Wall clock time and date at job start Mon Mar 30 2020 06:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53005 * 109.46802 * 2 1 4 4 C 1.52995 * 109.47085 * 300.00348 * 3 2 1 5 5 C 1.52999 * 109.46826 * 60.00058 * 3 2 1 6 6 C 1.53006 * 109.46901 * 65.00135 * 5 3 2 7 7 N 1.46502 * 109.46802 * 180.02562 * 3 2 1 8 8 C 1.34776 * 119.99692 * 180.02562 * 7 3 2 9 9 O 1.21592 * 119.99839 * 359.97438 * 8 7 3 10 10 C 1.47634 * 119.99869 * 180.02562 * 8 7 3 11 11 C 1.40016 * 119.89772 * 0.24248 * 10 8 7 12 12 C 1.36315 * 120.10695 * 180.25948 * 11 10 8 13 13 C 1.40885 * 119.89334 * 359.47978 * 12 11 10 14 14 C 1.41111 * 120.10536 * 180.30167 * 13 12 11 15 15 H 1.07996 * 120.00198 * 154.52656 * 14 13 12 16 16 C 1.40227 * 119.99546 * 334.52369 * 14 13 12 17 17 N 1.30644 * 120.00033 * 343.06447 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 163.06669 * 16 14 13 19 19 H 1.48503 * 109.47357 * 59.99742 * 18 16 14 20 20 H 1.48498 * 109.47368 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47336 * 300.00015 * 18 16 14 22 22 C 1.40888 * 119.79168 * 0.27218 * 13 12 11 23 23 C 1.36313 * 119.89186 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47066 * 299.99661 * 1 2 3 25 25 H 1.08994 * 109.47133 * 59.99785 * 1 2 3 26 26 H 1.09004 * 109.46634 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47066 * 240.00339 * 2 1 3 28 28 H 1.08994 * 109.47133 * 120.00215 * 2 1 3 29 29 H 1.09000 * 109.47162 * 299.99893 * 4 3 2 30 30 H 1.08996 * 109.47301 * 60.00155 * 4 3 2 31 31 H 1.09004 * 109.47330 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46920 * 184.99125 * 5 3 2 33 33 H 1.08992 * 109.47311 * 305.00009 * 5 3 2 34 34 H 1.08994 * 109.47123 * 299.99525 * 6 5 3 35 35 H 1.09002 * 109.47073 * 59.99904 * 6 5 3 36 36 H 1.09000 * 109.47037 * 179.97438 * 6 5 3 37 37 H 0.97001 * 120.00109 * 0.02562 * 7 3 2 38 38 H 1.08000 * 119.94850 * 0.03457 * 11 10 8 39 39 H 1.08004 * 120.05046 * 179.74690 * 12 11 10 40 40 H 0.97005 * 119.99903 * 179.97438 * 17 16 14 41 41 H 1.08007 * 120.05374 * 180.02562 * 22 13 12 42 42 H 1.07999 * 119.94443 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5299 2.1638 -1.2492 5 6 1.5300 2.1637 1.2493 6 6 2.1402 1.5187 2.4953 7 7 3.5051 1.4426 -0.0006 8 6 4.1789 2.6098 -0.0002 9 8 3.5708 3.6628 0.0002 10 6 5.6552 2.6099 -0.0014 11 6 6.3532 1.3961 -0.0081 12 6 7.7163 1.3911 -0.0039 13 6 8.4229 2.6099 -0.0039 14 6 9.8340 2.6100 -0.0059 15 1 10.3734 3.4547 -0.4082 16 6 10.5359 1.5132 0.5145 17 7 9.9263 0.6551 1.2882 18 14 12.3425 1.2793 0.1014 19 1 13.1149 2.4564 0.5738 20 1 12.8489 0.0544 0.7711 21 1 12.5004 1.1414 -1.3688 22 6 7.7162 3.8288 -0.0024 23 6 6.3531 3.8237 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 1.6500 -2.1392 30 1 0.4400 2.1638 -1.2491 31 1 1.8928 3.1917 -1.2490 32 1 1.8184 3.2140 1.2057 33 1 0.4437 2.0867 1.2952 34 1 1.8519 0.4685 2.5390 35 1 3.2265 1.5957 2.4494 36 1 1.7772 2.0327 3.3853 37 1 3.9901 0.6025 -0.0013 38 1 5.8107 0.4622 -0.0129 39 1 8.2537 0.4543 -0.0049 40 1 10.4117 -0.1038 1.6479 41 1 8.2536 4.7656 -0.0028 42 1 5.8105 4.7575 0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270473373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:06 Heat of formation + Delta-G solvation = -54.911090 kcal Electronic energy + Delta-G solvation = -21410.134283 eV Core-core repulsion = 18353.279390 eV Total energy + Delta-G solvation = -3056.854892 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.26140 -39.33371 -37.89016 -35.64638 -33.91683 -32.19322 -31.81296 -31.28150 -29.90232 -27.66868 -25.56054 -24.28234 -23.57279 -22.79301 -21.12377 -19.95602 -19.34581 -18.46714 -17.19536 -16.76946 -16.16068 -16.03039 -15.77785 -15.70997 -15.03328 -14.76164 -14.42844 -14.28734 -13.90153 -13.76517 -13.71494 -13.36052 -13.19514 -12.91312 -12.86194 -12.72475 -12.66596 -12.57311 -12.31561 -12.09514 -12.00094 -11.75785 -11.39392 -11.33902 -11.33264 -11.10495 -10.31948 -9.90504 -9.56393 -9.37797 -8.77674 -6.47782 0.48141 1.15020 1.38954 1.44831 1.51908 2.15517 2.21572 2.46347 2.82461 3.70054 3.75372 3.97037 4.07706 4.28651 4.32096 4.36998 4.45441 4.52180 4.54786 4.69747 4.74830 4.82097 4.91765 4.93353 4.97715 5.03743 5.10542 5.15848 5.20201 5.24663 5.30917 5.31861 5.33197 5.48590 5.57647 5.61514 5.81239 5.86539 5.97512 6.00343 6.23998 6.54794 6.77959 6.83500 6.91190 7.58208 8.17576 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032011 B = 0.003910 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.485255 B = 7158.810049 C = 7507.069778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.173 3.827 4 C -0.160 4.160 5 C -0.133 4.133 6 C -0.144 4.144 7 N -0.718 5.718 8 C 0.576 3.424 9 O -0.593 6.593 10 C -0.291 4.291 11 C -0.055 4.055 12 C -0.197 4.197 13 C 0.102 3.898 14 C -0.479 4.479 15 H 0.084 0.916 16 C 0.039 3.961 17 N -0.801 5.801 18 Si 0.987 3.013 19 H -0.260 1.260 20 H -0.263 1.263 21 H -0.258 1.258 22 C -0.254 4.254 23 C -0.035 4.035 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.029 0.971 36 H 0.053 0.947 37 H 0.402 0.598 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.296 0.704 41 H 0.102 0.898 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.500 -6.553 -0.985 13.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C 0.088 3.912 4 C -0.218 4.218 5 C -0.171 4.171 6 C -0.201 4.201 7 N -0.369 5.369 8 C 0.369 3.631 9 O -0.477 6.477 10 C -0.296 4.296 11 C -0.074 4.074 12 C -0.216 4.216 13 C 0.098 3.902 14 C -0.506 4.506 15 H 0.102 0.898 16 C -0.180 4.180 17 N -0.425 5.425 18 Si 0.807 3.193 19 H -0.184 1.184 20 H -0.187 1.187 21 H -0.182 1.182 22 C -0.273 4.273 23 C -0.054 4.054 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.239 0.761 38 H 0.140 0.860 39 H 0.131 0.869 40 H 0.108 0.892 41 H 0.120 0.880 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.928 -6.059 -0.824 13.404 hybrid contribution 1.281 -0.064 0.002 1.282 sum -10.647 -6.123 -0.822 12.310 Atomic orbital electron populations 1.21849 0.93317 1.02800 1.02637 1.21774 0.98026 0.93027 1.03126 1.20472 0.78631 0.97004 0.95097 1.22218 1.01969 1.00818 0.96793 1.21942 1.01137 0.99917 0.94140 1.21703 0.99814 1.01388 0.97220 1.45948 1.06971 1.08007 1.76016 1.18228 0.87195 0.83482 0.74191 1.90564 1.70576 1.32810 1.53752 1.19314 0.91806 0.94320 1.24120 1.20729 0.94210 0.95889 0.96569 1.21005 0.93380 0.98128 1.09081 1.18118 0.94119 0.91807 0.86106 1.20078 0.91955 1.03776 1.34842 0.89818 1.26899 1.05971 0.93516 0.91604 1.69756 1.41138 1.11022 1.20540 0.85166 0.75194 0.79061 0.79879 1.18376 1.18720 1.18235 1.20858 0.93687 0.97312 1.15460 1.20504 0.93764 0.96512 0.94629 0.91897 0.91973 0.91073 0.90920 0.90608 0.92832 0.89748 0.93696 0.93385 0.89182 0.90824 0.95192 0.92759 0.76126 0.86010 0.86930 0.89239 0.88016 0.88059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.22 71.99 0.66 -1.46 16 2 C -0.12 -2.24 4.86 30.60 0.15 -2.10 16 3 C 0.17 4.49 0.52 3.60 0.00 4.50 16 4 C -0.16 -4.30 8.05 71.98 0.58 -3.72 16 5 C -0.13 -3.59 4.46 30.60 0.14 -3.45 16 6 C -0.14 -3.73 9.46 71.98 0.68 -3.05 16 7 N -0.72 -22.82 4.13 -425.94 -1.76 -24.58 16 8 C 0.58 23.87 6.97 86.72 0.60 24.47 16 9 O -0.59 -27.33 12.58 -4.00 -0.05 -27.38 16 10 C -0.29 -13.37 5.89 -19.94 -0.12 -13.49 16 11 C -0.06 -2.43 9.47 22.25 0.21 -2.22 16 12 C -0.20 -9.81 8.63 22.47 0.19 -9.62 16 13 C 0.10 5.35 5.57 -21.28 -0.12 5.24 16 14 C -0.48 -24.56 9.05 23.46 0.21 -24.35 16 15 H 0.08 4.12 7.90 -2.91 -0.02 4.09 16 16 C 0.04 1.82 5.15 85.35 0.44 2.26 16 17 N -0.80 -38.64 10.95 21.87 0.24 -38.40 16 18 Si 0.99 35.13 29.59 68.60 2.03 37.16 16 19 H -0.26 -9.05 7.11 99.48 0.71 -8.35 16 20 H -0.26 -8.74 7.11 99.48 0.71 -8.04 16 21 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 22 C -0.25 -12.82 9.73 22.47 0.22 -12.60 16 23 C -0.03 -1.70 9.52 22.25 0.21 -1.49 16 24 H 0.06 0.88 6.32 -2.39 -0.02 0.86 16 25 H 0.06 0.87 6.43 -2.39 -0.02 0.85 16 26 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.08 1.33 6.56 -2.39 -0.02 1.31 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.78 6.43 -2.39 -0.02 1.77 16 31 H 0.04 1.54 6.17 -2.38 -0.01 1.52 16 32 H 0.05 1.67 6.32 -2.39 -0.02 1.65 16 33 H 0.09 1.93 6.17 -2.39 -0.01 1.91 16 34 H 0.07 1.53 6.56 -2.39 -0.02 1.52 16 35 H 0.03 0.93 7.29 -2.39 -0.02 0.92 16 36 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.40 11.39 6.47 -92.71 -0.60 10.79 16 38 H 0.12 4.40 6.37 -2.91 -0.02 4.38 16 39 H 0.11 5.69 6.18 -2.91 -0.02 5.68 16 40 H 0.30 12.73 8.29 -92.70 -0.77 11.96 16 41 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 42 H 0.10 4.81 7.63 -2.91 -0.02 4.79 16 Total: -1.00 -60.37 326.85 4.96 -55.42 By element: Atomic # 1 Polarization: 38.43 SS G_CDS: 0.43 Total: 38.85 kcal Atomic # 6 Polarization: -45.15 SS G_CDS: 4.07 Total: -41.08 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -1.52 Total: -62.98 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.38 kcal Atomic # 14 Polarization: 35.13 SS G_CDS: 2.03 Total: 37.16 kcal Total: -60.37 4.96 -55.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270473373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.506 kcal (2) G-P(sol) polarization free energy of solvation -60.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds