Wall clock time and date at job start Mon Mar 30 2020 07:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47232 * 2 1 4 4 H 1.09004 * 109.46628 * 305.00385 * 3 2 1 5 5 C 1.52998 * 109.46825 * 64.99879 * 3 2 1 6 6 C 1.52994 * 109.47060 * 185.00401 * 3 2 1 7 7 C 1.50703 * 109.46886 * 174.99960 * 6 3 2 8 8 O 1.21288 * 120.00129 * 353.88218 * 7 6 3 9 9 N 1.34777 * 119.99713 * 174.15122 * 7 6 3 10 10 C 1.46509 * 119.99810 * 184.86450 * 9 7 6 11 11 C 1.50698 * 109.46760 * 90.00316 * 10 9 7 12 12 H 1.08004 * 120.00515 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00211 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00270 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99427 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47139 * 90.00181 * 15 13 11 17 17 H 1.48504 * 109.46888 * 209.99567 * 15 13 11 18 18 H 1.48500 * 109.47293 * 329.99675 * 15 13 11 19 19 C 1.39921 * 120.00330 * 4.87349 * 9 7 6 20 20 C 1.38875 * 120.06616 * 290.93799 * 19 9 7 21 21 C 1.38111 * 119.92714 * 179.74424 * 20 19 9 22 22 C 1.38285 * 120.07311 * 0.52947 * 21 20 19 23 23 C 1.38286 * 120.13847 * 359.71903 * 22 21 20 24 24 C 1.38115 * 120.07056 * 0.02792 * 23 22 21 25 25 H 1.09004 * 109.47319 * 300.00206 * 1 2 3 26 26 H 1.08998 * 109.47547 * 59.99477 * 1 2 3 27 27 H 1.09000 * 109.47084 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47059 * 240.00182 * 2 1 3 29 29 H 1.08999 * 109.47280 * 119.99790 * 2 1 3 30 30 H 1.09003 * 109.46920 * 180.02562 * 5 3 2 31 31 H 1.08996 * 109.47451 * 299.99654 * 5 3 2 32 32 H 1.08997 * 109.47486 * 60.00756 * 5 3 2 33 33 H 1.08991 * 109.47637 * 54.99870 * 6 3 2 34 34 H 1.08996 * 109.47148 * 294.99374 * 6 3 2 35 35 H 1.08996 * 109.47305 * 210.00035 * 10 9 7 36 36 H 1.08996 * 109.47003 * 330.01100 * 10 9 7 37 37 H 0.97002 * 120.00326 * 180.02562 * 14 13 11 38 38 H 1.07998 * 120.03671 * 359.96821 * 20 19 9 39 39 H 1.07997 * 119.96683 * 180.24762 * 21 20 19 40 40 H 1.07996 * 119.93287 * 179.70602 * 22 21 20 41 41 H 1.07997 * 119.96436 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.03742 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5648 1.4443 -0.1258 7 6 4.0569 2.8634 -0.2493 8 8 3.2624 3.7743 -0.3496 9 7 5.3801 3.1197 -0.2539 10 6 5.8579 4.5046 -0.2664 11 6 6.0243 4.9913 1.1501 12 1 5.7973 4.3347 1.9770 13 6 6.4673 6.2747 1.3906 14 7 6.6130 6.6993 2.6267 15 14 6.8605 7.4102 -0.0396 16 1 5.6414 8.1682 -0.4196 17 1 7.9289 8.3603 0.3620 18 1 7.3240 6.6050 -1.1981 19 6 6.2974 2.0632 -0.2468 20 6 6.4313 1.2656 0.8821 21 6 7.3340 0.2202 0.8841 22 6 8.1118 -0.0258 -0.2325 23 6 7.9845 0.7698 -1.3563 24 6 7.0799 1.8135 -1.3666 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.9982 3.1543 1.3072 31 1 0.5489 2.1253 1.3969 32 1 2.0699 1.5876 2.1492 33 1 3.8570 0.8801 -1.0113 34 1 4.0029 0.9837 0.7595 35 1 6.8167 4.5535 -0.7824 36 1 5.1340 5.1340 -0.7841 37 1 6.9243 7.6023 2.7958 38 1 5.8277 1.4602 1.7563 39 1 7.4358 -0.4029 1.7603 40 1 8.8202 -0.8409 -0.2267 41 1 8.5936 0.5754 -2.2267 42 1 6.9813 2.4348 -2.2445 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167399516.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:58 Heat of formation + Delta-G solvation = -23.695362 kcal Electronic energy + Delta-G solvation = -21690.060659 eV Core-core repulsion = 18634.559383 eV Total energy + Delta-G solvation = -3055.501277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.07518 -38.35111 -36.30047 -34.81484 -32.63146 -30.93140 -30.50681 -29.57646 -28.22527 -26.80033 -24.11132 -22.58056 -22.40891 -21.85315 -19.77474 -18.93542 -16.96752 -16.93632 -16.12485 -15.64105 -15.30583 -14.92858 -14.34654 -14.29002 -14.03000 -13.76761 -13.48384 -13.18141 -12.76432 -12.53514 -12.36555 -12.27623 -11.85262 -11.77269 -11.73543 -11.33896 -11.24770 -10.97556 -10.85476 -10.64317 -10.53594 -10.40998 -10.39546 -10.20066 -9.58228 -9.29399 -8.71949 -8.62258 -8.54201 -7.71843 -6.10544 -4.09503 1.52987 1.61311 3.25743 3.27921 3.33666 3.35408 3.70061 3.99925 4.37907 4.82203 4.96709 5.01213 5.13881 5.16184 5.20109 5.27097 5.33929 5.40809 5.61875 5.63890 5.70371 5.78657 5.81623 5.87427 5.94075 6.01737 6.04922 6.14310 6.20538 6.22988 6.34567 6.55624 6.60249 6.66529 6.69984 6.75163 6.79940 6.92095 7.06044 7.34690 7.56896 8.22159 8.43572 8.86767 8.93280 9.49004 11.02693 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.006856 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.118791 B = 4083.233844 C = 5564.914211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.076 4.076 4 H 0.077 0.923 5 C -0.153 4.153 6 C -0.137 4.137 7 C 0.518 3.482 8 O -0.527 6.527 9 N -0.560 5.560 10 C 0.217 3.783 11 C -0.528 4.528 12 H 0.075 0.925 13 C 0.075 3.925 14 N -0.896 5.896 15 Si 0.874 3.126 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.266 1.266 19 C 0.163 3.837 20 C -0.117 4.117 21 C -0.110 4.110 22 C -0.133 4.133 23 C -0.111 4.111 24 C -0.128 4.128 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.030 0.970 36 H 0.041 0.959 37 H 0.265 0.735 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.791 -16.127 -6.763 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.094 4.094 4 H 0.095 0.905 5 C -0.210 4.210 6 C -0.177 4.177 7 C 0.307 3.693 8 O -0.403 6.403 9 N -0.288 5.288 10 C 0.097 3.903 11 C -0.567 4.567 12 H 0.093 0.907 13 C -0.128 4.128 14 N -0.534 5.534 15 Si 0.701 3.299 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.191 1.191 19 C 0.071 3.929 20 C -0.137 4.137 21 C -0.128 4.128 22 C -0.151 4.151 23 C -0.130 4.130 24 C -0.148 4.148 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.193 -15.409 -6.708 17.107 hybrid contribution 0.504 0.775 -0.477 1.040 sum -2.688 -14.634 -7.185 16.523 Atomic orbital electron populations 1.21804 0.95974 1.01068 1.02097 1.21582 0.95894 0.96467 1.01677 1.20913 0.93127 0.95520 0.99883 0.90482 1.21956 1.00671 1.02526 0.95842 1.21837 0.97258 0.94836 1.03791 1.20481 0.81631 0.91098 0.76120 1.90642 1.53640 1.47393 1.48661 1.45643 1.04294 1.06911 1.71978 1.19778 0.94760 0.76904 0.98808 1.21258 1.45219 0.99118 0.91066 0.90688 1.24814 0.94828 0.97564 0.95592 1.69885 1.46549 1.18033 1.18926 0.86879 0.78662 0.81295 0.83071 1.19817 1.20964 1.19083 1.17690 0.92697 0.89378 0.93086 1.21406 0.99292 0.95883 0.97113 1.21000 0.96055 0.97523 0.98261 1.21069 1.00033 1.00189 0.93811 1.20946 0.98242 0.95376 0.98405 1.21287 0.97483 0.98237 0.97756 0.92373 0.92827 0.93170 0.92268 0.92073 0.90586 0.92988 0.93458 0.89626 0.89203 0.95162 0.94069 0.92519 0.85692 0.86028 0.86346 0.86129 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.67 37.16 0.36 -1.16 16 2 C -0.12 -1.30 5.40 -26.73 -0.14 -1.45 16 3 C -0.08 -1.07 2.03 -90.62 -0.18 -1.25 16 4 H 0.08 1.18 7.87 -51.93 -0.41 0.77 16 5 C -0.15 -2.34 8.69 37.16 0.32 -2.01 16 6 C -0.14 -2.09 3.91 -27.88 -0.11 -2.20 16 7 C 0.52 10.56 7.19 -10.98 -0.08 10.48 16 8 O -0.53 -12.54 13.77 5.55 0.08 -12.46 16 9 N -0.56 -11.86 2.50 -114.73 -0.29 -12.15 16 10 C 0.22 5.39 4.22 -5.19 -0.02 5.37 16 11 C -0.53 -15.26 9.94 -34.44 -0.34 -15.60 16 12 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 13 C 0.07 2.19 5.47 -17.82 -0.10 2.09 16 14 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 15 Si 0.87 21.72 27.47 -169.99 -4.67 17.06 16 16 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 19 C 0.16 2.92 4.53 -83.69 -0.38 2.55 16 20 C -0.12 -1.90 8.27 -39.39 -0.33 -2.22 16 21 C -0.11 -1.45 10.04 -39.61 -0.40 -1.84 16 22 C -0.13 -1.60 10.04 -39.55 -0.40 -2.00 16 23 C -0.11 -1.42 10.04 -39.61 -0.40 -1.82 16 24 C -0.13 -1.99 9.72 -39.39 -0.38 -2.37 16 25 H 0.06 0.59 6.57 -51.93 -0.34 0.25 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.45 6.18 -51.93 -0.32 1.13 16 31 H 0.05 0.70 6.56 -51.93 -0.34 0.36 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.09 1.29 6.33 -51.93 -0.33 0.96 16 35 H 0.03 0.73 6.94 -51.93 -0.36 0.37 16 36 H 0.04 1.08 6.79 -51.93 -0.35 0.72 16 37 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 38 H 0.13 2.08 7.63 -52.49 -0.40 1.68 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 41 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 339.93 15.07 5.12 5.12 Total: -1.00 -32.60 339.93 -8.23 -40.83 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -6.67 Total: 1.95 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -2.58 Total: -13.44 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.49 Total: -39.05 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.08 Total: -12.46 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.60 -8.23 -40.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167399516.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.134 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds