Wall clock time and date at job start Mon Mar 30 2020 07:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46817 * 2 1 4 4 N 1.46904 * 109.46971 * 179.97438 * 3 2 1 5 5 C 1.46901 * 111.00209 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47289 * 180.02562 * 5 4 3 7 7 C 1.50701 * 119.99981 * 275.00039 * 6 5 4 8 8 C 1.32664 * 119.99824 * 94.99876 * 6 5 4 9 9 C 1.47684 * 119.99980 * 173.26148 * 8 6 5 10 10 C 1.39501 * 120.17875 * 324.97970 * 9 8 6 11 11 C 1.37952 * 119.92317 * 180.02562 * 10 9 8 12 12 C 1.38486 * 120.29570 * 0.02731 * 11 10 9 13 13 C 1.38124 * 120.36680 * 359.69439 * 12 11 10 14 14 C 1.38740 * 120.06491 * 0.55799 * 13 12 11 15 15 O 1.35639 * 120.14054 * 179.74410 * 14 13 12 16 16 C 1.34811 * 117.00835 * 5.57898 * 15 14 13 17 17 H 1.08009 * 119.99121 * 354.92715 * 16 15 14 18 18 C 1.38647 * 120.00495 * 174.65082 * 16 15 14 19 19 N 1.31553 * 119.99939 * 180.28031 * 18 16 15 20 20 Si 1.86796 * 119.99805 * 0.27572 * 18 16 15 21 21 H 1.48502 * 109.47075 * 90.00192 * 20 18 16 22 22 H 1.48497 * 109.47283 * 209.99905 * 20 18 16 23 23 H 1.48496 * 109.47478 * 330.00224 * 20 18 16 24 24 H 1.08997 * 109.47082 * 300.00026 * 1 2 3 25 25 H 1.08998 * 109.46714 * 60.00435 * 1 2 3 26 26 H 1.09003 * 109.46711 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47589 * 239.99966 * 2 1 3 28 28 H 1.09002 * 109.47200 * 119.99533 * 2 1 3 29 29 H 1.08997 * 109.47316 * 60.00117 * 3 2 1 30 30 H 1.08998 * 109.47124 * 299.99315 * 3 2 1 31 31 H 1.00899 * 110.99886 * 56.04621 * 4 3 2 32 32 H 1.09003 * 109.46832 * 59.99719 * 5 4 3 33 33 H 1.09003 * 109.46740 * 300.00408 * 5 4 3 34 34 H 1.08995 * 109.46802 * 273.42224 * 7 6 5 35 35 H 1.08998 * 109.46952 * 33.42475 * 7 6 5 36 36 H 1.09005 * 109.46862 * 153.41803 * 7 6 5 37 37 H 1.07999 * 120.00290 * 353.26955 * 8 6 5 38 38 H 1.08001 * 120.04052 * 0.04958 * 10 9 8 39 39 H 1.07997 * 119.85608 * 180.02562 * 11 10 9 40 40 H 1.07996 * 119.81526 * 179.97438 * 12 11 10 41 41 H 1.07994 * 119.96394 * 180.30211 * 13 12 11 42 42 H 0.96996 * 120.00291 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0354 2.8140 0.0000 6 6 5.5419 2.7738 0.0000 7 6 6.2921 2.6406 1.3003 8 6 6.2076 2.8557 -1.1445 9 6 7.6803 2.9664 -1.1359 10 6 8.3239 3.6811 -0.1255 11 6 9.6998 3.7816 -0.1229 12 6 10.4463 3.1762 -1.1199 13 6 9.8219 2.4608 -2.1230 14 6 8.4388 2.3544 -2.1432 15 8 7.8237 1.6566 -3.1304 16 6 8.6160 0.9935 -3.9964 17 1 9.6892 1.0990 -3.9359 18 6 8.0535 0.1715 -4.9609 19 7 8.8269 -0.4799 -5.8024 20 14 6.1974 -0.0110 -5.0654 21 1 5.6493 1.0214 -5.9814 22 1 5.8611 -1.3613 -5.5838 23 1 5.6061 0.1619 -3.7143 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.8709 0.9164 -0.7805 32 1 3.6855 3.3379 0.8896 33 1 3.6862 3.3368 -0.8904 34 1 6.4470 3.6288 1.7332 35 1 5.7144 2.0274 1.9918 36 1 7.2575 2.1691 1.1160 37 1 5.6727 2.8416 -2.0826 38 1 7.7458 4.1550 0.6540 39 1 10.1970 4.3348 0.6601 40 1 11.5230 3.2601 -1.1106 41 1 10.4108 1.9872 -2.8945 42 1 8.4334 -1.0546 -6.4774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092731358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:33 Heat of formation + Delta-G solvation = -14.908197 kcal Electronic energy + Delta-G solvation = -20832.612835 eV Core-core repulsion = 17777.492598 eV Total energy + Delta-G solvation = -3055.120237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.00736 -38.86104 -37.99179 -36.15748 -34.48857 -33.48408 -31.12215 -30.90108 -28.25210 -27.49315 -26.93260 -24.60821 -23.19737 -22.57405 -22.20976 -19.83153 -19.57654 -18.51028 -17.17373 -16.76172 -16.44581 -16.07546 -15.91698 -15.79114 -15.53758 -15.37616 -15.02164 -14.60024 -14.26482 -14.14032 -14.10794 -13.57466 -13.28260 -13.07498 -12.96963 -12.84360 -12.57259 -12.49314 -12.44080 -12.18770 -12.09915 -11.93417 -11.71137 -11.63282 -11.20381 -10.94314 -10.48550 -9.46486 -9.33799 -8.73500 -8.52819 -6.23478 0.21317 0.70065 1.26140 1.30854 1.46565 1.48373 2.23999 2.77354 3.04042 3.18688 3.33340 3.83376 3.96442 4.08664 4.13767 4.17414 4.23971 4.30784 4.45307 4.53160 4.60498 4.64796 4.70342 4.75635 4.77635 4.87152 4.89940 4.92043 5.02880 5.17344 5.20608 5.26772 5.28200 5.37568 5.40316 5.54435 5.70145 5.73462 5.80020 5.89386 5.98788 6.08571 6.26860 6.29866 6.82046 7.58433 8.58949 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011451 B = 0.006129 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.636099 B = 4567.503033 C = 6807.011728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.058 3.942 4 N -0.697 5.697 5 C 0.102 3.898 6 C -0.116 4.116 7 C -0.109 4.109 8 C -0.113 4.113 9 C -0.131 4.131 10 C -0.065 4.065 11 C -0.184 4.184 12 C -0.077 4.077 13 C -0.245 4.245 14 C 0.126 3.874 15 O -0.236 6.236 16 C -0.398 4.398 17 H 0.080 0.920 18 C 0.013 3.987 19 N -0.922 5.922 20 Si 0.965 3.035 21 H -0.268 1.268 22 H -0.268 1.268 23 H -0.260 1.260 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.026 0.974 31 H 0.335 0.665 32 H 0.098 0.902 33 H 0.030 0.970 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.139 0.861 41 H 0.106 0.894 42 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.690 6.922 15.159 20.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.070 4.070 4 N -0.327 5.327 5 C -0.026 4.026 6 C -0.116 4.116 7 C -0.165 4.165 8 C -0.132 4.132 9 C -0.132 4.132 10 C -0.082 4.082 11 C -0.202 4.202 12 C -0.095 4.095 13 C -0.264 4.264 14 C 0.076 3.924 15 O -0.143 6.143 16 C -0.474 4.474 17 H 0.098 0.902 18 C -0.186 4.186 19 N -0.563 5.563 20 Si 0.787 3.213 21 H -0.193 1.193 22 H -0.193 1.193 23 H -0.184 1.184 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.045 0.955 31 H 0.152 0.848 32 H 0.116 0.884 33 H 0.048 0.952 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.177 0.823 39 H 0.172 0.828 40 H 0.157 0.843 41 H 0.124 0.876 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.877 6.681 15.627 20.734 hybrid contribution -0.088 -0.319 -2.084 2.110 sum -11.965 6.362 13.543 19.159 Atomic orbital electron populations 1.21698 0.94164 1.02309 1.02219 1.21506 0.96721 0.95878 1.02041 1.22075 0.86587 0.97571 1.00797 1.60602 1.08167 1.13764 1.50157 1.20910 0.90407 0.89863 1.01393 1.22001 0.95013 0.99616 0.95002 1.21008 0.99270 1.02418 0.93790 1.21225 0.91759 1.02803 0.97426 1.18470 0.93230 1.05303 0.96206 1.21521 0.94863 0.95739 0.96097 1.21188 0.93742 1.04461 1.00829 1.21227 1.00558 0.94721 0.92953 1.21284 0.94113 1.07616 1.03415 1.19791 0.91968 0.92367 0.88238 1.83472 1.35981 1.58452 1.36416 1.20721 0.91246 1.25023 1.10433 0.90233 1.25216 1.04512 0.94365 0.94469 1.69722 1.37679 1.29596 1.19318 0.85290 0.78477 0.78103 0.79383 1.19296 1.19276 1.18386 0.91720 0.92766 0.92007 0.93203 0.91458 0.89908 0.95539 0.84829 0.88383 0.95183 0.89264 0.91167 0.92603 0.89254 0.82347 0.82751 0.84324 0.87568 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 71.98 0.71 -1.46 16 2 C -0.12 -2.35 6.19 30.60 0.19 -2.16 16 3 C 0.06 1.18 5.69 86.30 0.49 1.67 16 4 N -0.70 -17.52 6.49 -517.92 -3.36 -20.88 16 5 C 0.10 2.48 5.85 85.56 0.50 2.98 16 6 C -0.12 -3.29 5.52 -17.62 -0.10 -3.39 16 7 C -0.11 -2.59 8.21 71.24 0.58 -2.01 16 8 C -0.11 -4.07 8.94 23.60 0.21 -3.86 16 9 C -0.13 -5.13 5.19 -20.01 -0.10 -5.24 16 10 C -0.06 -1.98 7.59 22.51 0.17 -1.81 16 11 C -0.18 -5.34 10.03 22.26 0.22 -5.11 16 12 C -0.08 -2.64 10.03 22.30 0.22 -2.42 16 13 C -0.25 -11.01 9.16 22.36 0.20 -10.80 16 14 C 0.13 6.03 6.66 22.86 0.15 6.18 16 15 O -0.24 -13.02 8.03 -21.31 -0.17 -13.19 16 16 C -0.40 -23.82 9.95 67.92 0.68 -23.15 16 17 H 0.08 5.00 5.44 -2.91 -0.02 4.99 16 18 C 0.01 0.75 5.49 84.83 0.47 1.22 16 19 N -0.92 -55.79 13.96 21.61 0.30 -55.49 16 20 Si 0.97 46.12 28.62 68.60 1.96 48.08 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.33 9.68 8.72 -89.69 -0.78 8.90 16 32 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.03 0.75 8.03 -2.39 -0.02 0.73 16 34 H 0.09 1.62 6.91 -2.39 -0.02 1.60 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.55 5.98 -2.38 -0.01 1.54 16 37 H 0.09 3.54 8.04 -2.91 -0.02 3.52 16 38 H 0.16 3.69 5.43 -2.91 -0.02 3.67 16 39 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 40 H 0.14 3.90 8.06 -2.91 -0.02 3.87 16 41 H 0.11 5.25 5.64 -2.91 -0.02 5.23 16 42 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -66.54 344.70 3.56 -62.98 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.22 Total: 27.85 kcal Atomic # 6 Polarization: -53.95 SS G_CDS: 4.61 Total: -49.34 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -3.06 Total: -76.36 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: -0.17 Total: -13.19 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.96 Total: 48.08 kcal Total: -66.54 3.56 -62.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092731358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.068 kcal (2) G-P(sol) polarization free energy of solvation -66.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds