Wall clock time and date at job start Mon Mar 30 2020 07:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47018 * 2 1 4 4 H 1.08998 * 115.56404 * 29.31244 * 3 2 1 5 5 C 1.53001 * 117.50100 * 243.61844 * 3 2 1 6 6 C 1.53001 * 60.00274 * 252.51231 * 5 3 2 7 7 H 1.09000 * 117.49906 * 107.51166 * 6 5 3 8 8 N 1.46899 * 117.49910 * 252.51471 * 6 5 3 9 9 C 1.46903 * 110.99632 * 223.60948 * 8 6 5 10 10 H 1.08990 * 109.47520 * 34.99608 * 9 8 6 11 11 C 1.53006 * 109.46809 * 274.99169 * 9 8 6 12 12 C 1.50699 * 109.47224 * 154.99935 * 9 8 6 13 13 C 1.38296 * 119.93305 * 220.00208 * 12 9 8 14 14 C 1.38104 * 120.07463 * 179.97438 * 13 12 9 15 15 C 1.38878 * 119.92725 * 0.02562 * 14 13 12 16 16 O 1.35751 * 120.07119 * 180.02562 * 15 14 13 17 17 C 1.34834 * 116.99516 * 354.46596 * 16 15 14 18 18 H 1.07993 * 120.00380 * 5.06010 * 17 16 15 19 19 C 1.38657 * 119.99722 * 185.05250 * 17 16 15 20 20 N 1.31554 * 119.99983 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00036 * 0.02562 * 19 17 16 22 22 H 1.48505 * 109.47021 * 90.00032 * 21 19 17 23 23 H 1.48497 * 109.47048 * 209.99542 * 21 19 17 24 24 H 1.48498 * 109.47448 * 329.99686 * 21 19 17 25 25 C 1.38882 * 119.86309 * 0.28388 * 15 14 13 26 26 C 1.38100 * 119.92661 * 359.40189 * 25 15 14 27 27 H 1.08995 * 109.47678 * 300.00131 * 1 2 3 28 28 H 1.08998 * 109.46821 * 60.00144 * 1 2 3 29 29 H 1.09001 * 109.46915 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47473 * 240.00252 * 2 1 3 31 31 H 1.09000 * 109.47267 * 120.00107 * 2 1 3 32 32 H 1.08997 * 117.50023 * 145.02264 * 5 3 2 33 33 H 1.09003 * 117.51384 * 359.97438 * 5 3 2 34 34 H 1.00893 * 111.00340 * 99.65068 * 8 6 5 35 35 H 1.08997 * 109.46505 * 60.00439 * 11 9 8 36 36 H 1.09000 * 109.46887 * 179.97438 * 11 9 8 37 37 H 1.08999 * 109.47328 * 300.00769 * 11 9 8 38 38 H 1.08005 * 119.96402 * 359.97438 * 13 12 9 39 39 H 1.07999 * 120.03898 * 180.02562 * 14 13 12 40 40 H 0.96999 * 120.00100 * 180.02562 * 20 19 17 41 41 H 1.07996 * 120.03406 * 179.72142 * 25 15 14 42 42 H 1.08005 * 119.96678 * 180.31834 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1717 0.4814 5 6 2.8440 1.9076 -1.2158 6 6 3.5501 1.6579 0.1184 7 1 4.1806 0.7722 0.1960 8 7 4.0108 2.8317 0.8721 9 6 5.3628 2.6174 1.4053 10 1 5.9421 2.0232 0.6987 11 6 5.2727 1.8770 2.7412 12 6 6.0374 3.9488 1.6135 13 6 7.3757 4.1008 1.2997 14 6 7.9968 5.3198 1.4889 15 6 7.2760 6.3934 1.9954 16 8 7.8834 7.5930 2.1821 17 6 9.2132 7.6460 1.9652 18 1 9.7323 6.7813 1.5792 19 6 9.9141 8.8110 2.2376 20 7 11.2114 8.8629 2.0255 21 14 9.0163 10.3066 2.9057 22 1 9.0099 10.2579 4.3900 23 1 9.7069 11.5411 2.4540 24 1 7.6184 10.3097 2.4045 25 6 5.9338 6.2358 2.3156 26 6 5.3170 5.0161 2.1180 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.7213 2.9428 -1.5343 33 1 3.0101 1.1860 -2.0156 34 1 3.3636 3.0642 1.6103 35 1 4.7847 0.9140 2.5905 36 1 6.2759 1.7176 3.1366 37 1 4.6933 2.4713 3.4477 38 1 7.9358 3.2654 0.9062 39 1 9.0418 5.4380 1.2433 40 1 11.7018 9.6777 2.2165 41 1 5.3719 7.0676 2.7139 42 1 4.2719 4.8943 2.3620 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300413581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:10 Heat of formation + Delta-G solvation = -5.201470 kcal Electronic energy + Delta-G solvation = -20351.906028 eV Core-core repulsion = 17297.206707 eV Total energy + Delta-G solvation = -3054.699321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.95412 -39.62550 -38.45482 -35.96428 -34.41317 -32.86575 -31.83600 -30.39535 -29.11497 -27.24624 -24.65095 -24.06377 -23.75523 -22.01079 -21.69483 -21.02793 -19.70304 -19.08470 -17.16023 -16.86301 -16.38020 -15.93347 -15.69527 -15.46181 -15.32257 -15.10686 -14.88521 -14.41480 -14.34941 -14.10022 -13.87017 -13.77777 -13.32372 -13.15071 -12.98399 -12.83085 -12.64609 -12.41723 -12.20275 -12.08658 -12.00639 -11.86004 -11.73074 -11.33341 -11.25101 -10.89196 -10.67929 -9.76604 -9.15021 -8.91686 -8.49351 -6.21549 0.60441 0.68772 1.31137 1.35468 1.52194 2.28601 2.75844 2.93092 3.01525 3.13523 3.22535 3.91594 3.95983 4.06334 4.08751 4.17266 4.28659 4.32854 4.38970 4.40249 4.52672 4.60419 4.64765 4.71526 4.81551 4.90409 4.91580 4.99224 5.03199 5.10408 5.19728 5.26708 5.28251 5.30148 5.33160 5.43644 5.53242 5.60077 5.77346 5.83111 5.93335 6.22367 6.29803 6.50459 6.85207 7.60929 8.62429 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.040903 B = 0.002982 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.389288 B = 9386.911402 C = 9591.530425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.149 4.149 4 H 0.104 0.896 5 C -0.175 4.175 6 C 0.019 3.981 7 H 0.105 0.895 8 N -0.660 5.660 9 C 0.146 3.854 10 H 0.083 0.917 11 C -0.169 4.169 12 C -0.133 4.133 13 C -0.073 4.073 14 C -0.236 4.236 15 C 0.116 3.884 16 O -0.247 6.247 17 C -0.398 4.398 18 H 0.080 0.920 19 C 0.008 3.992 20 N -0.925 5.925 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.267 1.267 24 H -0.264 1.264 25 C -0.193 4.193 26 C -0.050 4.050 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.348 0.652 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.133 0.867 39 H 0.106 0.894 40 H 0.284 0.716 41 H 0.126 0.874 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.001 -17.958 -1.509 26.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.129 4.129 3 C -0.169 4.169 4 H 0.122 0.878 5 C -0.213 4.213 6 C -0.092 4.092 7 H 0.122 0.878 8 N -0.290 5.290 9 C 0.037 3.963 10 H 0.102 0.898 11 C -0.228 4.228 12 C -0.134 4.134 13 C -0.091 4.091 14 C -0.255 4.255 15 C 0.067 3.933 16 O -0.155 6.155 17 C -0.475 4.475 18 H 0.097 0.903 19 C -0.190 4.190 20 N -0.566 5.566 21 Si 0.794 3.206 22 H -0.190 1.190 23 H -0.192 1.192 24 H -0.188 1.188 25 C -0.212 4.212 26 C -0.068 4.068 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.169 0.831 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.151 0.849 39 H 0.124 0.876 40 H 0.094 0.906 41 H 0.144 0.856 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.682 -17.289 -1.986 26.272 hybrid contribution 0.529 0.347 0.684 0.931 sum -19.153 -16.942 -1.302 25.604 Atomic orbital electron populations 1.21732 0.95038 1.01962 1.01852 1.21128 0.96344 0.93304 1.02164 1.22794 0.92923 0.98601 1.02557 0.87822 1.23335 1.03987 1.02061 0.91937 1.22516 0.94235 0.93227 0.99181 0.87763 1.60208 1.02996 1.35659 1.30176 1.20208 0.89269 0.91283 0.95584 0.89840 1.22442 1.02745 1.00526 0.97101 1.19673 0.93172 0.96540 1.04047 1.20889 0.94852 0.95619 0.97770 1.21234 1.00703 0.94791 1.08793 1.19666 0.93427 0.85070 0.95140 1.83513 1.22796 1.28852 1.80361 1.20704 0.80237 1.01861 1.44664 0.90272 1.25294 0.95699 1.01229 0.96798 1.69731 1.07551 1.30365 1.48921 0.85200 0.78937 0.77374 0.79079 1.19006 1.19180 1.18826 1.20521 0.91775 1.00091 1.08838 1.20726 0.99566 0.90453 0.96046 0.92652 0.92888 0.92054 0.91638 0.91401 0.89814 0.88240 0.83144 0.91111 0.92316 0.92066 0.84920 0.87601 0.90611 0.85623 0.83566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.87 71.98 0.71 -0.80 16 2 C -0.09 -1.03 6.22 30.59 0.19 -0.84 16 3 C -0.15 -2.10 5.54 -10.79 -0.06 -2.16 16 4 H 0.10 1.50 8.07 -2.39 -0.02 1.48 16 5 C -0.17 -2.96 10.10 30.60 0.31 -2.65 16 6 C 0.02 0.31 5.69 44.92 0.26 0.57 16 7 H 0.10 1.61 7.77 -2.39 -0.02 1.60 16 8 N -0.66 -13.11 5.95 -473.29 -2.81 -15.92 16 9 C 0.15 3.20 2.68 44.17 0.12 3.32 16 10 H 0.08 1.81 7.59 -2.39 -0.02 1.79 16 11 C -0.17 -3.06 9.14 71.98 0.66 -2.40 16 12 C -0.13 -4.02 4.96 -19.84 -0.10 -4.12 16 13 C -0.07 -2.58 9.66 22.25 0.21 -2.36 16 14 C -0.24 -10.67 9.17 22.39 0.21 -10.47 16 15 C 0.12 5.57 6.65 22.58 0.15 5.72 16 16 O -0.25 -13.81 8.59 -22.79 -0.20 -14.01 16 17 C -0.40 -24.03 9.95 67.92 0.68 -23.36 16 18 H 0.08 5.01 5.44 -2.91 -0.02 4.99 16 19 C 0.01 0.46 5.49 84.83 0.47 0.93 16 20 N -0.92 -56.17 13.96 21.61 0.30 -55.87 16 21 Si 0.97 46.34 28.62 68.60 1.96 48.30 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.26 -12.60 7.11 99.48 0.71 -11.90 16 25 C -0.19 -7.59 9.99 22.39 0.22 -7.36 16 26 C -0.05 -1.56 9.31 22.25 0.21 -1.35 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.54 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.71 7.88 -2.39 -0.02 0.70 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.10 1.48 8.03 -2.39 -0.02 1.46 16 34 H 0.35 6.05 7.77 -89.70 -0.70 5.35 16 35 H 0.07 1.02 8.07 -2.39 -0.02 1.00 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.09 8.13 -2.39 -0.02 1.07 16 38 H 0.13 3.95 8.03 -2.91 -0.02 3.93 16 39 H 0.11 5.27 5.64 -2.91 -0.02 5.26 16 40 H 0.28 15.81 8.31 -92.71 -0.77 15.04 16 41 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 42 H 0.15 3.54 7.24 -2.91 -0.02 3.52 16 Total: -1.00 -66.27 347.73 3.79 -62.48 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.30 Total: 22.35 kcal Atomic # 6 Polarization: -51.57 SS G_CDS: 4.23 Total: -47.34 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -2.51 Total: -71.79 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.20 Total: -14.01 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.96 Total: 48.30 kcal Total: -66.27 3.79 -62.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300413581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.281 kcal (2) G-P(sol) polarization free energy of solvation -66.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds