Wall clock time and date at job start Mon Mar 30 2020 06:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53005 * 109.46802 * 2 1 4 4 C 1.52995 * 109.47085 * 300.00348 * 3 2 1 5 5 C 1.52999 * 109.46826 * 60.00058 * 3 2 1 6 6 C 1.53006 * 109.46901 * 65.00135 * 5 3 2 7 7 N 1.46502 * 109.46802 * 180.02562 * 3 2 1 8 8 C 1.34776 * 119.99692 * 180.02562 * 7 3 2 9 9 O 1.21592 * 119.99839 * 359.97438 * 8 7 3 10 10 C 1.47634 * 119.99869 * 180.02562 * 8 7 3 11 11 C 1.40016 * 119.89772 * 0.24248 * 10 8 7 12 12 C 1.36315 * 120.10695 * 180.25948 * 11 10 8 13 13 C 1.40885 * 119.89334 * 359.47978 * 12 11 10 14 14 C 1.41111 * 120.10536 * 180.30167 * 13 12 11 15 15 H 1.07996 * 120.00198 * 154.52656 * 14 13 12 16 16 C 1.40227 * 119.99546 * 334.52369 * 14 13 12 17 17 N 1.30644 * 120.00033 * 343.06447 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 163.06669 * 16 14 13 19 19 H 1.48503 * 109.47357 * 59.99742 * 18 16 14 20 20 H 1.48498 * 109.47368 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47336 * 300.00015 * 18 16 14 22 22 C 1.40888 * 119.79168 * 0.27218 * 13 12 11 23 23 C 1.36313 * 119.89186 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47066 * 299.99661 * 1 2 3 25 25 H 1.08994 * 109.47133 * 59.99785 * 1 2 3 26 26 H 1.09004 * 109.46634 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47066 * 240.00339 * 2 1 3 28 28 H 1.08994 * 109.47133 * 120.00215 * 2 1 3 29 29 H 1.09000 * 109.47162 * 299.99893 * 4 3 2 30 30 H 1.08996 * 109.47301 * 60.00155 * 4 3 2 31 31 H 1.09004 * 109.47330 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46920 * 184.99125 * 5 3 2 33 33 H 1.08992 * 109.47311 * 305.00009 * 5 3 2 34 34 H 1.08994 * 109.47123 * 299.99525 * 6 5 3 35 35 H 1.09002 * 109.47073 * 59.99904 * 6 5 3 36 36 H 1.09000 * 109.47037 * 179.97438 * 6 5 3 37 37 H 0.97001 * 120.00109 * 0.02562 * 7 3 2 38 38 H 1.08000 * 119.94850 * 0.03457 * 11 10 8 39 39 H 1.08004 * 120.05046 * 179.74690 * 12 11 10 40 40 H 0.97005 * 119.99903 * 179.97438 * 17 16 14 41 41 H 1.08007 * 120.05374 * 180.02562 * 22 13 12 42 42 H 1.07999 * 119.94443 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5299 2.1638 -1.2492 5 6 1.5300 2.1637 1.2493 6 6 2.1402 1.5187 2.4953 7 7 3.5051 1.4426 -0.0006 8 6 4.1789 2.6098 -0.0002 9 8 3.5708 3.6628 0.0002 10 6 5.6552 2.6099 -0.0014 11 6 6.3532 1.3961 -0.0081 12 6 7.7163 1.3911 -0.0039 13 6 8.4229 2.6099 -0.0039 14 6 9.8340 2.6100 -0.0059 15 1 10.3734 3.4547 -0.4082 16 6 10.5359 1.5132 0.5145 17 7 9.9263 0.6551 1.2882 18 14 12.3425 1.2793 0.1014 19 1 13.1149 2.4564 0.5738 20 1 12.8489 0.0544 0.7711 21 1 12.5004 1.1414 -1.3688 22 6 7.7162 3.8288 -0.0024 23 6 6.3531 3.8237 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 1.6500 -2.1392 30 1 0.4400 2.1638 -1.2491 31 1 1.8928 3.1917 -1.2490 32 1 1.8184 3.2140 1.2057 33 1 0.4437 2.0867 1.2952 34 1 1.8519 0.4685 2.5390 35 1 3.2265 1.5957 2.4494 36 1 1.7772 2.0327 3.3853 37 1 3.9901 0.6025 -0.0013 38 1 5.8107 0.4622 -0.0129 39 1 8.2537 0.4543 -0.0049 40 1 10.4117 -0.1038 1.6479 41 1 8.2536 4.7656 -0.0028 42 1 5.8105 4.7575 0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270473373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:07 Heat of formation + Delta-G solvation = -41.404505 kcal Electronic energy + Delta-G solvation = -21409.548593 eV Core-core repulsion = 18353.279390 eV Total energy + Delta-G solvation = -3056.269203 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.81574 -37.67220 -36.38457 -33.84744 -32.49770 -31.15513 -30.13779 -29.42441 -28.72312 -25.92872 -24.44571 -23.19056 -21.92532 -20.95548 -19.58170 -18.65029 -17.50910 -16.96541 -15.51787 -15.43458 -15.09891 -14.65141 -14.31289 -13.96388 -13.41579 -13.20537 -13.10392 -12.78890 -12.76844 -12.39869 -12.09373 -12.00988 -11.87192 -11.80243 -11.46570 -11.30810 -11.25541 -11.12372 -10.97483 -10.87835 -10.62887 -10.32648 -10.30675 -10.00085 -9.53799 -9.34083 -8.70421 -8.46946 -7.70465 -7.51537 -7.01340 -4.59087 2.26651 2.93495 2.94808 2.98975 3.04690 3.74892 3.82242 3.91606 4.59167 4.78505 4.94219 5.11342 5.35049 5.37870 5.49105 5.59068 5.62473 5.73157 5.84444 5.86253 5.94493 6.00165 6.04635 6.08999 6.16867 6.22215 6.33282 6.33847 6.49043 6.60594 6.65516 6.78196 6.84452 7.03184 7.15142 7.18585 7.45231 7.67801 7.82121 7.87281 8.08952 8.34237 8.41387 8.64659 8.76860 9.17536 9.90834 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032011 B = 0.003910 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.485255 B = 7158.810049 C = 7507.069778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.180 3.820 4 C -0.164 4.164 5 C -0.135 4.135 6 C -0.148 4.148 7 N -0.733 5.733 8 C 0.576 3.424 9 O -0.571 6.571 10 C -0.283 4.283 11 C -0.064 4.064 12 C -0.177 4.177 13 C 0.129 3.871 14 C -0.446 4.446 15 H 0.084 0.916 16 C 0.075 3.925 17 N -0.774 5.774 18 Si 0.913 3.087 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.239 4.239 23 C -0.023 4.023 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.394 0.606 38 H 0.088 0.912 39 H 0.119 0.881 40 H 0.286 0.714 41 H 0.097 0.903 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.516 -4.491 -0.951 11.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.094 3.906 4 C -0.221 4.221 5 C -0.174 4.174 6 C -0.205 4.205 7 N -0.385 5.385 8 C 0.371 3.629 9 O -0.453 6.453 10 C -0.287 4.287 11 C -0.083 4.083 12 C -0.197 4.197 13 C 0.126 3.874 14 C -0.473 4.473 15 H 0.102 0.898 16 C -0.146 4.146 17 N -0.398 5.398 18 Si 0.737 3.263 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.258 4.258 23 C -0.042 4.042 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.229 0.771 38 H 0.106 0.894 39 H 0.137 0.863 40 H 0.098 0.902 41 H 0.115 0.885 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.911 -3.974 -0.794 11.639 hybrid contribution 1.112 -0.720 -0.031 1.325 sum -9.799 -4.694 -0.826 10.897 Atomic orbital electron populations 1.21846 0.95067 1.01514 1.02377 1.21793 0.96651 0.95752 1.02404 1.20173 0.80560 0.94614 0.95274 1.22264 1.00280 1.03017 0.96588 1.21977 0.99447 1.02132 0.93803 1.21734 1.01863 0.99776 0.97125 1.46031 1.05547 1.09104 1.77866 1.18473 0.87939 0.82574 0.73961 1.90562 1.70405 1.31643 1.52701 1.18968 0.90213 0.94453 1.25102 1.20480 0.94838 0.94659 0.98311 1.20969 0.92410 0.98711 1.07566 1.17774 0.93260 0.91086 0.85300 1.19807 0.91711 1.02436 1.33394 0.89816 1.26077 1.01570 0.94486 0.92472 1.69733 1.39128 1.10566 1.20344 0.86268 0.81091 0.78777 0.80158 1.18693 1.20071 1.18504 1.20725 0.93242 0.97159 1.14705 1.20359 0.93807 0.95756 0.94309 0.92153 0.92238 0.92798 0.91648 0.91254 0.93100 0.92400 0.90195 0.89720 0.91874 0.93242 0.92257 0.93405 0.77056 0.89410 0.86282 0.90241 0.88473 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.22 37.16 0.34 -1.04 16 2 C -0.13 -1.41 4.86 -26.72 -0.13 -1.54 16 3 C 0.18 2.51 0.52 -131.82 -0.07 2.44 16 4 C -0.16 -2.32 8.05 37.15 0.30 -2.02 16 5 C -0.14 -1.93 4.46 -26.73 -0.12 -2.05 16 6 C -0.15 -2.04 9.46 37.16 0.35 -1.69 16 7 N -0.73 -12.09 4.13 -48.60 -0.20 -12.29 16 8 C 0.58 11.89 6.97 -12.43 -0.09 11.80 16 9 O -0.57 -12.88 12.58 5.29 0.07 -12.81 16 10 C -0.28 -6.41 5.89 -104.73 -0.62 -7.03 16 11 C -0.06 -1.41 9.47 -39.61 -0.38 -1.78 16 12 C -0.18 -4.35 8.63 -39.27 -0.34 -4.69 16 13 C 0.13 3.30 5.57 -106.80 -0.59 2.70 16 14 C -0.45 -11.14 9.05 -37.75 -0.34 -11.49 16 15 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 16 C 0.07 1.75 5.15 -17.31 -0.09 1.66 16 17 N -0.77 -18.62 10.95 55.56 0.61 -18.01 16 18 Si 0.91 17.34 29.59 -169.99 -5.03 12.31 16 19 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 20 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 21 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 22 C -0.24 -5.81 9.73 -39.27 -0.38 -6.19 16 23 C -0.02 -0.54 9.52 -39.61 -0.38 -0.92 16 24 H 0.06 0.55 6.32 -51.93 -0.33 0.22 16 25 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.74 6.56 -51.93 -0.34 0.40 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 31 H 0.08 1.38 6.17 -51.93 -0.32 1.06 16 32 H 0.08 1.47 6.32 -51.93 -0.33 1.14 16 33 H 0.06 0.76 6.17 -51.93 -0.32 0.44 16 34 H 0.05 0.59 6.56 -51.93 -0.34 0.25 16 35 H 0.06 0.96 7.29 -51.93 -0.38 0.58 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.39 5.98 6.47 -40.82 -0.26 5.71 16 38 H 0.09 1.65 6.37 -52.49 -0.33 1.32 16 39 H 0.12 2.96 6.18 -52.48 -0.32 2.64 16 40 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 41 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 42 H 0.10 2.29 7.63 -52.49 -0.40 1.89 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -27.08 326.85 -8.17 -35.25 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -6.01 Total: 12.44 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -2.53 Total: -21.82 kcal Atomic # 7 Polarization: -30.70 SS G_CDS: 0.41 Total: -30.29 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.07 Total: -12.81 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.08 -8.17 -35.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270473373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.154 kcal (2) G-P(sol) polarization free energy of solvation -27.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds