Wall clock time and date at job start Mon Mar 30 2020 07:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47152 * 2 1 4 4 H 1.09000 * 109.54143 * 305.10591 * 3 2 1 5 5 C 1.53095 * 109.50677 * 184.99669 * 3 2 1 6 6 N 1.47015 * 109.25803 * 183.21684 * 5 3 2 7 7 C 1.46905 * 110.99980 * 182.39497 * 6 5 3 8 8 H 1.09000 * 109.46811 * 300.53668 * 7 6 5 9 9 C 1.50701 * 109.46729 * 180.53970 * 7 6 5 10 10 H 1.07997 * 120.00554 * 329.62713 * 9 7 6 11 11 C 1.37881 * 119.99567 * 149.35221 * 9 7 6 12 12 N 1.31513 * 120.00258 * 354.58109 * 11 9 7 13 13 Si 1.86804 * 119.99888 * 174.57864 * 11 9 7 14 14 H 1.48504 * 109.46832 * 60.00379 * 13 11 9 15 15 H 1.48491 * 109.47071 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47143 * 300.00517 * 13 11 9 17 17 C 1.50694 * 109.47036 * 60.54166 * 7 6 5 18 18 C 1.38231 * 120.00594 * 45.86361 * 17 7 6 19 19 C 1.38230 * 120.00620 * 179.78681 * 18 17 7 20 20 C 1.38242 * 119.99476 * 0.46559 * 19 18 17 21 21 C 1.38232 * 120.00159 * 359.76602 * 20 19 18 22 22 C 1.38237 * 119.99923 * 0.02579 * 21 20 19 23 23 C 1.47005 * 110.75169 * 58.61658 * 6 5 3 24 24 C 1.53098 * 109.25910 * 301.38259 * 23 6 5 25 25 O 1.43014 * 109.25818 * 56.85210 * 24 23 6 26 26 H 1.08997 * 109.47020 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47059 * 299.99818 * 1 2 3 28 28 H 1.09003 * 109.46794 * 60.00455 * 1 2 3 29 29 H 1.09001 * 109.47743 * 240.00059 * 2 1 3 30 30 H 1.09001 * 109.47227 * 119.99843 * 2 1 3 31 31 H 1.09005 * 109.50842 * 63.27999 * 5 3 2 32 32 H 1.09000 * 109.50897 * 303.15024 * 5 3 2 33 33 H 0.96995 * 120.00230 * 179.97438 * 12 11 9 34 34 H 1.08002 * 119.99878 * 359.97438 * 18 17 7 35 35 H 1.07995 * 120.00562 * 180.25152 * 19 18 17 36 36 H 1.08007 * 119.99687 * 179.78771 * 20 19 18 37 37 H 1.08004 * 120.00019 * 179.97438 * 21 20 19 38 38 H 1.07998 * 119.99464 * 179.97438 * 22 21 20 39 39 H 1.09004 * 109.50836 * 61.32212 * 23 6 5 40 40 H 1.09006 * 109.50997 * 181.44869 * 23 6 5 41 41 H 1.08995 * 109.50995 * 296.91404 * 24 23 6 42 42 H 1.09003 * 109.50579 * 176.78142 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9832 -0.8404 5 6 3.5658 1.4453 -0.1257 6 7 4.0563 2.8290 -0.0476 7 6 5.5141 2.8814 -0.2212 8 1 5.9941 2.2878 0.5568 9 6 5.9806 4.3110 -0.1220 10 1 5.3294 5.1144 -0.4332 11 6 7.2367 4.5935 0.3714 12 7 7.9863 3.6268 0.8542 13 14 7.8738 6.3495 0.3539 14 1 6.9705 7.2117 1.1575 15 1 9.2395 6.3863 0.9358 16 1 7.9176 6.8463 -1.0448 17 6 5.8792 2.3266 -1.5738 18 6 5.1718 2.7175 -2.6952 19 6 5.5096 2.2119 -3.9366 20 6 6.5486 1.3078 -4.0553 21 6 7.2529 0.9131 -2.9332 22 6 6.9178 1.4221 -1.6924 23 6 3.6539 3.4535 1.2209 24 6 2.1272 3.4306 1.3331 25 8 1.6664 2.0811 1.2239 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8530 1.0108 -1.0833 32 1 3.9989 0.8594 0.6850 33 1 8.8701 3.8255 1.2009 34 1 4.3572 3.4204 -2.6019 35 1 4.9595 2.5205 -4.8133 36 1 6.8103 0.9101 -5.0248 37 1 8.0644 0.2064 -3.0259 38 1 7.4679 1.1134 -0.8158 39 1 4.0884 2.8997 2.0532 40 1 4.0053 4.4850 1.2465 41 1 1.6943 4.0290 0.5316 42 1 1.8269 3.8407 2.2974 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251663176.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:15 Heat of formation + Delta-G solvation = -24.953527 kcal Electronic energy + Delta-G solvation = -22165.925235 eV Core-core repulsion = 19110.369401 eV Total energy + Delta-G solvation = -3055.555835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.31935 -38.14660 -35.38314 -33.68205 -32.61123 -30.61437 -29.97490 -29.38240 -27.39072 -25.48169 -23.41203 -22.91556 -21.66188 -21.12128 -20.07325 -19.37441 -16.62638 -15.99018 -15.94179 -15.73203 -14.65982 -14.38275 -14.35596 -14.12706 -13.90280 -13.60129 -13.43506 -12.99497 -12.77891 -12.51045 -12.17307 -11.94838 -11.66747 -11.51603 -11.22150 -11.02865 -10.94278 -10.83987 -10.68239 -10.62544 -10.35246 -10.20140 -10.05730 -9.70702 -9.39284 -9.00670 -8.61179 -8.03036 -7.66791 -7.31223 -6.17017 -4.20562 2.30493 2.33054 3.25161 3.30132 3.33100 4.16529 4.29628 4.62151 4.87605 5.15806 5.20749 5.25791 5.38824 5.65133 5.66555 5.69395 5.75779 5.78732 5.82040 5.88043 5.90185 6.03962 6.09846 6.16881 6.20464 6.28934 6.35389 6.44486 6.52036 6.53654 6.64438 6.76606 6.89426 6.98563 7.25993 7.33516 7.39605 7.62508 7.68841 7.72473 7.79638 8.02797 8.09456 8.43299 8.90125 9.43315 10.89672 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014110 B = 0.007392 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.909467 B = 3786.817433 C = 5211.722901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.096 3.904 4 H 0.060 0.940 5 C 0.024 3.976 6 N -0.531 5.531 7 C 0.235 3.765 8 H 0.039 0.961 9 C -0.502 4.502 10 H 0.065 0.935 11 C 0.068 3.932 12 N -0.884 5.884 13 Si 0.896 3.104 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.023 4.023 18 C -0.103 4.103 19 C -0.136 4.136 20 C -0.152 4.152 21 C -0.131 4.131 22 C -0.115 4.115 23 C 0.035 3.965 24 C 0.064 3.936 25 O -0.389 6.389 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.029 0.971 33 H 0.264 0.736 34 H 0.118 0.882 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.030 0.970 40 H 0.096 0.904 41 H 0.051 0.949 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.740 -4.900 -3.069 10.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C 0.038 3.962 4 H 0.078 0.922 5 C -0.105 4.105 6 N -0.256 5.256 7 C 0.130 3.870 8 H 0.057 0.943 9 C -0.540 4.540 10 H 0.083 0.917 11 C -0.136 4.136 12 N -0.521 5.521 13 Si 0.724 3.276 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.200 1.200 17 C -0.024 4.024 18 C -0.121 4.121 19 C -0.154 4.154 20 C -0.171 4.171 21 C -0.149 4.149 22 C -0.134 4.134 23 C -0.093 4.093 24 C -0.013 4.013 25 O -0.308 6.308 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.136 0.864 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.135 0.865 39 H 0.048 0.952 40 H 0.114 0.886 41 H 0.069 0.931 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.865 -4.755 -3.204 10.557 hybrid contribution 1.297 0.678 0.354 1.506 sum -7.568 -4.077 -2.849 9.056 Atomic orbital electron populations 1.21688 0.95545 1.00976 1.02116 1.21520 0.96320 0.95059 1.02484 1.22147 0.93924 0.93078 0.87030 0.92213 1.22709 0.94553 0.92082 1.01179 1.62319 1.16330 1.14211 1.32775 1.18470 0.81683 0.97132 0.89747 0.94299 1.20865 0.99994 0.90723 1.42404 0.91722 1.24980 0.96963 0.97472 0.94194 1.69898 1.10566 1.32113 1.39532 0.86583 0.77971 0.84525 0.78565 1.20085 1.21262 1.20023 1.20447 0.93302 0.91239 0.97406 1.20952 1.00033 0.99536 0.91578 1.21001 0.98310 0.98911 0.97213 1.20812 0.98172 1.00506 0.97565 1.20960 0.99807 1.00940 0.93225 1.21089 0.97875 0.97422 0.96995 1.22497 0.93720 1.02146 0.90942 1.22715 0.94494 0.83043 1.01044 1.87873 1.76995 1.26930 1.39048 0.93187 0.92106 0.93046 0.90811 0.91448 0.90498 0.95241 0.92580 0.86355 0.87658 0.87817 0.87649 0.86547 0.95179 0.88554 0.93070 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.81 37.16 0.36 -1.32 16 2 C -0.12 -1.54 5.64 -26.73 -0.15 -1.69 16 3 C 0.10 1.54 2.80 -26.68 -0.07 1.46 16 4 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 5 C 0.02 0.44 4.65 -3.71 -0.02 0.42 16 6 N -0.53 -10.99 4.07 -229.12 -0.93 -11.93 16 7 C 0.24 5.59 1.75 -70.02 -0.12 5.47 16 8 H 0.04 1.06 7.16 -51.93 -0.37 0.68 16 9 C -0.50 -12.94 6.84 -34.44 -0.24 -13.18 16 10 H 0.06 1.68 7.68 -52.49 -0.40 1.28 16 11 C 0.07 1.79 5.45 -17.82 -0.10 1.69 16 12 N -0.88 -24.27 12.83 55.43 0.71 -23.56 16 13 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 C -0.02 -0.51 3.58 -104.63 -0.37 -0.88 16 18 C -0.10 -2.11 8.78 -39.59 -0.35 -2.46 16 19 C -0.14 -2.47 10.05 -39.58 -0.40 -2.87 16 20 C -0.15 -2.68 10.05 -39.58 -0.40 -3.08 16 21 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16 22 C -0.12 -2.50 9.67 -39.58 -0.38 -2.88 16 23 C 0.04 0.69 5.36 -3.72 -0.02 0.67 16 24 C 0.06 1.05 7.01 37.21 0.26 1.31 16 25 O -0.39 -6.63 10.02 -35.23 -0.35 -6.98 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.75 7.83 -51.93 -0.41 0.34 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.43 6.70 -51.93 -0.35 1.09 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 34 H 0.12 2.43 7.90 -52.49 -0.41 2.02 16 35 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.10 1.52 8.06 -52.48 -0.42 1.10 16 37 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 38 H 0.12 2.65 7.99 -52.49 -0.42 2.23 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 2.00 6.80 -51.93 -0.35 1.64 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -27.31 337.10 -9.83 -37.14 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.93 Total: 4.74 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -2.39 Total: -20.19 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: -0.22 Total: -35.49 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.35 Total: -6.98 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.31 -9.83 -37.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251663176.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.185 kcal (2) G-P(sol) polarization free energy of solvation -27.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds