Wall clock time and date at job start Mon Mar 30 2020 07:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32652 * 119.99072 * 2 1 4 4 C 1.47727 * 119.99307 * 176.75431 * 3 2 1 5 5 C 1.39644 * 120.07754 * 315.63763 * 4 3 2 6 6 C 1.37775 * 119.92637 * 179.74003 * 5 4 3 7 7 C 1.39031 * 120.07567 * 0.53613 * 6 5 4 8 8 O 1.35686 * 119.93033 * 179.69516 * 7 6 5 9 9 C 1.34814 * 116.99893 * 173.89024 * 8 7 6 10 10 H 1.08003 * 120.00388 * 354.09474 * 9 8 7 11 11 C 1.38646 * 119.99610 * 174.10571 * 9 8 7 12 12 N 1.31558 * 120.00349 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99590 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47245 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46969 * 119.99877 * 13 11 9 16 16 H 1.48494 * 109.46962 * 239.99181 * 13 11 9 17 17 C 1.39040 * 120.14438 * 359.71749 * 7 6 5 18 18 C 1.37779 * 120.07149 * 0.02562 * 17 7 6 19 19 C 1.50697 * 120.00628 * 179.97438 * 2 1 3 20 20 N 1.46900 * 109.47000 * 285.33723 * 19 2 1 21 21 C 1.46897 * 110.99953 * 178.65621 * 20 19 2 22 22 C 1.52997 * 109.47277 * 85.00316 * 21 20 19 23 23 C 1.53005 * 109.47331 * 205.00341 * 21 20 19 24 24 H 1.08998 * 109.47362 * 269.99352 * 1 2 3 25 25 H 1.08992 * 109.47400 * 30.00722 * 1 2 3 26 26 H 1.09007 * 109.46873 * 150.00655 * 1 2 3 27 27 H 1.07995 * 120.00841 * 356.75353 * 3 2 1 28 28 H 1.08001 * 120.03063 * 359.97438 * 5 4 3 29 29 H 1.08003 * 119.96223 * 180.26930 * 6 5 4 30 30 H 0.96993 * 120.00097 * 180.02562 * 12 11 9 31 31 H 1.07997 * 119.96455 * 179.97438 * 17 7 6 32 32 H 1.08003 * 120.03369 * 180.02562 * 18 17 7 33 33 H 1.08995 * 109.46911 * 45.33507 * 19 2 1 34 34 H 1.08998 * 109.47501 * 165.33814 * 19 2 1 35 35 H 1.00900 * 111.00395 * 302.61150 * 20 19 2 36 36 H 1.08998 * 109.47356 * 325.00064 * 21 20 19 37 37 H 1.09004 * 109.46880 * 299.99496 * 22 21 20 38 38 H 1.09000 * 109.47314 * 60.00128 * 22 21 20 39 39 H 1.09002 * 109.47361 * 180.02562 * 22 21 20 40 40 H 1.08996 * 109.46827 * 59.99470 * 23 21 20 41 41 H 1.09002 * 109.47224 * 180.02562 * 23 21 20 42 42 H 1.08998 * 109.46675 * 300.00141 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1701 1.1489 0.0000 4 6 3.6455 1.1500 0.0724 5 6 4.3026 0.3108 0.9748 6 6 5.6790 0.3105 1.0360 7 6 6.4134 1.1524 0.2085 8 8 7.7686 1.1541 0.2756 9 6 8.4256 1.8971 -0.6376 10 1 7.8800 2.3789 -1.4354 11 6 9.8018 2.0423 -0.5525 12 7 10.4664 1.4556 0.4195 13 14 10.7123 3.0712 -1.8182 14 1 9.7430 3.6191 -2.8007 15 1 11.4122 4.1894 -1.1363 16 1 11.7057 2.2226 -2.5239 17 6 5.7622 1.9930 -0.6874 18 6 4.3862 1.9945 -0.7573 19 6 2.2606 -1.3050 0.0006 20 7 2.1882 -1.9116 1.3365 21 6 2.8866 -3.2036 1.3665 22 6 4.3768 -2.9721 1.6244 23 6 2.3046 -4.0721 2.4837 24 1 -0.3634 -0.0001 1.0276 25 1 -0.3634 0.8898 -0.5139 26 1 -0.3633 -0.8901 -0.5138 27 1 1.6314 2.0834 -0.0530 28 1 3.7324 -0.3399 1.6212 29 1 6.1878 -0.3415 1.7306 30 1 11.4291 1.5576 0.4792 31 1 6.3356 2.6461 -1.3285 32 1 3.8810 2.6474 -1.4537 33 1 1.8167 -1.9812 -0.7300 34 1 3.3033 -1.1226 -0.2596 35 1 2.5549 -1.2860 2.0381 36 1 2.7576 -3.7087 0.4093 37 1 4.7914 -2.3535 0.8284 38 1 4.5057 -2.4671 2.5817 39 1 4.8950 -3.9308 1.6462 40 1 1.2430 -4.2370 2.3000 41 1 2.8231 -5.0307 2.5062 42 1 2.4335 -3.5671 3.4410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212294913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:53 Heat of formation + Delta-G solvation = 5.560247 kcal Electronic energy + Delta-G solvation = -21123.582293 eV Core-core repulsion = 18069.349635 eV Total energy + Delta-G solvation = -3054.232658 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.36710 -38.05541 -36.43672 -34.77869 -32.35129 -30.80403 -30.14797 -29.60297 -27.05424 -26.13247 -25.32219 -24.51371 -21.99782 -21.16583 -20.68100 -18.30773 -17.92394 -16.85040 -15.72826 -15.33717 -14.92745 -14.78361 -14.52656 -14.19017 -13.60581 -13.55284 -13.41822 -13.22895 -12.97323 -12.74300 -12.62435 -12.17063 -12.12256 -12.04326 -11.75903 -11.65926 -11.36463 -11.20305 -11.05520 -10.86314 -10.74993 -10.62162 -10.48503 -10.37852 -9.43494 -9.09413 -8.64824 -8.36489 -8.13857 -7.03111 -6.52251 -4.09869 1.77995 2.16954 2.77968 3.09593 3.09960 3.15516 3.91140 4.32036 4.54168 4.89075 5.03303 5.08018 5.13996 5.19594 5.21368 5.33848 5.52899 5.61282 5.63809 5.65435 5.73217 5.79124 5.84388 5.90031 5.91601 5.99976 6.04061 6.07781 6.14321 6.19623 6.33294 6.37682 6.59648 6.70116 6.81820 6.99761 7.04322 7.14533 7.23279 7.34568 7.37032 7.50815 7.76003 7.92909 8.93444 9.62833 10.65503 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022304 B = 0.004249 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.065401 B = 6587.955826 C = 7610.993905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.143 4.143 3 C -0.086 4.086 4 C -0.164 4.164 5 C -0.065 4.065 6 C -0.196 4.196 7 C 0.157 3.843 8 O -0.174 6.174 9 C -0.392 4.392 10 H 0.093 0.907 11 C 0.040 3.960 12 N -0.860 5.860 13 Si 0.941 3.059 14 H -0.266 1.266 15 H -0.275 1.275 16 H -0.275 1.275 17 C -0.235 4.235 18 C -0.056 4.056 19 C 0.086 3.914 20 N -0.680 5.680 21 C 0.077 3.923 22 C -0.189 4.189 23 C -0.138 4.138 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.116 0.884 30 H 0.270 0.730 31 H 0.128 0.872 32 H 0.108 0.892 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.339 0.661 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.829 -4.946 -0.018 15.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.144 4.144 3 C -0.105 4.105 4 C -0.165 4.165 5 C -0.083 4.083 6 C -0.215 4.215 7 C 0.102 3.898 8 O -0.077 6.077 9 C -0.468 4.468 10 H 0.111 0.889 11 C -0.165 4.165 12 N -0.494 5.494 13 Si 0.766 3.234 14 H -0.190 1.190 15 H -0.201 1.201 16 H -0.201 1.201 17 C -0.254 4.254 18 C -0.075 4.075 19 C -0.041 4.041 20 N -0.314 5.314 21 C -0.033 4.033 22 C -0.248 4.248 23 C -0.196 4.196 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.127 0.873 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.127 0.873 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.161 0.839 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.025 -5.377 0.106 15.959 hybrid contribution 1.476 0.936 -0.664 1.869 sum -13.550 -4.441 -0.558 14.270 Atomic orbital electron populations 1.20602 0.92147 1.01293 1.01591 1.21769 0.95277 0.93931 1.03407 1.21465 0.92513 0.96784 0.99725 1.18481 0.92091 1.03237 1.02712 1.20952 0.93144 0.97023 0.97202 1.20101 0.93032 1.04047 1.04331 1.19493 0.84919 0.92542 0.92817 1.83972 1.12398 1.60829 1.50483 1.21398 0.90036 1.29689 1.05663 0.88944 1.25312 0.95676 0.97514 0.97978 1.70043 1.08527 1.40475 1.30354 0.85641 0.79429 0.79022 0.79333 1.19036 1.20060 1.20068 1.21118 0.94468 1.04857 1.04939 1.20827 0.93191 0.96508 0.96927 1.21114 0.99312 0.92997 0.90719 1.60866 1.59389 1.05077 1.06027 1.21565 0.91423 0.91017 0.99333 1.22616 0.97181 1.02459 1.02518 1.21758 1.00995 0.98539 0.98269 0.91764 0.92790 0.92430 0.87342 0.87007 0.86640 0.91960 0.85460 0.87349 0.91386 0.92497 0.83883 0.90809 0.91649 0.92370 0.92264 0.92318 0.92734 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 10.04 36.00 0.36 -0.71 16 2 C -0.14 -1.87 5.55 -101.25 -0.56 -2.43 16 3 C -0.09 -1.23 9.35 -37.60 -0.35 -1.58 16 4 C -0.16 -2.83 5.00 -104.97 -0.52 -3.36 16 5 C -0.06 -1.13 6.59 -39.23 -0.26 -1.39 16 6 C -0.20 -4.04 9.68 -39.46 -0.38 -4.42 16 7 C 0.16 3.73 6.65 -38.99 -0.26 3.47 16 8 O -0.17 -4.90 9.75 0.29 0.00 -4.90 16 9 C -0.39 -10.81 9.43 30.88 0.29 -10.52 16 10 H 0.09 2.37 5.30 -52.48 -0.28 2.09 16 11 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 12 N -0.86 -24.89 13.67 55.48 0.76 -24.13 16 13 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 16 14 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 15 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 16 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 17 C -0.23 -5.05 9.11 -39.45 -0.36 -5.41 16 18 C -0.06 -1.03 9.78 -39.22 -0.38 -1.42 16 19 C 0.09 1.15 4.68 -4.98 -0.02 1.12 16 20 N -0.68 -8.29 6.07 -108.00 -0.66 -8.95 16 21 C 0.08 0.87 3.20 -67.71 -0.22 0.65 16 22 C -0.19 -2.32 8.42 37.16 0.31 -2.01 16 23 C -0.14 -1.35 9.52 37.16 0.35 -1.00 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.53 8.06 -51.93 -0.42 0.11 16 26 H 0.06 0.59 8.12 -51.92 -0.42 0.16 16 27 H 0.11 1.40 8.05 -52.49 -0.42 0.98 16 28 H 0.11 1.71 3.59 -52.49 -0.19 1.52 16 29 H 0.12 2.32 8.06 -52.48 -0.42 1.90 16 30 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.13 2.75 5.71 -52.49 -0.30 2.45 16 32 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 33 H 0.07 0.86 8.02 -51.93 -0.42 0.45 16 34 H 0.06 0.88 4.54 -51.93 -0.24 0.64 16 35 H 0.34 4.31 6.02 -39.29 -0.24 4.07 16 36 H 0.07 0.84 7.78 -51.93 -0.40 0.43 16 37 H 0.06 0.94 6.41 -51.93 -0.33 0.60 16 38 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 337.73 15.07 5.09 5.09 Total: -1.00 -28.86 337.73 -8.10 -36.95 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -6.17 Total: 8.73 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: -2.10 Total: -28.01 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.10 Total: -33.08 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: 0.00 Total: -4.90 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.86 -8.10 -36.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212294913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.513 kcal (2) G-P(sol) polarization free energy of solvation -28.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds