Wall clock time and date at job start Mon Mar 30 2020 07:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47152 * 2 1 4 4 H 1.09000 * 109.54143 * 305.10591 * 3 2 1 5 5 C 1.53095 * 109.50677 * 184.99669 * 3 2 1 6 6 N 1.47015 * 109.25803 * 183.21684 * 5 3 2 7 7 C 1.46905 * 110.99980 * 182.39497 * 6 5 3 8 8 H 1.09000 * 109.46811 * 300.53668 * 7 6 5 9 9 C 1.50701 * 109.46729 * 180.53970 * 7 6 5 10 10 H 1.07997 * 120.00554 * 329.62713 * 9 7 6 11 11 C 1.37881 * 119.99567 * 149.35221 * 9 7 6 12 12 N 1.31513 * 120.00258 * 354.58109 * 11 9 7 13 13 Si 1.86804 * 119.99888 * 174.57864 * 11 9 7 14 14 H 1.48504 * 109.46832 * 60.00379 * 13 11 9 15 15 H 1.48491 * 109.47071 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47143 * 300.00517 * 13 11 9 17 17 C 1.50694 * 109.47036 * 60.54166 * 7 6 5 18 18 C 1.38231 * 120.00594 * 45.86361 * 17 7 6 19 19 C 1.38230 * 120.00620 * 179.78681 * 18 17 7 20 20 C 1.38242 * 119.99476 * 0.46559 * 19 18 17 21 21 C 1.38232 * 120.00159 * 359.76602 * 20 19 18 22 22 C 1.38237 * 119.99923 * 0.02579 * 21 20 19 23 23 C 1.47005 * 110.75169 * 58.61658 * 6 5 3 24 24 C 1.53098 * 109.25910 * 301.38259 * 23 6 5 25 25 O 1.43014 * 109.25818 * 56.85210 * 24 23 6 26 26 H 1.08997 * 109.47020 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47059 * 299.99818 * 1 2 3 28 28 H 1.09003 * 109.46794 * 60.00455 * 1 2 3 29 29 H 1.09001 * 109.47743 * 240.00059 * 2 1 3 30 30 H 1.09001 * 109.47227 * 119.99843 * 2 1 3 31 31 H 1.09005 * 109.50842 * 63.27999 * 5 3 2 32 32 H 1.09000 * 109.50897 * 303.15024 * 5 3 2 33 33 H 0.96995 * 120.00230 * 179.97438 * 12 11 9 34 34 H 1.08002 * 119.99878 * 359.97438 * 18 17 7 35 35 H 1.07995 * 120.00562 * 180.25152 * 19 18 17 36 36 H 1.08007 * 119.99687 * 179.78771 * 20 19 18 37 37 H 1.08004 * 120.00019 * 179.97438 * 21 20 19 38 38 H 1.07998 * 119.99464 * 179.97438 * 22 21 20 39 39 H 1.09004 * 109.50836 * 61.32212 * 23 6 5 40 40 H 1.09006 * 109.50997 * 181.44869 * 23 6 5 41 41 H 1.08995 * 109.50995 * 296.91404 * 24 23 6 42 42 H 1.09003 * 109.50579 * 176.78142 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6046 1.9832 -0.8404 5 6 3.5658 1.4453 -0.1257 6 7 4.0563 2.8290 -0.0476 7 6 5.5141 2.8814 -0.2212 8 1 5.9941 2.2878 0.5568 9 6 5.9806 4.3110 -0.1220 10 1 5.3294 5.1144 -0.4332 11 6 7.2367 4.5935 0.3714 12 7 7.9863 3.6268 0.8542 13 14 7.8738 6.3495 0.3539 14 1 6.9705 7.2117 1.1575 15 1 9.2395 6.3863 0.9358 16 1 7.9176 6.8463 -1.0448 17 6 5.8792 2.3266 -1.5738 18 6 5.1718 2.7175 -2.6952 19 6 5.5096 2.2119 -3.9366 20 6 6.5486 1.3078 -4.0553 21 6 7.2529 0.9131 -2.9332 22 6 6.9178 1.4221 -1.6924 23 6 3.6539 3.4535 1.2209 24 6 2.1272 3.4306 1.3331 25 8 1.6664 2.0811 1.2239 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8530 1.0108 -1.0833 32 1 3.9989 0.8594 0.6850 33 1 8.8701 3.8255 1.2009 34 1 4.3572 3.4204 -2.6019 35 1 4.9595 2.5205 -4.8133 36 1 6.8103 0.9101 -5.0248 37 1 8.0644 0.2064 -3.0259 38 1 7.4679 1.1134 -0.8158 39 1 4.0884 2.8997 2.0532 40 1 4.0053 4.4850 1.2465 41 1 1.6943 4.0290 0.5316 42 1 1.8269 3.8407 2.2974 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251663176.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:14 Heat of formation + Delta-G solvation = -39.852330 kcal Electronic energy + Delta-G solvation = -22166.571296 eV Core-core repulsion = 19110.369401 eV Total energy + Delta-G solvation = -3056.201895 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.84197 -39.65107 -36.98972 -34.87147 -34.53381 -32.24378 -31.52072 -30.72942 -29.07373 -27.12911 -24.86999 -24.53109 -23.20012 -22.42602 -21.55100 -21.01940 -18.54495 -17.46522 -17.38499 -17.30533 -16.40696 -15.99813 -15.78573 -15.69913 -15.40100 -15.07933 -14.65898 -14.52829 -14.07619 -14.05511 -13.79505 -13.64928 -13.14723 -12.87763 -12.85730 -12.69661 -12.56110 -12.27323 -12.09960 -11.94836 -11.91765 -11.82832 -11.64651 -11.18879 -11.15387 -10.68396 -10.41652 -9.58115 -9.29278 -9.07372 -8.17870 -6.28055 0.73965 0.78355 1.38784 1.40651 1.47440 2.36725 2.84795 3.00726 3.21147 3.31225 3.88151 4.07916 4.18841 4.23441 4.26576 4.30956 4.33237 4.43520 4.45340 4.53710 4.61036 4.67864 4.70054 4.84555 4.89227 4.95168 5.01512 5.06168 5.12497 5.13328 5.23697 5.30910 5.40780 5.45305 5.48092 5.64393 5.79961 5.80636 6.01739 6.06667 6.25297 6.30200 6.42565 6.64252 6.88392 7.38829 8.87682 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014110 B = 0.007392 C = 0.005371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.909467 B = 3786.817433 C = 5211.722901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C 0.100 3.900 4 H 0.067 0.933 5 C 0.029 3.971 6 N -0.529 5.529 7 C 0.244 3.756 8 H -0.010 1.010 9 C -0.507 4.507 10 H 0.059 0.941 11 C 0.020 3.980 12 N -0.917 5.917 13 Si 0.954 3.046 14 H -0.266 1.266 15 H -0.287 1.287 16 H -0.273 1.273 17 C -0.046 4.046 18 C -0.114 4.114 19 C -0.128 4.128 20 C -0.142 4.142 21 C -0.130 4.130 22 C -0.141 4.141 23 C 0.036 3.964 24 C 0.073 3.927 25 O -0.394 6.394 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.007 0.993 33 H 0.262 0.738 34 H 0.114 0.886 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.131 0.869 38 H 0.088 0.912 39 H 0.004 0.996 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.227 -4.952 -5.492 12.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C 0.043 3.957 4 H 0.085 0.915 5 C -0.099 4.099 6 N -0.253 5.253 7 C 0.138 3.862 8 H 0.008 0.992 9 C -0.545 4.545 10 H 0.077 0.923 11 C -0.180 4.180 12 N -0.555 5.555 13 Si 0.779 3.221 14 H -0.191 1.191 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.047 4.047 18 C -0.132 4.132 19 C -0.146 4.146 20 C -0.159 4.159 21 C -0.148 4.148 22 C -0.160 4.160 23 C -0.093 4.093 24 C -0.004 4.004 25 O -0.314 6.314 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.025 0.975 33 H 0.071 0.929 34 H 0.132 0.868 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.149 0.851 38 H 0.106 0.894 39 H 0.022 0.978 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.376 -4.808 -5.627 12.745 hybrid contribution 1.753 0.618 1.058 2.139 sum -8.623 -4.189 -4.568 10.620 Atomic orbital electron populations 1.21644 0.93747 1.02292 1.02050 1.21546 0.97800 0.92910 1.02862 1.22241 0.91573 0.95013 0.86923 0.91522 1.22732 0.96613 0.90406 1.00178 1.62335 1.14403 1.15597 1.32983 1.18189 0.82965 0.95444 0.89648 0.99187 1.21064 0.99954 0.91634 1.41843 0.92255 1.25699 0.97288 1.00888 0.94164 1.70046 1.10718 1.33836 1.40898 0.85670 0.77410 0.80461 0.78535 1.19110 1.21216 1.19813 1.20314 0.94544 0.92737 0.97089 1.20966 1.00047 1.00040 0.92149 1.21393 0.98182 0.97821 0.97170 1.21273 0.96780 0.99181 0.98705 1.21253 1.00421 1.00774 0.92345 1.21035 0.98371 0.98882 0.97680 1.22526 0.96450 1.00639 0.89685 1.22724 0.91428 0.83226 1.03016 1.87883 1.76636 1.27187 1.39654 0.91229 0.93017 0.92227 0.89452 0.92134 0.90602 0.97495 0.92901 0.86788 0.84003 0.83611 0.85121 0.89354 0.97793 0.90033 0.91845 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.81 71.98 0.71 -2.18 16 2 C -0.11 -2.83 5.64 30.60 0.17 -2.66 16 3 C 0.10 3.14 2.80 30.63 0.09 3.22 16 4 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 5 C 0.03 1.12 4.65 86.31 0.40 1.53 16 6 N -0.53 -22.77 4.07 -878.79 -3.58 -26.35 16 7 C 0.24 12.29 1.75 43.42 0.08 12.36 16 8 H -0.01 -0.57 7.16 -2.39 -0.02 -0.59 16 9 C -0.51 -27.23 6.84 25.60 0.18 -27.06 16 10 H 0.06 3.18 7.68 -2.91 -0.02 3.16 16 11 C 0.02 1.09 5.45 84.66 0.46 1.55 16 12 N -0.92 -53.00 12.83 21.45 0.28 -52.72 16 13 Si 0.95 43.43 29.54 68.60 2.03 45.46 16 14 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 15 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 17 C -0.05 -2.11 3.58 -19.87 -0.07 -2.18 16 18 C -0.11 -4.59 8.78 22.27 0.20 -4.39 16 19 C -0.13 -4.23 10.05 22.27 0.22 -4.00 16 20 C -0.14 -4.45 10.05 22.27 0.22 -4.23 16 21 C -0.13 -4.70 10.05 22.27 0.22 -4.48 16 22 C -0.14 -6.32 9.67 22.27 0.22 -6.10 16 23 C 0.04 1.46 5.36 86.32 0.46 1.92 16 24 C 0.07 2.33 7.01 72.01 0.50 2.84 16 25 O -0.39 -13.10 10.02 -148.98 -1.49 -14.60 16 26 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.05 1.16 7.83 -2.39 -0.02 1.14 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 31 H 0.08 2.89 6.70 -2.38 -0.02 2.88 16 32 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 34 H 0.11 4.62 7.90 -2.91 -0.02 4.60 16 35 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 36 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 37 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 38 H 0.09 4.35 7.99 -2.91 -0.02 4.33 16 39 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 40 H 0.08 3.54 6.80 -2.38 -0.02 3.53 16 41 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -62.09 337.10 2.25 -59.83 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.97 Total: 22.24 kcal Atomic # 6 Polarization: -37.91 SS G_CDS: 4.06 Total: -33.85 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -3.31 Total: -79.07 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -1.49 Total: -14.60 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -62.09 2.25 -59.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251663176.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.978 kcal (2) G-P(sol) polarization free energy of solvation -62.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds