Wall clock time and date at job start Mon Mar 30 2020 07:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46748 * 2 1 4 4 N 1.46501 * 109.46493 * 179.97438 * 3 2 1 5 5 C 1.36942 * 120.00206 * 93.33379 * 4 3 2 6 6 H 1.08002 * 119.99693 * 37.18034 * 5 4 3 7 7 C 1.38811 * 119.99991 * 217.18937 * 5 4 3 8 8 N 1.31618 * 119.99987 * 201.26242 * 7 5 4 9 9 Si 1.86800 * 119.99913 * 21.26845 * 7 5 4 10 10 H 1.48500 * 109.47285 * 265.59901 * 9 7 5 11 11 H 1.48494 * 109.47419 * 25.60374 * 9 7 5 12 12 H 1.48498 * 109.47018 * 145.60046 * 9 7 5 13 13 C 1.46500 * 120.00082 * 273.32485 * 4 3 2 14 14 C 1.52999 * 109.47284 * 270.14120 * 13 4 3 15 15 H 1.09000 * 109.43786 * 301.85238 * 14 13 4 16 16 C 1.53072 * 109.43618 * 61.76551 * 14 13 4 17 17 C 1.53411 * 108.29156 * 168.24987 * 16 14 13 18 18 O 1.42829 * 108.37356 * 295.25589 * 17 16 14 19 19 C 1.35846 * 117.86077 * 49.15330 * 18 17 16 20 20 C 1.39143 * 118.50265 * 162.97808 * 19 18 17 21 21 C 1.37956 * 120.22034 * 179.81413 * 20 19 18 22 22 C 1.38294 * 119.96250 * 359.97438 * 21 20 19 23 23 C 1.38107 * 119.97572 * 0.07868 * 22 21 20 24 24 C 1.38313 * 121.79074 * 342.88255 * 19 18 17 25 25 H 1.08992 * 109.47412 * 300.00423 * 1 2 3 26 26 H 1.09003 * 109.46851 * 60.00192 * 1 2 3 27 27 H 1.09004 * 109.47147 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47326 * 239.99941 * 2 1 3 29 29 H 1.09003 * 109.46851 * 119.99808 * 2 1 3 30 30 H 1.09000 * 109.47255 * 59.99898 * 3 2 1 31 31 H 1.09003 * 109.47288 * 299.99541 * 3 2 1 32 32 H 0.96999 * 119.99909 * 0.02562 * 8 7 5 33 33 H 1.08991 * 109.47152 * 30.14210 * 13 4 3 34 34 H 1.09000 * 109.46805 * 150.14287 * 13 4 3 35 35 H 1.08993 * 109.70151 * 287.95275 * 16 14 13 36 36 H 1.09006 * 109.69725 * 48.55409 * 16 14 13 37 37 H 1.09005 * 109.68174 * 54.97923 * 17 16 14 38 38 H 1.08995 * 109.68419 * 175.53201 * 17 16 14 39 39 H 1.08005 * 119.88969 * 359.79225 * 20 19 18 40 40 H 1.08003 * 120.02252 * 180.02562 * 21 20 19 41 41 H 1.07998 * 120.01657 * 180.09965 * 22 21 20 42 42 H 1.08002 * 119.84283 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1902 1.5112 -1.1830 6 1 3.8152 2.1243 -1.9892 7 6 5.3666 0.7928 -1.3467 8 7 6.2347 1.1527 -2.2682 9 14 5.7176 -0.6848 -0.2590 10 1 6.5401 -0.2604 0.9023 11 1 4.4365 -1.2586 0.2251 12 1 6.4555 -1.7100 -1.0399 13 6 4.2369 1.3690 1.2675 14 6 4.4887 2.7834 1.7938 15 1 5.0488 3.3523 1.0516 16 6 3.1487 3.4739 2.0599 17 6 3.4184 4.7584 2.8542 18 8 3.9506 4.3960 4.1291 19 6 4.9802 3.5103 4.1587 20 6 5.7412 3.4154 5.3197 21 6 6.7926 2.5250 5.3898 22 6 7.0922 1.7229 4.3038 23 6 6.3396 1.8152 3.1494 24 6 5.2833 2.7088 3.0730 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 6.0525 1.9202 -2.8328 33 1 3.6487 0.8100 1.9951 34 1 5.1905 0.8658 1.1075 35 1 2.6685 3.7213 1.1132 36 1 2.5032 2.8129 2.6383 37 1 4.1381 5.3773 2.3182 38 1 2.4876 5.3095 2.9881 39 1 5.5083 4.0411 6.1686 40 1 7.3810 2.4536 6.2927 41 1 7.9141 1.0244 4.3583 42 1 6.5757 1.1881 2.3024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162838582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:38 Heat of formation + Delta-G solvation = -21.173233 kcal Electronic energy + Delta-G solvation = -22276.281543 eV Core-core repulsion = 19220.889634 eV Total energy + Delta-G solvation = -3055.391909 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.74391 -38.63877 -38.39386 -35.51561 -34.65879 -32.71709 -31.61386 -31.10479 -28.75162 -27.30084 -25.24397 -24.53761 -23.64377 -22.93549 -21.42980 -20.81162 -19.38894 -18.82949 -17.61668 -17.07111 -16.85742 -16.26115 -15.97480 -15.64099 -15.46748 -15.07235 -14.87689 -14.64873 -14.53639 -14.21256 -14.03355 -13.76574 -13.35556 -13.08670 -12.68237 -12.61414 -12.44592 -12.37927 -12.15624 -11.97275 -11.92436 -11.81452 -11.58583 -11.46828 -11.15413 -11.09878 -10.56227 -9.75052 -9.12698 -9.01765 -8.44025 -5.61935 0.38460 0.48233 1.33250 1.48822 1.68084 2.37214 2.47992 2.82615 3.05323 3.31943 3.71958 3.79825 3.89143 3.92457 4.17791 4.23733 4.25772 4.32686 4.34472 4.43698 4.51306 4.57526 4.59456 4.65703 4.69781 4.77167 4.87501 4.91043 4.96908 5.06405 5.11476 5.17102 5.21035 5.26165 5.37720 5.39104 5.53114 5.57754 5.66166 5.86502 5.89084 6.32352 6.48318 6.92909 7.58697 8.09944 8.82144 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014936 B = 0.007594 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.168048 B = 3686.055124 C = 4651.827322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.144 4.144 3 C 0.143 3.857 4 N -0.612 5.612 5 C -0.328 4.328 6 H 0.025 0.975 7 C -0.055 4.055 8 N -0.951 5.951 9 Si 1.091 2.909 10 H -0.267 1.267 11 H -0.266 1.266 12 H -0.309 1.309 13 C 0.150 3.850 14 C -0.061 4.061 15 H 0.050 0.950 16 C -0.135 4.135 17 C 0.063 3.937 18 O -0.324 6.324 19 C 0.114 3.886 20 C -0.154 4.154 21 C -0.084 4.084 22 C -0.154 4.154 23 C -0.112 4.112 24 C -0.161 4.161 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.033 0.967 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.250 0.750 33 H 0.055 0.945 34 H 0.039 0.961 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.137 0.863 39 H 0.150 0.850 40 H 0.164 0.836 41 H 0.142 0.858 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.846 3.262 16.267 17.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.018 3.982 4 N -0.334 5.334 5 C -0.458 4.458 6 H 0.043 0.957 7 C -0.251 4.251 8 N -0.592 5.592 9 Si 0.918 3.082 10 H -0.195 1.195 11 H -0.191 1.191 12 H -0.238 1.238 13 C 0.025 3.975 14 C -0.081 4.081 15 H 0.068 0.932 16 C -0.173 4.173 17 C -0.012 4.012 18 O -0.238 6.238 19 C 0.069 3.931 20 C -0.172 4.172 21 C -0.102 4.102 22 C -0.172 4.172 23 C -0.130 4.130 24 C -0.163 4.163 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.155 0.845 39 H 0.168 0.832 40 H 0.182 0.818 41 H 0.160 0.840 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.895 2.190 16.696 17.536 hybrid contribution -0.718 1.142 -1.747 2.207 sum -5.614 3.332 14.949 16.313 Atomic orbital electron populations 1.21650 0.93888 1.01934 1.02085 1.22062 0.96765 0.99273 1.00248 1.21198 0.82569 0.94737 0.99679 1.44199 1.01595 1.86567 1.01048 1.19888 1.08061 1.24129 0.93744 0.95722 1.27280 0.94020 1.02869 1.00935 1.70997 1.35077 1.28968 1.24182 0.83422 0.76413 0.74170 0.74153 1.19463 1.19116 1.23802 1.21208 0.95552 0.93772 0.86974 1.20504 0.95524 0.99547 0.92562 0.93200 1.22162 0.96577 0.97249 1.01290 1.23144 1.00116 0.95983 0.81960 1.85918 1.46770 1.58603 1.32525 1.18923 0.89113 0.90423 0.94663 1.20898 0.96359 1.02788 0.97175 1.21274 0.96007 0.93786 0.99104 1.21316 1.01053 1.01726 0.93124 1.21267 0.95046 0.97799 0.98935 1.20003 0.99911 0.99951 0.96407 0.91562 0.92806 0.92260 0.94789 0.93408 0.91491 0.94405 0.94096 0.92669 0.94281 0.89915 0.90500 0.92531 0.84501 0.83250 0.81843 0.84006 0.87591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.91 71.98 0.71 -2.88 16 2 C -0.14 -5.06 6.26 30.59 0.19 -4.87 16 3 C 0.14 5.46 4.89 86.38 0.42 5.88 16 4 N -0.61 -28.24 1.91 -702.01 -1.34 -29.58 16 5 C -0.33 -18.47 9.77 84.03 0.82 -17.65 16 6 H 0.03 1.55 8.06 -2.91 -0.02 1.53 16 7 C -0.05 -3.20 5.32 84.86 0.45 -2.75 16 8 N -0.95 -60.52 13.71 21.65 0.30 -60.22 16 9 Si 1.09 53.61 25.35 68.60 1.74 55.35 16 10 H -0.27 -12.04 5.44 99.48 0.54 -11.50 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.31 -15.56 7.11 99.48 0.71 -14.86 16 13 C 0.15 6.37 3.60 86.38 0.31 6.68 16 14 C -0.06 -2.33 2.60 -11.49 -0.03 -2.36 16 15 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 16 C -0.14 -4.19 3.96 30.76 0.12 -4.07 16 17 C 0.06 1.63 7.03 72.12 0.51 2.14 16 18 O -0.32 -9.48 10.27 -91.82 -0.94 -10.42 16 19 C 0.11 3.55 6.47 22.51 0.15 3.70 16 20 C -0.15 -3.91 9.94 22.42 0.22 -3.69 16 21 C -0.08 -1.91 10.04 22.22 0.22 -1.69 16 22 C -0.15 -4.23 10.05 22.25 0.22 -4.00 16 23 C -0.11 -3.94 9.10 22.32 0.20 -3.74 16 24 C -0.16 -5.72 5.43 -19.74 -0.11 -5.83 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 2.18 5.79 -2.39 -0.01 2.17 16 31 H 0.04 1.50 8.01 -2.39 -0.02 1.48 16 32 H 0.25 16.04 8.73 -92.71 -0.81 15.23 16 33 H 0.05 2.16 8.07 -2.39 -0.02 2.14 16 34 H 0.04 1.82 1.61 -2.39 0.00 1.81 16 35 H 0.08 2.63 6.97 -2.39 -0.02 2.62 16 36 H 0.08 2.27 7.66 -2.38 -0.02 2.25 16 37 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 40 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 42 H 0.11 4.18 5.25 -2.91 -0.02 4.16 16 Total: -1.00 -67.41 324.70 4.97 -62.44 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.79 Total: 17.56 kcal Atomic # 6 Polarization: -39.56 SS G_CDS: 4.42 Total: -35.13 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -1.04 Total: -89.80 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.94 Total: -10.42 kcal Atomic # 14 Polarization: 53.61 SS G_CDS: 1.74 Total: 55.35 kcal Total: -67.41 4.97 -62.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162838582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.271 kcal (2) G-P(sol) polarization free energy of solvation -67.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds