Wall clock time and date at job start Mon Mar 30 2020 07:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46748 * 2 1 4 4 N 1.46501 * 109.46493 * 179.97438 * 3 2 1 5 5 C 1.36942 * 120.00206 * 93.33379 * 4 3 2 6 6 H 1.08002 * 119.99693 * 37.18034 * 5 4 3 7 7 C 1.38811 * 119.99991 * 217.18937 * 5 4 3 8 8 N 1.31618 * 119.99987 * 201.26242 * 7 5 4 9 9 Si 1.86800 * 119.99913 * 21.26845 * 7 5 4 10 10 H 1.48500 * 109.47285 * 265.59901 * 9 7 5 11 11 H 1.48494 * 109.47419 * 25.60374 * 9 7 5 12 12 H 1.48498 * 109.47018 * 145.60046 * 9 7 5 13 13 C 1.46500 * 120.00082 * 273.32485 * 4 3 2 14 14 C 1.52999 * 109.47284 * 270.14120 * 13 4 3 15 15 H 1.09000 * 109.43786 * 301.85238 * 14 13 4 16 16 C 1.53072 * 109.43618 * 61.76551 * 14 13 4 17 17 C 1.53411 * 108.29156 * 168.24987 * 16 14 13 18 18 O 1.42829 * 108.37356 * 295.25589 * 17 16 14 19 19 C 1.35846 * 117.86077 * 49.15330 * 18 17 16 20 20 C 1.39143 * 118.50265 * 162.97808 * 19 18 17 21 21 C 1.37956 * 120.22034 * 179.81413 * 20 19 18 22 22 C 1.38294 * 119.96250 * 359.97438 * 21 20 19 23 23 C 1.38107 * 119.97572 * 0.07868 * 22 21 20 24 24 C 1.38313 * 121.79074 * 342.88255 * 19 18 17 25 25 H 1.08992 * 109.47412 * 300.00423 * 1 2 3 26 26 H 1.09003 * 109.46851 * 60.00192 * 1 2 3 27 27 H 1.09004 * 109.47147 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47326 * 239.99941 * 2 1 3 29 29 H 1.09003 * 109.46851 * 119.99808 * 2 1 3 30 30 H 1.09000 * 109.47255 * 59.99898 * 3 2 1 31 31 H 1.09003 * 109.47288 * 299.99541 * 3 2 1 32 32 H 0.96999 * 119.99909 * 0.02562 * 8 7 5 33 33 H 1.08991 * 109.47152 * 30.14210 * 13 4 3 34 34 H 1.09000 * 109.46805 * 150.14287 * 13 4 3 35 35 H 1.08993 * 109.70151 * 287.95275 * 16 14 13 36 36 H 1.09006 * 109.69725 * 48.55409 * 16 14 13 37 37 H 1.09005 * 109.68174 * 54.97923 * 17 16 14 38 38 H 1.08995 * 109.68419 * 175.53201 * 17 16 14 39 39 H 1.08005 * 119.88969 * 359.79225 * 20 19 18 40 40 H 1.08003 * 120.02252 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.01657 * 180.09965 * 22 21 20 42 42 H 1.08002 * 119.84283 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1902 1.5112 -1.1830 6 1 3.8152 2.1243 -1.9892 7 6 5.3666 0.7928 -1.3467 8 7 6.2347 1.1527 -2.2682 9 14 5.7176 -0.6848 -0.2590 10 1 6.5401 -0.2604 0.9023 11 1 4.4365 -1.2586 0.2251 12 1 6.4555 -1.7100 -1.0399 13 6 4.2369 1.3690 1.2675 14 6 4.4887 2.7834 1.7938 15 1 5.0488 3.3523 1.0516 16 6 3.1487 3.4739 2.0599 17 6 3.4184 4.7584 2.8542 18 8 3.9506 4.3960 4.1291 19 6 4.9802 3.5103 4.1587 20 6 5.7412 3.4154 5.3197 21 6 6.7926 2.5250 5.3898 22 6 7.0922 1.7229 4.3038 23 6 6.3396 1.8152 3.1494 24 6 5.2833 2.7088 3.0730 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 6.0525 1.9202 -2.8328 33 1 3.6487 0.8100 1.9951 34 1 5.1905 0.8658 1.1075 35 1 2.6685 3.7213 1.1132 36 1 2.5032 2.8129 2.6383 37 1 4.1381 5.3773 2.3182 38 1 2.4876 5.3095 2.9881 39 1 5.5083 4.0411 6.1686 40 1 7.3810 2.4536 6.2927 41 1 7.9141 1.0244 4.3583 42 1 6.5757 1.1881 2.3024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162838582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:39 Heat of formation + Delta-G solvation = -5.156051 kcal Electronic energy + Delta-G solvation = -22275.586986 eV Core-core repulsion = 19220.889634 eV Total energy + Delta-G solvation = -3054.697352 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.48678 -37.21571 -36.96711 -34.09747 -32.79079 -30.94568 -30.41505 -29.87553 -27.27772 -25.57883 -23.85564 -23.19387 -22.09329 -21.55250 -19.72354 -19.50945 -17.59655 -17.34563 -16.37621 -15.76842 -15.16263 -14.74365 -14.64124 -14.09768 -14.00997 -13.57191 -13.42459 -13.22751 -13.01909 -12.84044 -12.59705 -12.26320 -12.02745 -11.59500 -11.28767 -11.19382 -11.06734 -10.85792 -10.71040 -10.58737 -10.45845 -10.15855 -10.07870 -9.83163 -9.49990 -9.16041 -8.52694 -8.45450 -7.88354 -7.00163 -6.27264 -3.44112 1.59894 1.69036 3.30401 3.49762 3.52492 3.65442 4.03646 4.52948 4.80992 5.03613 5.06414 5.14979 5.22535 5.32290 5.36561 5.44390 5.58629 5.60608 5.63190 5.67272 5.79268 5.83508 5.91814 5.97003 6.13181 6.18321 6.29298 6.30304 6.35116 6.38341 6.46757 6.49501 6.57158 6.61233 6.76915 6.82919 6.87125 6.93466 7.04280 7.05775 7.69706 8.11093 8.47669 9.02702 9.57651 10.19299 11.06548 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014936 B = 0.007594 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.168048 B = 3686.055124 C = 4651.827322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.147 4.147 3 C 0.145 3.855 4 N -0.602 5.602 5 C -0.348 4.348 6 H 0.060 0.940 7 C -0.004 4.004 8 N -0.914 5.914 9 Si 1.055 2.945 10 H -0.290 1.290 11 H -0.282 1.282 12 H -0.300 1.300 13 C 0.151 3.849 14 C -0.067 4.067 15 H 0.089 0.911 16 C -0.142 4.142 17 C 0.060 3.940 18 O -0.322 6.322 19 C 0.126 3.874 20 C -0.155 4.155 21 C -0.098 4.098 22 C -0.154 4.154 23 C -0.088 4.088 24 C -0.138 4.138 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.039 0.961 31 H 0.047 0.953 32 H 0.265 0.735 33 H 0.040 0.960 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.709 3.183 12.459 13.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C 0.019 3.981 4 N -0.323 5.323 5 C -0.477 4.477 6 H 0.078 0.922 7 C -0.207 4.207 8 N -0.552 5.552 9 Si 0.887 3.113 10 H -0.219 1.219 11 H -0.208 1.208 12 H -0.228 1.228 13 C 0.025 3.975 14 C -0.088 4.088 15 H 0.107 0.893 16 C -0.180 4.180 17 C -0.015 4.015 18 O -0.237 6.237 19 C 0.081 3.919 20 C -0.174 4.174 21 C -0.117 4.117 22 C -0.172 4.172 23 C -0.106 4.106 24 C -0.140 4.140 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.723 2.096 12.857 13.548 hybrid contribution -1.038 1.076 -0.601 1.611 sum -4.761 3.172 12.256 13.525 Atomic orbital electron populations 1.21729 0.97277 1.00527 1.00903 1.22159 0.93783 1.01020 1.01770 1.21072 0.84780 0.93466 0.98802 1.44141 1.00108 1.86248 1.01813 1.20074 1.08330 1.26256 0.93086 0.92202 1.26261 0.93601 1.00771 1.00077 1.70892 1.33590 1.28390 1.22281 0.83906 0.75541 0.77131 0.74692 1.21906 1.20753 1.22795 1.21212 0.96435 0.92237 0.87642 1.20762 0.94000 1.01444 0.92608 0.89297 1.22245 0.98416 0.96229 1.01090 1.23013 0.98683 0.97043 0.82740 1.85915 1.46929 1.58838 1.31982 1.18696 0.88489 0.90375 0.94369 1.20482 0.96878 1.02713 0.97337 1.20816 0.96676 0.95720 0.98444 1.21020 1.01137 1.01251 0.93778 1.21307 0.93807 0.97155 0.98318 1.20101 0.99158 0.98346 0.96397 0.93523 0.93204 0.93726 0.91903 0.93246 0.94313 0.93435 0.92521 0.94121 0.92503 0.89312 0.91243 0.92096 0.88104 0.85858 0.85960 0.86183 0.85082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.15 -2.68 6.26 -26.73 -0.17 -2.85 16 3 C 0.14 2.80 4.89 -4.04 -0.02 2.78 16 4 N -0.60 -13.66 1.91 -173.24 -0.33 -13.99 16 5 C -0.35 -9.37 9.77 -15.06 -0.15 -9.52 16 6 H 0.06 1.75 8.06 -52.49 -0.42 1.33 16 7 C 0.00 -0.11 5.32 -17.43 -0.09 -0.21 16 8 N -0.91 -27.61 13.71 55.49 0.76 -26.85 16 9 Si 1.05 25.81 25.35 -169.99 -4.31 21.50 16 10 H -0.29 -6.57 5.44 56.52 0.31 -6.26 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 13 C 0.15 3.18 3.60 -4.04 -0.01 3.17 16 14 C -0.07 -1.28 2.60 -91.70 -0.24 -1.52 16 15 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 16 C -0.14 -2.29 3.96 -26.48 -0.10 -2.39 16 17 C 0.06 0.85 7.03 37.37 0.26 1.11 16 18 O -0.32 -5.15 10.27 -19.26 -0.20 -5.35 16 19 C 0.13 2.10 6.47 -39.22 -0.25 1.85 16 20 C -0.16 -2.27 9.94 -39.35 -0.39 -2.66 16 21 C -0.10 -1.33 10.04 -39.66 -0.40 -1.73 16 22 C -0.15 -2.30 10.05 -39.61 -0.40 -2.70 16 23 C -0.09 -1.56 9.10 -39.51 -0.36 -1.92 16 24 C -0.14 -2.50 5.43 -104.44 -0.57 -3.07 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.04 0.67 5.79 -51.93 -0.30 0.37 16 31 H 0.05 0.94 8.01 -51.93 -0.42 0.52 16 32 H 0.26 7.95 8.73 -40.82 -0.36 7.60 16 33 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.06 1.30 1.61 -51.93 -0.08 1.22 16 35 H 0.09 1.45 6.97 -51.93 -0.36 1.08 16 36 H 0.07 1.11 7.66 -51.93 -0.40 0.71 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 40 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 41 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.13 2.53 5.25 -52.49 -0.28 2.25 16 LS Contribution 324.70 15.07 4.89 4.89 Total: -1.00 -29.39 324.70 -8.28 -37.67 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.57 Total: 3.52 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -2.52 Total: -21.40 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.43 Total: -40.84 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.20 Total: -5.35 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -4.31 Total: 21.50 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.39 -8.28 -37.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162838582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.516 kcal (2) G-P(sol) polarization free energy of solvation -29.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds