Wall clock time and date at job start Mon Mar 30 2020 07:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47431 * 2 1 4 4 H 1.09002 * 109.50633 * 59.64385 * 3 2 1 5 5 C 1.53104 * 109.54320 * 299.53543 * 3 2 1 6 6 O 1.43016 * 109.25510 * 183.19075 * 5 3 2 7 7 C 1.43015 * 113.73780 * 58.67651 * 6 5 3 8 8 C 1.53098 * 109.25687 * 301.32228 * 7 6 5 9 9 N 1.47013 * 109.50929 * 179.72991 * 3 2 1 10 10 C 1.46901 * 110.99907 * 302.37696 * 9 3 2 11 11 H 1.09005 * 109.46843 * 318.52113 * 10 9 3 12 12 C 1.50703 * 109.46871 * 198.52351 * 10 9 3 13 13 H 1.07998 * 119.99946 * 303.26495 * 12 10 9 14 14 C 1.37885 * 119.99841 * 123.54134 * 12 10 9 15 15 N 1.31508 * 119.99894 * 171.35196 * 14 12 10 16 16 Si 1.86796 * 120.00069 * 351.34953 * 14 12 10 17 17 H 1.48504 * 109.47003 * 90.87789 * 16 14 12 18 18 H 1.48499 * 109.47303 * 210.87655 * 16 14 12 19 19 H 1.48503 * 109.47314 * 330.87962 * 16 14 12 20 20 C 1.50696 * 109.47330 * 78.52510 * 10 9 3 21 21 C 1.38231 * 120.00189 * 39.11679 * 20 10 9 22 22 C 1.38242 * 119.99702 * 179.76567 * 21 20 10 23 23 C 1.38231 * 120.00219 * 0.50965 * 22 21 20 24 24 C 1.38241 * 119.99711 * 359.74515 * 23 22 21 25 25 C 1.38230 * 120.00385 * 359.97438 * 24 23 22 26 26 H 1.09005 * 109.47109 * 66.09921 * 1 2 3 27 27 H 1.09003 * 109.47230 * 186.09467 * 1 2 3 28 28 H 1.08997 * 109.47062 * 306.10223 * 1 2 3 29 29 H 1.09003 * 109.47251 * 239.99700 * 2 1 3 30 30 H 1.09002 * 109.47002 * 120.00480 * 2 1 3 31 31 H 1.08998 * 109.50511 * 303.13048 * 5 3 2 32 32 H 1.09003 * 109.50224 * 63.21368 * 5 3 2 33 33 H 1.08996 * 109.51064 * 61.25463 * 7 6 5 34 34 H 1.08995 * 109.50659 * 181.34821 * 7 6 5 35 35 H 1.09004 * 109.50929 * 296.91767 * 8 7 6 36 36 H 1.08999 * 109.51176 * 176.78442 * 8 7 6 37 37 H 0.97001 * 120.00055 * 179.97438 * 15 14 12 38 38 H 1.07996 * 119.99883 * 359.97438 * 21 20 10 39 39 H 1.07999 * 119.99574 * 180.23160 * 22 21 20 40 40 H 1.07999 * 120.00229 * 179.72579 * 23 22 21 41 41 H 1.08000 * 119.99640 * 179.97438 * 24 23 22 42 42 H 1.07995 * 120.00106 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6719 1.9587 0.8866 5 6 1.5402 2.1624 -1.2553 6 8 2.0810 3.4860 -1.2867 7 6 3.5107 3.5241 -1.2821 8 6 4.0305 2.8179 -0.0270 9 7 3.5102 1.4433 0.0065 10 6 4.0319 0.7111 1.1683 11 1 3.4392 0.9576 2.0492 12 6 5.4684 1.1010 1.4040 13 1 6.1971 0.9797 0.6163 14 6 5.8534 1.6073 2.6274 15 7 7.1288 1.7878 2.8924 16 14 4.5635 2.0368 3.9083 17 1 4.3143 0.8568 4.7749 18 1 5.0485 3.1678 4.7395 19 1 3.3019 2.4271 3.2290 20 6 3.9501 -0.7707 0.9063 21 6 4.2373 -1.2671 -0.3515 22 6 4.1669 -2.6269 -0.5904 23 6 3.7992 -3.4891 0.4255 24 6 3.5070 -2.9921 1.6819 25 6 3.5829 -1.6330 1.9225 26 1 -0.3633 0.4164 -0.9396 27 1 -0.3634 -1.0219 0.1091 28 1 -0.3633 0.6055 0.8303 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8635 1.6159 -2.1413 32 1 0.4516 2.2136 -1.2363 33 1 3.8912 3.0172 -2.1688 34 1 3.8472 4.5608 -1.2828 35 1 3.6941 3.3561 0.8592 36 1 5.1200 2.7943 -0.0475 37 1 7.3997 2.1443 3.7529 38 1 4.5198 -0.5930 -1.1465 39 1 4.3949 -3.0151 -1.5721 40 1 3.7400 -4.5510 0.2377 41 1 3.2193 -3.6657 2.4756 42 1 3.3542 -1.2447 2.9039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251698460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:20 Heat of formation + Delta-G solvation = -11.938560 kcal Electronic energy + Delta-G solvation = -22896.734277 eV Core-core repulsion = 19841.742813 eV Total energy + Delta-G solvation = -3054.991463 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.72165 -38.24489 -35.65594 -33.93567 -32.27978 -31.04844 -30.17431 -29.10556 -27.51766 -25.48701 -24.20859 -22.58383 -21.87830 -21.08718 -20.06406 -19.18451 -17.20437 -16.28867 -15.84663 -15.78770 -14.88679 -14.44279 -14.40998 -14.15264 -14.12754 -13.76905 -13.27068 -12.94488 -12.72661 -12.64044 -12.49328 -12.40932 -12.01281 -11.60797 -11.24108 -11.18956 -11.03332 -10.79780 -10.56309 -10.36705 -10.35476 -10.10477 -10.00899 -9.87131 -9.44768 -9.08120 -8.76385 -8.18574 -7.70949 -7.41423 -6.29951 -4.28047 2.09715 2.16467 3.12439 3.21048 3.23202 4.21118 4.26424 4.44280 4.68177 5.08667 5.25102 5.32871 5.49117 5.53265 5.55644 5.57870 5.66618 5.72917 5.76500 5.83826 5.85380 5.99749 6.05184 6.10560 6.18664 6.24304 6.28231 6.32222 6.44921 6.53481 6.62643 6.72888 6.76112 6.81052 6.92058 7.15242 7.20366 7.29399 7.47119 7.56893 7.75729 7.93402 8.00168 8.43478 8.78952 9.31755 10.81688 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011409 B = 0.011275 C = 0.007162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.565039 B = 2482.710115 C = 3908.365848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.046 3.954 4 H 0.036 0.964 5 C 0.072 3.928 6 O -0.396 6.396 7 C 0.060 3.940 8 C 0.037 3.963 9 N -0.527 5.527 10 C 0.207 3.793 11 H 0.022 0.978 12 C -0.501 4.501 13 H 0.084 0.916 14 C 0.081 3.919 15 N -0.881 5.881 16 Si 0.865 3.135 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.266 1.266 20 C -0.011 4.011 21 C -0.098 4.098 22 C -0.127 4.127 23 C -0.151 4.151 24 C -0.122 4.122 25 C -0.138 4.138 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.029 0.971 36 H 0.109 0.891 37 H 0.267 0.733 38 H 0.123 0.877 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.922 -3.531 -5.786 12.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.063 4.063 4 H 0.054 0.946 5 C -0.005 4.005 6 O -0.314 6.314 7 C -0.016 4.016 8 C -0.091 4.091 9 N -0.252 5.252 10 C 0.101 3.899 11 H 0.040 0.960 12 C -0.539 4.539 13 H 0.102 0.898 14 C -0.124 4.124 15 N -0.517 5.517 16 Si 0.692 3.308 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.191 1.191 20 C -0.013 4.013 21 C -0.116 4.116 22 C -0.145 4.145 23 C -0.169 4.169 24 C -0.140 4.140 25 C -0.157 4.157 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.047 0.953 36 H 0.127 0.873 37 H 0.078 0.922 38 H 0.141 0.859 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.716 -3.516 -6.066 11.982 hybrid contribution -0.594 0.338 1.730 1.860 sum -10.310 -3.178 -4.336 11.628 Atomic orbital electron populations 1.21830 0.96649 1.01235 1.01205 1.21938 0.94446 0.96080 1.03844 1.22318 0.90686 0.96091 0.97223 0.94592 1.22679 0.97606 0.83257 0.96920 1.87890 1.21192 1.27292 1.95064 1.22813 0.80201 1.00497 0.98128 1.22546 1.02950 0.88239 0.95399 1.62428 1.03974 1.14122 1.44713 1.18847 0.96349 0.86966 0.87697 0.96027 1.20753 0.91355 1.42033 0.99770 0.89798 1.25029 0.94975 0.94788 0.97588 1.69884 1.14717 1.43760 1.23384 0.87030 0.82540 0.79019 0.82190 1.19890 1.21007 1.19149 1.20174 0.91772 0.96773 0.92539 1.20917 0.99311 0.94127 0.97290 1.21055 1.01061 0.93993 0.98400 1.20832 1.03579 0.98631 0.93840 1.20887 1.01428 0.95066 0.96638 1.20906 1.02593 0.93395 0.98799 0.93006 0.92903 0.93169 0.91021 0.90174 0.92879 0.89544 0.92907 0.89357 0.95301 0.87296 0.92240 0.85853 0.87355 0.87529 0.87382 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.39 37.16 0.35 -1.62 16 2 C -0.13 -2.01 4.11 -26.73 -0.11 -2.12 16 3 C 0.05 0.82 2.00 -67.60 -0.14 0.68 16 4 H 0.04 0.71 8.12 -51.93 -0.42 0.29 16 5 C 0.07 1.14 5.86 37.21 0.22 1.36 16 6 O -0.40 -6.91 10.83 -35.23 -0.38 -7.29 16 7 C 0.06 1.01 7.01 37.21 0.26 1.27 16 8 C 0.04 0.73 5.04 -3.71 -0.02 0.71 16 9 N -0.53 -10.52 3.69 -221.18 -0.82 -11.34 16 10 C 0.21 4.62 1.55 -70.02 -0.11 4.51 16 11 H 0.02 0.52 4.28 -51.93 -0.22 0.30 16 12 C -0.50 -12.96 6.61 -34.44 -0.23 -13.19 16 13 H 0.08 2.40 8.02 -52.49 -0.42 1.98 16 14 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 15 N -0.88 -25.30 13.96 55.43 0.77 -24.53 16 16 Si 0.86 20.65 27.17 -169.99 -4.62 16.03 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.26 6.52 56.52 0.37 -5.90 16 20 C -0.01 -0.23 2.44 -104.62 -0.26 -0.49 16 21 C -0.10 -1.86 7.69 -39.58 -0.30 -2.16 16 22 C -0.13 -2.11 10.05 -39.58 -0.40 -2.50 16 23 C -0.15 -2.40 10.05 -39.58 -0.40 -2.80 16 24 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16 25 C -0.14 -2.69 8.42 -39.58 -0.33 -3.02 16 26 H 0.05 0.60 6.86 -51.93 -0.36 0.24 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.16 6.99 -51.93 -0.36 0.79 16 30 H 0.08 1.42 4.42 -51.93 -0.23 1.19 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.09 1.19 6.77 -51.93 -0.35 0.83 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.11 2.36 6.54 -51.93 -0.34 2.02 16 37 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.12 2.38 7.69 -52.49 -0.40 1.97 16 39 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.11 2.08 8.04 -52.49 -0.42 1.66 16 LS Contribution 321.17 15.07 4.84 4.84 Total: -1.00 -27.95 321.17 -8.66 -36.61 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.50 Total: 5.41 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -1.96 Total: -19.73 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: -0.04 Total: -35.87 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.38 Total: -7.29 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.62 Total: 16.03 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.95 -8.66 -36.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251698460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.675 kcal (2) G-P(sol) polarization free energy of solvation -27.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds