Wall clock time and date at job start Mon Mar 30 2020 07:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32652 * 119.99072 * 2 1 4 4 C 1.47727 * 119.99307 * 176.75431 * 3 2 1 5 5 C 1.39644 * 120.07754 * 315.63763 * 4 3 2 6 6 C 1.37775 * 119.92637 * 179.74003 * 5 4 3 7 7 C 1.39031 * 120.07567 * 0.53613 * 6 5 4 8 8 O 1.35686 * 119.93033 * 179.69516 * 7 6 5 9 9 C 1.34814 * 116.99893 * 173.89024 * 8 7 6 10 10 H 1.08003 * 120.00388 * 354.09474 * 9 8 7 11 11 C 1.38646 * 119.99610 * 174.10571 * 9 8 7 12 12 N 1.31558 * 120.00349 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99590 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47245 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46969 * 119.99877 * 13 11 9 16 16 H 1.48494 * 109.46962 * 239.99181 * 13 11 9 17 17 C 1.39040 * 120.14438 * 359.71749 * 7 6 5 18 18 C 1.37779 * 120.07149 * 0.02562 * 17 7 6 19 19 C 1.50697 * 120.00628 * 179.97438 * 2 1 3 20 20 N 1.46900 * 109.47000 * 285.33723 * 19 2 1 21 21 C 1.46897 * 110.99953 * 178.65621 * 20 19 2 22 22 C 1.52997 * 109.47277 * 85.00316 * 21 20 19 23 23 C 1.53005 * 109.47331 * 205.00341 * 21 20 19 24 24 H 1.08998 * 109.47362 * 269.99352 * 1 2 3 25 25 H 1.08992 * 109.47400 * 30.00722 * 1 2 3 26 26 H 1.09007 * 109.46873 * 150.00655 * 1 2 3 27 27 H 1.07995 * 120.00841 * 356.75353 * 3 2 1 28 28 H 1.08001 * 120.03063 * 359.97438 * 5 4 3 29 29 H 1.08003 * 119.96223 * 180.26930 * 6 5 4 30 30 H 0.96993 * 120.00097 * 180.02562 * 12 11 9 31 31 H 1.07997 * 119.96455 * 179.97438 * 17 7 6 32 32 H 1.08003 * 120.03369 * 180.02562 * 18 17 7 33 33 H 1.08995 * 109.46911 * 45.33507 * 19 2 1 34 34 H 1.08998 * 109.47501 * 165.33814 * 19 2 1 35 35 H 1.00900 * 111.00395 * 302.61150 * 20 19 2 36 36 H 1.08998 * 109.47356 * 325.00064 * 21 20 19 37 37 H 1.09004 * 109.46880 * 299.99496 * 22 21 20 38 38 H 1.09000 * 109.47314 * 60.00128 * 22 21 20 39 39 H 1.09002 * 109.47361 * 180.02562 * 22 21 20 40 40 H 1.08996 * 109.46827 * 59.99470 * 23 21 20 41 41 H 1.09002 * 109.47224 * 180.02562 * 23 21 20 42 42 H 1.08998 * 109.46675 * 300.00141 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1701 1.1489 0.0000 4 6 3.6455 1.1500 0.0724 5 6 4.3026 0.3108 0.9748 6 6 5.6790 0.3105 1.0360 7 6 6.4134 1.1524 0.2085 8 8 7.7686 1.1541 0.2756 9 6 8.4256 1.8971 -0.6376 10 1 7.8800 2.3789 -1.4354 11 6 9.8018 2.0423 -0.5525 12 7 10.4664 1.4556 0.4195 13 14 10.7123 3.0712 -1.8182 14 1 9.7430 3.6191 -2.8007 15 1 11.4122 4.1894 -1.1363 16 1 11.7057 2.2226 -2.5239 17 6 5.7622 1.9930 -0.6874 18 6 4.3862 1.9945 -0.7573 19 6 2.2606 -1.3050 0.0006 20 7 2.1882 -1.9116 1.3365 21 6 2.8866 -3.2036 1.3665 22 6 4.3768 -2.9721 1.6244 23 6 2.3046 -4.0721 2.4837 24 1 -0.3634 -0.0001 1.0276 25 1 -0.3634 0.8898 -0.5139 26 1 -0.3633 -0.8901 -0.5138 27 1 1.6314 2.0834 -0.0530 28 1 3.7324 -0.3399 1.6212 29 1 6.1878 -0.3415 1.7306 30 1 11.4291 1.5576 0.4792 31 1 6.3356 2.6461 -1.3285 32 1 3.8810 2.6474 -1.4537 33 1 1.8167 -1.9812 -0.7300 34 1 3.3033 -1.1226 -0.2596 35 1 2.5549 -1.2860 2.0381 36 1 2.7576 -3.7087 0.4093 37 1 4.7914 -2.3535 0.8284 38 1 4.5057 -2.4671 2.5817 39 1 4.8950 -3.9308 1.6462 40 1 1.2430 -4.2370 2.3000 41 1 2.8231 -5.0307 2.5062 42 1 2.4335 -3.5671 3.4410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212294913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:55:52 Heat of formation + Delta-G solvation = -11.109718 kcal Electronic energy + Delta-G solvation = -21124.305157 eV Core-core repulsion = 18069.349635 eV Total energy + Delta-G solvation = -3054.955522 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.96125 -39.46010 -37.82812 -35.99006 -34.29428 -32.10732 -31.53380 -30.93857 -28.00830 -27.71446 -26.78718 -25.73302 -23.61421 -22.64876 -21.74464 -19.98787 -19.36560 -18.54844 -16.97109 -16.47599 -16.40874 -16.24331 -16.08448 -15.63133 -15.30342 -14.93349 -14.66154 -14.36645 -14.21464 -14.11695 -13.75760 -13.58516 -13.45691 -13.13194 -13.04082 -12.90091 -12.69141 -12.48521 -12.35557 -12.16306 -12.12690 -12.05793 -11.69907 -11.59729 -11.24929 -10.87751 -10.05993 -9.84737 -9.30000 -8.63472 -8.50456 -6.17711 0.35342 0.55392 1.33731 1.36845 1.51576 1.51986 2.15309 2.81007 3.13957 3.30039 3.48501 3.87024 3.98905 4.05912 4.10781 4.13402 4.22635 4.34501 4.44081 4.50564 4.66089 4.73269 4.76068 4.85777 4.87978 4.93867 4.98432 5.01341 5.06677 5.09008 5.13287 5.18346 5.27753 5.28281 5.43425 5.45397 5.65349 5.66696 5.78085 5.98901 6.00972 6.10921 6.16284 6.44497 6.94370 7.74300 8.72815 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022304 B = 0.004249 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.065401 B = 6587.955826 C = 7610.993905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.117 4.117 3 C -0.111 4.111 4 C -0.137 4.137 5 C -0.057 4.057 6 C -0.201 4.201 7 C 0.115 3.885 8 O -0.229 6.229 9 C -0.414 4.414 10 H 0.101 0.899 11 C -0.021 4.021 12 N -0.919 5.919 13 Si 1.018 2.982 14 H -0.251 1.251 15 H -0.268 1.268 16 H -0.268 1.268 17 C -0.241 4.241 18 C -0.060 4.060 19 C 0.082 3.918 20 N -0.672 5.672 21 C 0.078 3.922 22 C -0.186 4.186 23 C -0.132 4.132 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.133 0.867 28 H 0.137 0.863 29 H 0.110 0.890 30 H 0.273 0.727 31 H 0.120 0.880 32 H 0.142 0.858 33 H 0.079 0.921 34 H 0.032 0.968 35 H 0.336 0.664 36 H 0.076 0.924 37 H 0.039 0.961 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.371 -4.882 -0.840 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.130 4.130 4 C -0.138 4.138 5 C -0.075 4.075 6 C -0.220 4.220 7 C 0.065 3.935 8 O -0.136 6.136 9 C -0.490 4.490 10 H 0.119 0.881 11 C -0.219 4.219 12 N -0.557 5.557 13 Si 0.837 3.163 14 H -0.175 1.175 15 H -0.193 1.193 16 H -0.193 1.193 17 C -0.261 4.261 18 C -0.078 4.078 19 C -0.046 4.046 20 N -0.306 5.306 21 C -0.032 4.032 22 C -0.245 4.245 23 C -0.190 4.190 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.151 0.849 28 H 0.154 0.846 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.160 0.840 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.158 0.842 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.639 -5.322 -0.716 19.397 hybrid contribution 2.125 0.740 -0.358 2.279 sum -16.514 -4.582 -1.074 17.172 Atomic orbital electron populations 1.20659 0.89771 1.02599 1.02510 1.22063 0.96837 0.93091 0.99731 1.21488 0.90343 0.98482 1.02678 1.18949 0.94173 1.00529 1.00130 1.21210 0.91824 0.97137 0.97350 1.20272 0.94332 1.03522 1.03859 1.20006 0.84159 0.94497 0.94856 1.83933 1.14422 1.63107 1.52089 1.21855 0.90847 1.29915 1.06371 0.88148 1.26584 0.96251 0.98736 1.00307 1.70183 1.08920 1.43364 1.33204 0.84536 0.77982 0.77168 0.76573 1.17468 1.19256 1.19301 1.21213 0.95965 1.04466 1.04409 1.21184 0.91869 0.97164 0.97537 1.21150 0.98036 0.93778 0.91610 1.60916 1.59228 1.05189 1.05235 1.21617 0.90505 0.90818 1.00211 1.22590 0.98167 1.02393 1.01384 1.21709 1.01261 0.98631 0.97395 0.90858 0.91185 0.91548 0.84920 0.84555 0.87181 0.91773 0.86214 0.84001 0.90294 0.94995 0.84225 0.90576 0.94173 0.92532 0.91443 0.91823 0.91637 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 10.04 71.24 0.72 -0.93 16 2 C -0.12 -2.58 5.55 -17.62 -0.10 -2.68 16 3 C -0.11 -2.76 9.35 23.61 0.22 -2.54 16 4 C -0.14 -4.44 5.00 -20.09 -0.10 -4.54 16 5 C -0.06 -1.95 6.59 22.50 0.15 -1.81 16 6 C -0.20 -8.61 9.68 22.35 0.22 -8.39 16 7 C 0.12 5.80 6.65 22.65 0.15 5.95 16 8 O -0.23 -13.86 9.75 -21.86 -0.21 -14.07 16 9 C -0.41 -24.18 9.43 67.92 0.64 -23.54 16 10 H 0.10 5.40 5.30 -2.91 -0.02 5.39 16 11 C -0.02 -1.20 5.49 84.83 0.47 -0.73 16 12 N -0.92 -56.37 13.67 21.61 0.30 -56.08 16 13 Si 1.02 42.81 29.55 68.60 2.03 44.84 16 14 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 15 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 16 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 17 C -0.24 -10.63 9.11 22.35 0.20 -10.43 16 18 C -0.06 -2.10 9.78 22.50 0.22 -1.88 16 19 C 0.08 1.95 4.68 85.56 0.40 2.35 16 20 N -0.67 -14.60 6.07 -495.60 -3.01 -17.61 16 21 C 0.08 1.61 3.20 44.92 0.14 1.75 16 22 C -0.19 -4.46 8.42 71.98 0.61 -3.86 16 23 C -0.13 -2.25 9.52 71.98 0.69 -1.57 16 24 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 25 H 0.07 1.00 8.06 -2.39 -0.02 0.98 16 26 H 0.07 1.03 8.12 -2.38 -0.02 1.01 16 27 H 0.13 2.78 8.05 -2.91 -0.02 2.76 16 28 H 0.14 3.97 3.59 -2.91 -0.01 3.95 16 29 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 30 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 31 H 0.12 5.36 5.71 -2.91 -0.02 5.34 16 32 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 33 H 0.08 1.75 8.02 -2.39 -0.02 1.73 16 34 H 0.03 0.93 4.54 -2.39 -0.01 0.92 16 35 H 0.34 7.67 6.02 -89.69 -0.54 7.13 16 36 H 0.08 1.56 7.78 -2.39 -0.02 1.54 16 37 H 0.04 1.16 6.41 -2.38 -0.02 1.14 16 38 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 39 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -67.21 337.73 4.20 -63.02 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: 0.48 Total: 32.74 kcal Atomic # 6 Polarization: -57.44 SS G_CDS: 4.62 Total: -52.83 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -2.71 Total: -73.69 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.21 Total: -14.07 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -67.21 4.20 -63.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212294913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.907 kcal (2) G-P(sol) polarization free energy of solvation -67.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds