Wall clock time and date at job start Mon Mar 30 2020 07:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47018 * 2 1 4 4 H 1.08998 * 115.56404 * 29.31244 * 3 2 1 5 5 C 1.53001 * 117.50100 * 243.61844 * 3 2 1 6 6 C 1.53001 * 60.00274 * 252.51231 * 5 3 2 7 7 H 1.09000 * 117.49906 * 107.51166 * 6 5 3 8 8 N 1.46899 * 117.49910 * 252.51471 * 6 5 3 9 9 C 1.46903 * 110.99632 * 223.60948 * 8 6 5 10 10 H 1.08990 * 109.47520 * 34.99608 * 9 8 6 11 11 C 1.53006 * 109.46809 * 274.99169 * 9 8 6 12 12 C 1.50699 * 109.47224 * 154.99935 * 9 8 6 13 13 C 1.38296 * 119.93305 * 220.00208 * 12 9 8 14 14 C 1.38104 * 120.07463 * 179.97438 * 13 12 9 15 15 C 1.38878 * 119.92725 * 0.02562 * 14 13 12 16 16 O 1.35751 * 120.07119 * 180.02562 * 15 14 13 17 17 C 1.34834 * 116.99516 * 354.46596 * 16 15 14 18 18 H 1.07993 * 120.00380 * 5.06010 * 17 16 15 19 19 C 1.38657 * 119.99722 * 185.05250 * 17 16 15 20 20 N 1.31554 * 119.99983 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00036 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47021 * 90.00032 * 21 19 17 23 23 H 1.48497 * 109.47048 * 209.99542 * 21 19 17 24 24 H 1.48498 * 109.47448 * 329.99686 * 21 19 17 25 25 C 1.38882 * 119.86309 * 0.28388 * 15 14 13 26 26 C 1.38100 * 119.92661 * 359.40189 * 25 15 14 27 27 H 1.08995 * 109.47678 * 300.00131 * 1 2 3 28 28 H 1.08998 * 109.46821 * 60.00144 * 1 2 3 29 29 H 1.09001 * 109.46915 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47473 * 240.00252 * 2 1 3 31 31 H 1.09000 * 109.47267 * 120.00107 * 2 1 3 32 32 H 1.08997 * 117.50023 * 145.02264 * 5 3 2 33 33 H 1.09003 * 117.51384 * 359.97438 * 5 3 2 34 34 H 1.00893 * 111.00340 * 99.65068 * 8 6 5 35 35 H 1.08997 * 109.46505 * 60.00439 * 11 9 8 36 36 H 1.09000 * 109.46887 * 179.97438 * 11 9 8 37 37 H 1.08999 * 109.47328 * 300.00769 * 11 9 8 38 38 H 1.08005 * 119.96402 * 359.97438 * 13 12 9 39 39 H 1.07999 * 120.03898 * 180.02562 * 14 13 12 40 40 H 0.96999 * 120.00100 * 180.02562 * 20 19 17 41 41 H 1.07996 * 120.03406 * 179.72142 * 25 15 14 42 42 H 1.08005 * 119.96678 * 180.31834 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1717 0.4814 5 6 2.8440 1.9076 -1.2158 6 6 3.5501 1.6579 0.1184 7 1 4.1806 0.7722 0.1960 8 7 4.0108 2.8317 0.8721 9 6 5.3628 2.6174 1.4053 10 1 5.9421 2.0232 0.6987 11 6 5.2727 1.8770 2.7412 12 6 6.0374 3.9488 1.6135 13 6 7.3757 4.1008 1.2997 14 6 7.9968 5.3198 1.4889 15 6 7.2760 6.3934 1.9954 16 8 7.8834 7.5930 2.1821 17 6 9.2132 7.6460 1.9652 18 1 9.7323 6.7813 1.5792 19 6 9.9141 8.8110 2.2376 20 7 11.2114 8.8629 2.0255 21 14 9.0163 10.3066 2.9057 22 1 9.0099 10.2579 4.3900 23 1 9.7069 11.5411 2.4540 24 1 7.6184 10.3097 2.4045 25 6 5.9338 6.2358 2.3156 26 6 5.3170 5.0161 2.1180 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.7213 2.9428 -1.5343 33 1 3.0101 1.1860 -2.0156 34 1 3.3636 3.0642 1.6103 35 1 4.7847 0.9140 2.5905 36 1 6.2759 1.7176 3.1366 37 1 4.6933 2.4713 3.4477 38 1 7.9358 3.2654 0.9062 39 1 9.0418 5.4380 1.2433 40 1 11.7018 9.6777 2.2165 41 1 5.3719 7.0676 2.7139 42 1 4.2719 4.8943 2.3620 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300413581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:10 Heat of formation + Delta-G solvation = 10.992541 kcal Electronic energy + Delta-G solvation = -20351.203803 eV Core-core repulsion = 17297.206707 eV Total energy + Delta-G solvation = -3053.997096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.38339 -38.56604 -37.05571 -34.81430 -32.41157 -32.09459 -30.27069 -29.13790 -27.96234 -25.30475 -24.07095 -22.76789 -22.22357 -21.06071 -20.77802 -19.85470 -17.79977 -17.25624 -16.16536 -15.68656 -14.87158 -14.71487 -14.50003 -14.11573 -13.91121 -13.70607 -13.63045 -13.35549 -12.96156 -12.69938 -12.52967 -12.40255 -12.24513 -12.22999 -11.99168 -11.56613 -11.45776 -11.25255 -11.14929 -10.78655 -10.68480 -10.59605 -10.45897 -10.11077 -9.96314 -9.34743 -8.83110 -8.27124 -8.18059 -7.24470 -6.38676 -4.05059 2.18959 2.27109 3.23974 3.27446 3.42714 3.64986 3.93531 4.26345 4.50788 4.59797 4.75181 4.89884 4.90711 4.99129 5.07057 5.11741 5.14005 5.18280 5.33533 5.40527 5.48831 5.56215 5.63884 5.67343 5.72967 5.78952 5.82253 5.85916 5.92590 5.97866 6.13733 6.14771 6.18985 6.40008 6.61676 6.81699 6.99300 7.16245 7.32827 7.35748 7.39618 7.65987 7.83910 8.07630 8.96970 9.60486 10.69164 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040903 B = 0.002982 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.389288 B = 9386.911402 C = 9591.530425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.166 4.166 4 H 0.104 0.896 5 C -0.166 4.166 6 C 0.025 3.975 7 H 0.097 0.903 8 N -0.649 5.649 9 C 0.142 3.858 10 H 0.078 0.922 11 C -0.175 4.175 12 C -0.158 4.158 13 C -0.069 4.069 14 C -0.220 4.220 15 C 0.159 3.841 16 O -0.220 6.220 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.062 3.938 20 N -0.881 5.881 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.260 1.260 25 C -0.194 4.194 26 C -0.056 4.056 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.341 0.659 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.107 0.893 39 H 0.132 0.868 40 H 0.279 0.721 41 H 0.115 0.885 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.930 -16.042 -1.951 23.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.186 4.186 4 H 0.122 0.878 5 C -0.204 4.204 6 C -0.085 4.085 7 H 0.114 0.886 8 N -0.279 5.279 9 C 0.032 3.968 10 H 0.096 0.904 11 C -0.234 4.234 12 C -0.159 4.159 13 C -0.088 4.088 14 C -0.239 4.239 15 C 0.107 3.893 16 O -0.125 6.125 17 C -0.464 4.464 18 H 0.123 0.877 19 C -0.141 4.141 20 N -0.520 5.520 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.213 4.213 26 C -0.075 4.075 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.161 0.839 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.125 0.875 39 H 0.150 0.850 40 H 0.089 0.911 41 H 0.133 0.867 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.578 -15.331 -2.422 22.710 hybrid contribution -0.218 0.080 0.901 0.930 sum -16.796 -15.250 -1.521 22.738 Atomic orbital electron populations 1.21736 0.95536 1.01398 1.01943 1.21115 0.95942 0.94302 1.01728 1.22787 0.93940 0.97799 1.04037 0.87769 1.23308 1.03192 1.02519 0.91391 1.22489 0.93115 0.93633 0.99306 0.88559 1.60333 1.03425 1.34310 1.29822 1.20268 0.88718 0.93672 0.94107 0.90386 1.22519 1.02681 0.99675 0.98551 1.19127 0.93995 0.94836 1.07991 1.20594 0.93689 0.96381 0.98104 1.21227 1.01555 0.93272 1.07834 1.19126 0.91909 0.85295 0.93004 1.83574 1.24058 1.26948 1.77911 1.20763 0.79007 1.02223 1.44404 0.87678 1.24465 0.94906 0.98383 0.96325 1.69647 1.06216 1.29184 1.46922 0.86179 0.80573 0.80656 0.79479 1.19943 1.20835 1.18365 1.20200 0.93147 0.98379 1.09568 1.20306 0.97933 0.91772 0.97477 0.92736 0.92596 0.92885 0.91939 0.91974 0.88350 0.89147 0.83924 0.93276 0.91778 0.92369 0.87499 0.85047 0.91117 0.86730 0.87258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.87 37.15 0.37 -0.60 16 2 C -0.09 -0.67 6.22 -26.73 -0.17 -0.84 16 3 C -0.17 -1.43 5.54 -90.61 -0.50 -1.93 16 4 H 0.10 0.92 8.07 -51.93 -0.42 0.50 16 5 C -0.17 -1.61 10.10 -26.73 -0.27 -1.88 16 6 C 0.03 0.25 5.69 -67.71 -0.39 -0.13 16 7 H 0.10 0.94 7.77 -51.93 -0.40 0.53 16 8 N -0.65 -7.65 5.95 -100.95 -0.60 -8.25 16 9 C 0.14 1.81 2.68 -68.86 -0.18 1.63 16 10 H 0.08 1.00 7.59 -51.93 -0.39 0.60 16 11 C -0.18 -1.94 9.14 37.16 0.34 -1.60 16 12 C -0.16 -2.60 4.96 -104.58 -0.52 -3.12 16 13 C -0.07 -1.25 9.66 -39.61 -0.38 -1.64 16 14 C -0.22 -4.79 9.17 -39.39 -0.36 -5.15 16 15 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 16 O -0.22 -5.88 8.59 0.04 0.00 -5.88 16 17 C -0.39 -11.07 9.95 30.89 0.31 -10.76 16 18 H 0.11 3.06 5.44 -52.49 -0.29 2.77 16 19 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 20 N -0.88 -25.70 13.96 55.48 0.77 -24.93 16 21 Si 0.91 21.93 28.62 -169.99 -4.86 17.06 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.26 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.19 -3.89 9.99 -39.39 -0.39 -4.29 16 26 C -0.06 -0.96 9.31 -39.61 -0.37 -1.33 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.44 7.88 -51.93 -0.41 0.03 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.09 0.78 8.03 -51.93 -0.42 0.37 16 34 H 0.34 3.69 7.77 -39.30 -0.31 3.38 16 35 H 0.05 0.47 8.07 -51.93 -0.42 0.05 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 38 H 0.11 1.68 8.03 -52.48 -0.42 1.26 16 39 H 0.13 3.02 5.64 -52.49 -0.30 2.72 16 40 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 42 H 0.11 1.57 7.24 -52.48 -0.38 1.19 16 LS Contribution 347.73 15.07 5.24 5.24 Total: -1.00 -29.24 347.73 -8.99 -38.23 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.67 Total: 5.04 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: -2.88 Total: -26.52 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.17 Total: -33.17 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: 0.00 Total: -5.88 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.86 Total: 17.06 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.24 -8.99 -38.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300413581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.224 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds