -28.41 344.70 -8.63 -37.04 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -6.50 Total: 7.77 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: -2.49 Total: -26.69 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.03 Total: -34.43 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: 0.00 Total: -5.41 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.86 Total: 16.54 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.41 -8.63 -37.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092731358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.413 kcal (2) G-P(sol) polarization free energy of solvation -28.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds