Wall clock time and date at job start Mon Mar 30 2020 07:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47232 * 2 1 4 4 H 1.09004 * 109.46628 * 305.00385 * 3 2 1 5 5 C 1.52998 * 109.46825 * 64.99879 * 3 2 1 6 6 C 1.52994 * 109.47060 * 185.00401 * 3 2 1 7 7 C 1.50703 * 109.46886 * 174.99960 * 6 3 2 8 8 O 1.21288 * 120.00129 * 353.88218 * 7 6 3 9 9 N 1.34777 * 119.99713 * 174.15122 * 7 6 3 10 10 C 1.46509 * 119.99810 * 184.86450 * 9 7 6 11 11 C 1.50698 * 109.46760 * 90.00316 * 10 9 7 12 12 H 1.08004 * 120.00515 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00211 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00270 * 180.02562 * 13 11 10 15 15 Si 1.86799 * 119.99427 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47139 * 90.00181 * 15 13 11 17 17 H 1.48504 * 109.46888 * 209.99567 * 15 13 11 18 18 H 1.48500 * 109.47293 * 329.99675 * 15 13 11 19 19 C 1.39921 * 120.00330 * 4.87349 * 9 7 6 20 20 C 1.38875 * 120.06616 * 290.93799 * 19 9 7 21 21 C 1.38111 * 119.92714 * 179.74424 * 20 19 9 22 22 C 1.38285 * 120.07311 * 0.52947 * 21 20 19 23 23 C 1.38286 * 120.13847 * 359.71903 * 22 21 20 24 24 C 1.38115 * 120.07056 * 0.02792 * 23 22 21 25 25 H 1.09004 * 109.47319 * 300.00206 * 1 2 3 26 26 H 1.08998 * 109.47547 * 59.99477 * 1 2 3 27 27 H 1.09000 * 109.47084 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47059 * 240.00182 * 2 1 3 29 29 H 1.08999 * 109.47280 * 119.99790 * 2 1 3 30 30 H 1.09003 * 109.46920 * 180.02562 * 5 3 2 31 31 H 1.08996 * 109.47451 * 299.99654 * 5 3 2 32 32 H 1.08997 * 109.47486 * 60.00756 * 5 3 2 33 33 H 1.08991 * 109.47637 * 54.99870 * 6 3 2 34 34 H 1.08996 * 109.47148 * 294.99374 * 6 3 2 35 35 H 1.08996 * 109.47305 * 210.00035 * 10 9 7 36 36 H 1.08996 * 109.47003 * 330.01100 * 10 9 7 37 37 H 0.97002 * 120.00326 * 180.02562 * 14 13 11 38 38 H 1.07998 * 120.03671 * 359.96821 * 20 19 9 39 39 H 1.07997 * 119.96683 * 180.24762 * 21 20 19 40 40 H 1.07996 * 119.93287 * 179.70602 * 22 21 20 41 41 H 1.07997 * 119.96436 * 179.97438 * 23 22 21 42 42 H 1.08002 * 120.03742 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5648 1.4443 -0.1258 7 6 4.0569 2.8634 -0.2493 8 8 3.2624 3.7743 -0.3496 9 7 5.3801 3.1197 -0.2539 10 6 5.8579 4.5046 -0.2664 11 6 6.0243 4.9913 1.1501 12 1 5.7973 4.3347 1.9770 13 6 6.4673 6.2747 1.3906 14 7 6.6130 6.6993 2.6267 15 14 6.8605 7.4102 -0.0396 16 1 5.6414 8.1682 -0.4196 17 1 7.9289 8.3603 0.3620 18 1 7.3240 6.6050 -1.1981 19 6 6.2974 2.0632 -0.2468 20 6 6.4313 1.2656 0.8821 21 6 7.3340 0.2202 0.8841 22 6 8.1118 -0.0258 -0.2325 23 6 7.9845 0.7698 -1.3563 24 6 7.0799 1.8135 -1.3666 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.9982 3.1543 1.3072 31 1 0.5489 2.1253 1.3969 32 1 2.0699 1.5876 2.1492 33 1 3.8570 0.8801 -1.0113 34 1 4.0029 0.9837 0.7595 35 1 6.8167 4.5535 -0.7824 36 1 5.1340 5.1340 -0.7841 37 1 6.9243 7.6023 2.7958 38 1 5.8277 1.4602 1.7563 39 1 7.4358 -0.4029 1.7603 40 1 8.8202 -0.8409 -0.2267 41 1 8.5936 0.5754 -2.2267 42 1 6.9813 2.4348 -2.2445 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167399516.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:57 Heat of formation + Delta-G solvation = -42.281655 kcal Electronic energy + Delta-G solvation = -21690.866622 eV Core-core repulsion = 18634.559383 eV Total energy + Delta-G solvation = -3056.307239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.53193 -39.62752 -37.51417 -36.38614 -34.77655 -32.14438 -31.65404 -30.99633 -29.71512 -28.32405 -25.39989 -24.14690 -23.56952 -23.24904 -20.92982 -20.32376 -19.15945 -18.37405 -17.49831 -17.10610 -16.78450 -16.07932 -15.99371 -15.57577 -15.39285 -14.95746 -14.80155 -14.54346 -14.28521 -13.97418 -13.78361 -13.61557 -13.45105 -13.24061 -12.82551 -12.77155 -12.57197 -12.34878 -12.22194 -12.17722 -11.96890 -11.78842 -11.74748 -11.53208 -11.40817 -10.87852 -10.82417 -10.04219 -9.81374 -9.22288 -8.38522 -6.43856 0.37397 0.51326 1.27906 1.31747 1.40197 1.68000 2.18314 2.26336 2.87476 2.95723 3.58743 3.82190 3.94682 4.07863 4.13471 4.19005 4.32907 4.43710 4.53689 4.58998 4.61031 4.66108 4.67977 4.74036 4.80568 4.82735 4.85992 4.89585 5.10289 5.14413 5.16289 5.22787 5.32118 5.36733 5.41173 5.50766 5.56028 5.58059 5.63726 5.73390 6.06812 6.18612 6.55846 6.66942 7.15518 7.32510 8.78334 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.006856 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.118791 B = 4083.233844 C = 5564.914211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C -0.073 4.073 4 H 0.061 0.939 5 C -0.150 4.150 6 C -0.122 4.122 7 C 0.506 3.494 8 O -0.574 6.574 9 N -0.565 5.565 10 C 0.228 3.772 11 C -0.535 4.535 12 H 0.028 0.972 13 C 0.015 3.985 14 N -0.942 5.942 15 Si 0.945 3.055 16 H -0.273 1.273 17 H -0.271 1.271 18 H -0.242 1.242 19 C 0.124 3.876 20 C -0.135 4.135 21 C -0.106 4.106 22 C -0.118 4.118 23 C -0.102 4.102 24 C -0.138 4.138 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.042 0.958 36 H 0.025 0.975 37 H 0.269 0.731 38 H 0.104 0.896 39 H 0.149 0.851 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.314 -18.937 -8.725 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.092 4.092 4 H 0.079 0.921 5 C -0.207 4.207 6 C -0.162 4.162 7 C 0.297 3.703 8 O -0.454 6.454 9 N -0.293 5.293 10 C 0.107 3.893 11 C -0.574 4.574 12 H 0.047 0.953 13 C -0.183 4.183 14 N -0.582 5.582 15 Si 0.767 3.233 16 H -0.198 1.198 17 H -0.196 1.196 18 H -0.166 1.166 19 C 0.034 3.966 20 C -0.155 4.155 21 C -0.124 4.124 22 C -0.136 4.136 23 C -0.121 4.121 24 C -0.158 4.158 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.128 0.872 34 H 0.117 0.883 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.167 0.833 40 H 0.177 0.823 41 H 0.174 0.826 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.695 -18.275 -8.675 20.300 hybrid contribution 0.083 1.544 0.227 1.563 sum -1.613 -16.731 -8.448 18.812 Atomic orbital electron populations 1.21808 0.95126 1.02248 1.01769 1.21526 0.96569 0.93742 1.02927 1.20922 0.92276 0.97678 0.98299 0.92053 1.21904 1.01710 0.99898 0.97175 1.21825 0.97845 0.91326 1.05182 1.21480 0.81123 0.92891 0.74797 1.90606 1.54750 1.49226 1.50787 1.45594 1.05391 1.06407 1.71862 1.19380 0.94744 0.79374 0.95852 1.21445 1.45023 0.98910 0.91994 0.95317 1.25791 0.94511 0.99322 0.98709 1.70033 1.47809 1.18836 1.21477 0.85761 0.78657 0.79030 0.79849 1.19811 1.19621 1.16560 1.17975 0.93991 0.89638 0.95027 1.21375 1.00624 0.97352 0.96104 1.21328 0.94756 0.96434 0.99887 1.21561 0.99258 1.00282 0.92493 1.21358 0.97055 0.93766 0.99885 1.21415 0.97860 0.99499 0.96989 0.92877 0.93074 0.91198 0.90676 0.91096 0.95288 0.91294 0.92709 0.87209 0.88309 0.93981 0.95689 0.92150 0.87744 0.83335 0.82293 0.82624 0.86005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.67 71.98 0.70 -2.05 16 2 C -0.11 -2.20 5.40 30.59 0.17 -2.03 16 3 C -0.07 -2.06 2.03 -10.79 -0.02 -2.09 16 4 H 0.06 1.93 7.87 -2.38 -0.02 1.91 16 5 C -0.15 -4.78 8.69 71.98 0.63 -4.16 16 6 C -0.12 -3.75 3.91 29.85 0.12 -3.64 16 7 C 0.51 21.71 7.19 87.66 0.63 22.34 16 8 O -0.57 -29.23 13.77 -3.05 -0.04 -29.27 16 9 N -0.57 -24.92 2.50 -635.29 -1.59 -26.50 16 10 C 0.23 11.73 4.22 85.63 0.36 12.09 16 11 C -0.54 -32.61 9.94 25.60 0.25 -32.35 16 12 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 13 C 0.02 0.91 5.47 84.66 0.46 1.37 16 14 N -0.94 -60.49 13.96 21.45 0.30 -60.19 16 15 Si 0.94 45.55 27.47 68.60 1.88 47.44 16 16 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.24 -10.66 6.54 99.48 0.65 -10.01 16 19 C 0.12 4.45 4.53 38.15 0.17 4.63 16 20 C -0.13 -4.35 8.27 22.39 0.19 -4.17 16 21 C -0.11 -2.49 10.04 22.25 0.22 -2.26 16 22 C -0.12 -2.30 10.04 22.29 0.22 -2.07 16 23 C -0.10 -2.20 10.04 22.25 0.22 -1.97 16 24 C -0.14 -4.06 9.72 22.39 0.22 -3.84 16 25 H 0.05 1.00 6.57 -2.38 -0.02 0.98 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.03 1.18 6.18 -2.39 -0.01 1.17 16 31 H 0.07 1.90 6.56 -2.39 -0.02 1.89 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.10 2.86 6.33 -2.39 -0.02 2.85 16 35 H 0.04 2.05 6.94 -2.39 -0.02 2.03 16 36 H 0.03 1.36 6.79 -2.39 -0.02 1.34 16 37 H 0.27 16.04 8.31 -92.71 -0.77 15.26 16 38 H 0.10 3.69 7.63 -2.91 -0.02 3.66 16 39 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 40 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 41 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 42 H 0.12 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -76.78 339.93 6.02 -70.77 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.93 Total: 17.95 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: 4.54 Total: -20.19 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -1.29 Total: -86.70 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.04 Total: -29.27 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.88 Total: 47.44 kcal Total: -76.78 6.02 -70.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167399516.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.486 kcal (2) G-P(sol) polarization free energy of solvation -76.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds