Wall clock time and date at job start Mon Mar 30 2020 07:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47431 * 2 1 4 4 H 1.09002 * 109.50633 * 59.64385 * 3 2 1 5 5 C 1.53104 * 109.54320 * 299.53543 * 3 2 1 6 6 O 1.43016 * 109.25510 * 183.19075 * 5 3 2 7 7 C 1.43015 * 113.73780 * 58.67651 * 6 5 3 8 8 C 1.53098 * 109.25687 * 301.32228 * 7 6 5 9 9 N 1.47013 * 109.50929 * 179.72991 * 3 2 1 10 10 C 1.46901 * 110.99907 * 302.37696 * 9 3 2 11 11 H 1.09005 * 109.46843 * 318.52113 * 10 9 3 12 12 C 1.50703 * 109.46871 * 198.52351 * 10 9 3 13 13 H 1.07998 * 119.99946 * 303.26495 * 12 10 9 14 14 C 1.37885 * 119.99841 * 123.54134 * 12 10 9 15 15 N 1.31508 * 119.99894 * 171.35196 * 14 12 10 16 16 Si 1.86796 * 120.00069 * 351.34953 * 14 12 10 17 17 H 1.48504 * 109.47003 * 90.87789 * 16 14 12 18 18 H 1.48499 * 109.47303 * 210.87655 * 16 14 12 19 19 H 1.48503 * 109.47314 * 330.87962 * 16 14 12 20 20 C 1.50696 * 109.47330 * 78.52510 * 10 9 3 21 21 C 1.38231 * 120.00189 * 39.11679 * 20 10 9 22 22 C 1.38242 * 119.99702 * 179.76567 * 21 20 10 23 23 C 1.38231 * 120.00219 * 0.50965 * 22 21 20 24 24 C 1.38241 * 119.99711 * 359.74515 * 23 22 21 25 25 C 1.38230 * 120.00385 * 359.97438 * 24 23 22 26 26 H 1.09005 * 109.47109 * 66.09921 * 1 2 3 27 27 H 1.09003 * 109.47230 * 186.09467 * 1 2 3 28 28 H 1.08997 * 109.47062 * 306.10223 * 1 2 3 29 29 H 1.09003 * 109.47251 * 239.99700 * 2 1 3 30 30 H 1.09002 * 109.47002 * 120.00480 * 2 1 3 31 31 H 1.08998 * 109.50511 * 303.13048 * 5 3 2 32 32 H 1.09003 * 109.50224 * 63.21368 * 5 3 2 33 33 H 1.08996 * 109.51064 * 61.25463 * 7 6 5 34 34 H 1.08995 * 109.50659 * 181.34821 * 7 6 5 35 35 H 1.09004 * 109.50929 * 296.91767 * 8 7 6 36 36 H 1.08999 * 109.51176 * 176.78442 * 8 7 6 37 37 H 0.97001 * 120.00055 * 179.97438 * 15 14 12 38 38 H 1.07996 * 119.99883 * 359.97438 * 21 20 10 39 39 H 1.07999 * 119.99574 * 180.23160 * 22 21 20 40 40 H 1.07999 * 120.00229 * 179.72579 * 23 22 21 41 41 H 1.08000 * 119.99640 * 179.97438 * 24 23 22 42 42 H 1.07995 * 120.00106 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6719 1.9587 0.8866 5 6 1.5402 2.1624 -1.2553 6 8 2.0810 3.4860 -1.2867 7 6 3.5107 3.5241 -1.2821 8 6 4.0305 2.8179 -0.0270 9 7 3.5102 1.4433 0.0065 10 6 4.0319 0.7111 1.1683 11 1 3.4392 0.9576 2.0492 12 6 5.4684 1.1010 1.4040 13 1 6.1971 0.9797 0.6163 14 6 5.8534 1.6073 2.6274 15 7 7.1288 1.7878 2.8924 16 14 4.5635 2.0368 3.9083 17 1 4.3143 0.8568 4.7749 18 1 5.0485 3.1678 4.7395 19 1 3.3019 2.4271 3.2290 20 6 3.9501 -0.7707 0.9063 21 6 4.2373 -1.2671 -0.3515 22 6 4.1669 -2.6269 -0.5904 23 6 3.7992 -3.4891 0.4255 24 6 3.5070 -2.9921 1.6819 25 6 3.5829 -1.6330 1.9225 26 1 -0.3633 0.4164 -0.9396 27 1 -0.3634 -1.0219 0.1091 28 1 -0.3633 0.6055 0.8303 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.8635 1.6159 -2.1413 32 1 0.4516 2.2136 -1.2363 33 1 3.8912 3.0172 -2.1688 34 1 3.8472 4.5608 -1.2828 35 1 3.6941 3.3561 0.8592 36 1 5.1200 2.7943 -0.0475 37 1 7.3997 2.1443 3.7529 38 1 4.5198 -0.5930 -1.1465 39 1 4.3949 -3.0151 -1.5721 40 1 3.7400 -4.5510 0.2377 41 1 3.2193 -3.6657 2.4756 42 1 3.3542 -1.2447 2.9039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251698460.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:20 Heat of formation + Delta-G solvation = -28.726702 kcal Electronic energy + Delta-G solvation = -22897.462265 eV Core-core repulsion = 19841.742813 eV Total energy + Delta-G solvation = -3055.719452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.21054 -39.64074 -37.14488 -35.45422 -34.13691 -32.58064 -31.56395 -30.43191 -29.16548 -27.10733 -25.53957 -24.19084 -23.28201 -22.48355 -21.55522 -20.72037 -19.20043 -17.68380 -17.37155 -17.18416 -16.47601 -16.04851 -15.90717 -15.58824 -15.57124 -15.21896 -14.88950 -14.50202 -14.24615 -13.99844 -13.91222 -13.87907 -13.52612 -12.98895 -12.92627 -12.83766 -12.46022 -12.14221 -12.06995 -11.98974 -11.73777 -11.71142 -11.60074 -11.33994 -11.20140 -10.86581 -10.49411 -9.57507 -9.17110 -9.07998 -8.40825 -6.40054 0.69127 0.76472 1.17735 1.21943 1.27699 2.18667 2.78799 2.97490 3.17783 3.20833 3.90264 4.04544 4.13938 4.18351 4.22681 4.29479 4.32165 4.38181 4.46480 4.47159 4.56211 4.60038 4.71328 4.74962 4.86213 4.90207 4.92052 4.96674 5.13286 5.17306 5.22201 5.24938 5.34409 5.36306 5.43922 5.48287 5.77847 5.82499 5.97853 6.05134 6.19007 6.28448 6.38483 6.59022 6.67514 7.22391 8.75130 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011409 B = 0.011275 C = 0.007162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.565039 B = 2482.710115 C = 3908.365848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C 0.045 3.955 4 H 0.013 0.987 5 C 0.074 3.926 6 O -0.403 6.403 7 C 0.070 3.930 8 C 0.038 3.962 9 N -0.525 5.525 10 C 0.214 3.786 11 H 0.005 0.995 12 C -0.489 4.489 13 H 0.045 0.955 14 C 0.033 3.967 15 N -0.929 5.929 16 Si 0.918 3.082 17 H -0.265 1.265 18 H -0.282 1.282 19 H -0.266 1.266 20 C -0.033 4.033 21 C -0.110 4.110 22 C -0.123 4.123 23 C -0.140 4.140 24 C -0.120 4.120 25 C -0.158 4.158 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.115 0.885 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.005 0.995 36 H 0.082 0.918 37 H 0.268 0.732 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.137 0.863 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.339 -5.381 -7.026 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C -0.064 4.064 4 H 0.031 0.969 5 C -0.002 4.002 6 O -0.322 6.322 7 C -0.007 4.007 8 C -0.091 4.091 9 N -0.250 5.250 10 C 0.108 3.892 11 H 0.022 0.978 12 C -0.527 4.527 13 H 0.063 0.937 14 C -0.167 4.167 15 N -0.568 5.568 16 Si 0.744 3.256 17 H -0.190 1.190 18 H -0.208 1.208 19 H -0.191 1.191 20 C -0.034 4.034 21 C -0.128 4.128 22 C -0.141 4.141 23 C -0.158 4.158 24 C -0.138 4.138 25 C -0.177 4.177 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.132 0.868 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.023 0.977 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.130 0.870 39 H 0.156 0.844 40 H 0.163 0.837 41 H 0.155 0.845 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.156 -5.374 -7.317 15.172 hybrid contribution 0.151 0.815 2.016 2.179 sum -12.006 -4.559 -5.301 13.893 Atomic orbital electron populations 1.21794 0.94008 1.02311 1.02215 1.21846 0.96637 0.94241 1.02911 1.22454 0.88743 0.97695 0.97541 0.96876 1.22826 0.99076 0.82385 0.95927 1.87886 1.21115 1.28310 1.94920 1.22774 0.80120 1.01412 0.96394 1.22502 1.01458 0.88652 0.96461 1.62407 1.05836 1.13662 1.43052 1.18655 0.93609 0.88979 0.87979 0.97764 1.20809 0.92655 1.40911 0.98374 0.93720 1.25631 0.96356 0.95173 0.99527 1.69999 1.16466 1.46193 1.24153 0.86167 0.80308 0.78992 0.80100 1.18984 1.20751 1.19121 1.19990 0.94175 0.95380 0.93903 1.20887 1.00104 0.95460 0.96345 1.21385 0.99736 0.92814 1.00141 1.21279 1.01262 1.00452 0.92831 1.21220 1.00315 0.94129 0.98107 1.20995 1.03712 0.94816 0.98141 0.91039 0.91583 0.93352 0.91000 0.92060 0.91715 0.86765 0.91691 0.87276 0.97708 0.90002 0.92259 0.87030 0.84362 0.83705 0.84546 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.39 71.98 0.68 -2.70 16 2 C -0.12 -3.63 4.11 30.59 0.13 -3.50 16 3 C 0.04 1.56 2.00 44.93 0.09 1.65 16 4 H 0.01 0.52 8.12 -2.39 -0.02 0.50 16 5 C 0.07 2.18 5.86 72.02 0.42 2.61 16 6 O -0.40 -13.39 10.83 -148.98 -1.61 -15.01 16 7 C 0.07 2.28 7.01 72.01 0.50 2.79 16 8 C 0.04 1.56 5.04 86.31 0.43 1.99 16 9 N -0.52 -21.42 3.69 -853.67 -3.15 -24.58 16 10 C 0.21 9.90 1.55 43.42 0.07 9.97 16 11 H 0.00 0.23 4.28 -2.38 -0.01 0.22 16 12 C -0.49 -26.72 6.61 25.60 0.17 -26.55 16 13 H 0.04 2.74 8.02 -2.91 -0.02 2.72 16 14 C 0.03 1.87 5.47 84.66 0.46 2.33 16 15 N -0.93 -55.98 13.96 21.45 0.30 -55.68 16 16 Si 0.92 44.35 27.17 68.60 1.86 46.21 16 17 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 19 H -0.27 -12.67 6.52 99.48 0.65 -12.02 16 20 C -0.03 -1.38 2.44 -19.87 -0.05 -1.43 16 21 C -0.11 -4.08 7.69 22.27 0.17 -3.91 16 22 C -0.12 -3.72 10.05 22.27 0.22 -3.49 16 23 C -0.14 -3.91 10.05 22.27 0.22 -3.68 16 24 C -0.12 -3.71 10.05 22.27 0.22 -3.49 16 25 C -0.16 -6.06 8.42 22.27 0.19 -5.87 16 26 H 0.07 1.37 6.86 -2.38 -0.02 1.36 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.07 2.18 6.99 -2.39 -0.02 2.16 16 30 H 0.06 2.14 4.42 -2.39 -0.01 2.13 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.11 2.73 6.77 -2.39 -0.02 2.72 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 36 H 0.08 3.79 6.54 -2.39 -0.02 3.78 16 37 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.11 4.33 7.69 -2.91 -0.02 4.31 16 39 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 41 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 42 H 0.10 3.81 8.04 -2.91 -0.02 3.78 16 Total: -1.00 -63.64 321.17 2.26 -61.37 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.93 Total: 20.96 kcal Atomic # 6 Polarization: -37.21 SS G_CDS: 3.93 Total: -33.28 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -2.85 Total: -80.26 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -1.61 Total: -15.01 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.86 Total: 46.21 kcal Total: -63.64 2.26 -61.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251698460.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.647 kcal (2) G-P(sol) polarization free energy of solvation -63.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds