Wall clock time and date at job start Mon Mar 30 2020 07:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47550 * 2 1 4 4 H 1.09000 * 109.50331 * 55.08691 * 3 2 1 5 5 C 1.53092 * 109.54596 * 175.19716 * 3 2 1 6 6 N 1.47011 * 109.25929 * 176.80531 * 5 3 2 7 7 C 1.46902 * 110.99950 * 177.60868 * 6 5 3 8 8 H 1.08999 * 109.47216 * 59.68590 * 7 6 5 9 9 C 1.50698 * 109.47170 * 299.67956 * 7 6 5 10 10 H 1.08004 * 119.99855 * 125.49054 * 9 7 6 11 11 C 1.37879 * 120.00477 * 305.49370 * 9 7 6 12 12 N 1.31516 * 119.99550 * 10.60114 * 11 9 7 13 13 Si 1.86801 * 120.00182 * 190.60203 * 11 9 7 14 14 H 1.48497 * 109.47221 * 89.99945 * 13 11 9 15 15 H 1.48500 * 109.46718 * 210.00044 * 13 11 9 16 16 H 1.48496 * 109.47097 * 329.99664 * 13 11 9 17 17 C 1.50702 * 109.47095 * 179.68424 * 7 6 5 18 18 C 1.38236 * 120.00263 * 34.46270 * 17 7 6 19 19 C 1.38235 * 120.00289 * 179.72655 * 18 17 7 20 20 C 1.38237 * 119.99834 * 0.25480 * 19 18 17 21 21 C 1.38241 * 119.99980 * 0.02562 * 20 19 18 22 22 C 1.38238 * 119.99742 * 214.69846 * 17 7 6 23 23 C 1.47016 * 110.75511 * 301.38536 * 6 5 3 24 24 C 1.53095 * 109.25705 * 58.61432 * 23 6 5 25 25 O 1.43016 * 109.26075 * 303.15331 * 24 23 6 26 26 H 1.09001 * 109.46675 * 299.99835 * 1 2 3 27 27 H 1.09000 * 109.46872 * 59.99306 * 1 2 3 28 28 H 1.09001 * 109.47208 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46675 * 240.00165 * 2 1 3 30 30 H 1.08996 * 109.47294 * 120.00443 * 2 1 3 31 31 H 1.09006 * 109.50908 * 56.87240 * 5 3 2 32 32 H 1.09004 * 109.50735 * 296.74675 * 5 3 2 33 33 H 0.97003 * 119.99523 * 180.02562 * 12 11 9 34 34 H 1.08004 * 119.99776 * 0.02562 * 18 17 7 35 35 H 1.07994 * 119.99772 * 180.27915 * 19 18 17 36 36 H 1.07993 * 120.00220 * 179.97438 * 20 19 18 37 37 H 1.07996 * 120.00222 * 179.97438 * 21 20 19 38 38 H 1.07994 * 120.00258 * 0.02562 * 22 17 7 39 39 H 1.08996 * 109.50518 * 178.54921 * 23 6 5 40 40 H 1.08999 * 109.50135 * 298.68055 * 23 6 5 41 41 H 1.09002 * 109.50323 * 63.08565 * 24 23 6 42 42 H 1.08998 * 109.50704 * 183.16994 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6070 1.9816 0.8425 5 6 3.5663 1.4460 0.1208 6 7 4.0556 2.8301 0.0432 7 6 5.5139 2.8832 0.2120 8 1 5.9920 2.2942 -0.5707 9 6 5.8842 2.3215 1.5605 10 1 6.6022 1.5179 1.6320 11 6 5.3065 2.8334 2.7029 12 7 4.2872 3.6594 2.6108 13 14 5.9714 2.3538 4.3814 14 1 7.0308 3.3122 4.7865 15 1 4.8699 2.3835 5.3770 16 1 6.5417 0.9843 4.3150 17 6 5.9787 4.3137 0.1190 18 6 5.1802 5.3328 0.6035 19 6 5.6090 6.6445 0.5233 20 6 6.8340 6.9376 -0.0463 21 6 7.6300 5.9190 -0.5361 22 6 7.2014 4.6072 -0.4553 23 6 3.6487 3.4563 -1.2232 24 6 2.1217 3.4326 -1.3305 25 8 1.6621 2.0827 -1.2217 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.9971 0.8615 -0.6922 32 1 3.8567 1.0102 1.0768 33 1 3.8809 4.0198 3.4146 34 1 4.2234 5.1038 1.0491 35 1 4.9871 7.4402 0.9059 36 1 7.1688 7.9624 -0.1094 37 1 8.5868 6.1480 -0.9814 38 1 7.8233 3.8115 -0.8377 39 1 3.9994 4.4880 -1.2482 40 1 4.0809 2.9039 -2.0576 41 1 1.6911 4.0296 -0.5266 42 1 1.8180 3.8448 -2.2928 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251663179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:17 Heat of formation + Delta-G solvation = -10.590646 kcal Electronic energy + Delta-G solvation = -22558.805640 eV Core-core repulsion = 19503.872626 eV Total energy + Delta-G solvation = -3054.933013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.15888 -38.00551 -35.24643 -33.50263 -32.32046 -30.46515 -29.82036 -29.20764 -27.28399 -25.30571 -23.50565 -22.43021 -21.43120 -21.09690 -19.89969 -19.34598 -16.46194 -15.89792 -15.76602 -15.35255 -14.82201 -14.23966 -14.14498 -13.88407 -13.72907 -13.42953 -13.22846 -12.85327 -12.51173 -12.31181 -12.04533 -12.03315 -11.61327 -11.43611 -11.03710 -10.96274 -10.75165 -10.63409 -10.51027 -10.42533 -10.39320 -10.07571 -9.85124 -9.49354 -9.22770 -8.79739 -8.50094 -7.87492 -7.46808 -6.89217 -5.95704 -4.14172 2.40704 2.50856 3.26806 3.34053 3.37042 4.36892 4.37484 4.81390 4.99814 5.25037 5.44499 5.47521 5.59550 5.75449 5.81007 5.85998 5.91265 5.93705 5.96251 6.02009 6.12237 6.22786 6.28848 6.34647 6.38044 6.39721 6.54247 6.57894 6.64289 6.68680 6.79853 6.93047 6.98319 7.09506 7.21748 7.42795 7.60486 7.74861 7.86162 7.90645 8.05996 8.20903 8.39130 8.56091 8.94551 9.51726 10.97223 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.015029 B = 0.007976 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.659283 B = 3509.685386 C = 4743.446053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.095 3.905 4 H 0.065 0.935 5 C 0.051 3.949 6 N -0.483 5.483 7 C 0.248 3.752 8 H -0.003 1.003 9 C -0.530 4.530 10 H 0.058 0.942 11 C 0.090 3.910 12 N -0.823 5.823 13 Si 0.878 3.122 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.275 1.275 17 C -0.031 4.031 18 C -0.075 4.075 19 C -0.147 4.147 20 C -0.152 4.152 21 C -0.141 4.141 22 C -0.136 4.136 23 C 0.010 3.990 24 C 0.071 3.929 25 O -0.394 6.394 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.011 0.989 32 H 0.093 0.907 33 H 0.256 0.744 34 H 0.164 0.836 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.016 0.984 41 H 0.054 0.946 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.519 -0.139 -4.905 6.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C 0.037 3.963 4 H 0.083 0.917 5 C -0.077 4.077 6 N -0.208 5.208 7 C 0.142 3.858 8 H 0.015 0.985 9 C -0.568 4.568 10 H 0.076 0.924 11 C -0.119 4.119 12 N -0.455 5.455 13 Si 0.706 3.294 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.032 4.032 18 C -0.093 4.093 19 C -0.165 4.165 20 C -0.170 4.170 21 C -0.159 4.159 22 C -0.155 4.155 23 C -0.119 4.119 24 C -0.006 4.006 25 O -0.313 6.313 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.029 0.971 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.181 0.819 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.096 0.904 40 H 0.034 0.966 41 H 0.072 0.928 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.989 0.140 -4.546 6.049 hybrid contribution 1.215 -0.327 0.626 1.405 sum -2.774 -0.187 -3.920 4.805 Atomic orbital electron populations 1.21688 0.95844 1.00688 1.02044 1.21501 0.96035 0.95454 1.02231 1.22220 0.94844 0.92544 0.86698 0.91737 1.22369 0.92989 0.90918 1.01430 1.62386 1.14874 1.15313 1.28194 1.18250 0.83572 0.88501 0.95467 0.98518 1.20805 1.26227 1.20007 0.89741 0.92382 1.24870 0.93902 0.94771 0.98335 1.70044 1.18887 1.29057 1.27537 0.86834 0.78914 0.79010 0.84670 1.20685 1.21214 1.20014 1.20316 0.93089 0.96879 0.92944 1.21872 1.02601 0.90104 0.94723 1.21188 0.96448 0.97345 1.01553 1.20815 0.95953 0.97746 1.02488 1.20778 0.99106 0.93334 1.02682 1.20905 0.97163 0.95542 1.01891 1.22822 0.95516 1.00901 0.92616 1.22517 0.93984 0.83486 1.00600 1.87824 1.77047 1.26589 1.39861 0.93025 0.92292 0.93429 0.91841 0.90775 0.97070 0.88860 0.93384 0.81924 0.87963 0.88206 0.88005 0.87842 0.90364 0.96610 0.92752 0.90218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.81 37.16 0.36 -1.57 16 2 C -0.11 -1.74 5.65 -26.73 -0.15 -1.89 16 3 C 0.09 1.74 2.80 -26.68 -0.07 1.66 16 4 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 5 C 0.05 1.07 4.70 -3.72 -0.02 1.06 16 6 N -0.48 -10.62 2.54 -229.12 -0.58 -11.20 16 7 C 0.25 5.87 1.95 -70.02 -0.14 5.73 16 8 H 0.00 -0.07 8.05 -51.93 -0.42 -0.49 16 9 C -0.53 -13.54 7.31 -34.44 -0.25 -13.79 16 10 H 0.06 1.51 7.84 -52.48 -0.41 1.10 16 11 C 0.09 2.26 5.14 -17.82 -0.09 2.17 16 12 N -0.82 -20.76 9.14 55.43 0.51 -20.26 16 13 Si 0.88 20.16 29.55 -169.99 -5.02 15.14 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 C -0.03 -0.71 3.80 -104.62 -0.40 -1.11 16 18 C -0.07 -1.67 6.55 -39.58 -0.26 -1.93 16 19 C -0.15 -2.93 10.05 -39.58 -0.40 -3.33 16 20 C -0.15 -2.82 10.05 -39.58 -0.40 -3.22 16 21 C -0.14 -2.66 10.05 -39.58 -0.40 -3.06 16 22 C -0.14 -2.85 9.68 -39.58 -0.38 -3.24 16 23 C 0.01 0.20 5.18 -3.71 -0.02 0.18 16 24 C 0.07 1.26 7.01 37.21 0.26 1.52 16 25 O -0.39 -7.31 10.01 -35.23 -0.35 -7.66 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.82 7.82 -51.93 -0.41 0.41 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 2.11 6.99 -51.93 -0.36 1.75 16 33 H 0.26 6.33 8.31 -40.82 -0.34 5.99 16 34 H 0.16 3.92 5.55 -52.48 -0.29 3.63 16 35 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 37 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 39 H 0.08 1.57 5.80 -51.93 -0.30 1.26 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 328.18 15.07 4.95 4.95 Total: -1.00 -25.98 328.18 -9.68 -35.66 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -6.82 Total: 4.19 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -2.35 Total: -20.81 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: -0.08 Total: -31.46 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.35 Total: -7.66 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -25.98 -9.68 -35.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251663179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.064 kcal (2) G-P(sol) polarization free energy of solvation -25.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds