Wall clock time and date at job start Mon Mar 30 2020 07:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00330 * 2 1 4 4 C 1.53005 * 109.46751 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47401 * 240.00032 * 3 2 1 6 6 C 1.52992 * 109.47451 * 119.99457 * 3 2 1 7 7 N 1.46902 * 109.47440 * 180.02562 * 6 3 2 8 8 C 1.46896 * 111.00265 * 180.02562 * 7 6 3 9 9 C 1.50699 * 109.47325 * 180.02562 * 8 7 6 10 10 C 1.38118 * 120.03410 * 260.00127 * 9 8 7 11 11 C 1.38285 * 120.06721 * 179.97438 * 10 9 8 12 12 C 1.38323 * 120.13964 * 359.95502 * 11 10 9 13 13 C 1.38076 * 120.06761 * 0.02562 * 12 11 10 14 14 C 1.38854 * 120.03536 * 79.95475 * 9 8 7 15 15 O 1.35751 * 120.07020 * 0.04730 * 14 9 8 16 16 C 1.34834 * 117.00114 * 174.38801 * 15 14 9 17 17 H 1.07996 * 119.99771 * 5.06857 * 16 15 14 18 18 C 1.38655 * 119.99684 * 185.07486 * 16 15 14 19 19 N 1.31555 * 120.00329 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99885 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47008 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47461 * 119.99450 * 20 18 16 23 23 H 1.48499 * 109.46853 * 239.99794 * 20 18 16 24 24 H 1.08001 * 119.99741 * 179.97438 * 1 2 3 25 25 H 1.08000 * 120.00186 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00186 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47506 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.47271 * 300.00466 * 4 3 2 29 29 H 1.09004 * 109.47314 * 60.00136 * 4 3 2 30 30 H 1.08996 * 109.46794 * 299.99546 * 5 3 2 31 31 H 1.09001 * 109.46952 * 59.99331 * 5 3 2 32 32 H 1.09001 * 109.46961 * 179.97438 * 5 3 2 33 33 H 1.08996 * 109.47023 * 60.00283 * 6 3 2 34 34 H 1.09002 * 109.47742 * 300.00244 * 6 3 2 35 35 H 1.00901 * 110.99888 * 56.04980 * 7 6 3 36 36 H 1.08996 * 109.47209 * 59.99865 * 8 7 6 37 37 H 1.09000 * 109.47353 * 299.99890 * 8 7 6 38 38 H 1.08004 * 119.96844 * 359.97438 * 10 9 8 39 39 H 1.07999 * 119.92572 * 179.97438 * 11 10 9 40 40 H 1.08002 * 119.96339 * 180.02562 * 12 11 10 41 41 H 1.08000 * 120.02961 * 179.72101 * 13 12 11 42 42 H 0.96997 * 120.00240 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2492 6 6 2.9431 1.3862 1.2492 7 7 3.6772 2.6586 1.2495 8 6 4.5346 2.7715 2.4369 9 6 5.2695 4.0867 2.4027 10 6 6.5827 4.1340 1.9773 11 6 7.2575 5.3405 1.9451 12 6 6.6200 6.5036 2.3378 13 6 5.3072 6.4629 2.7637 14 6 4.6269 5.2524 2.7980 15 8 3.3363 5.2092 3.2167 16 6 2.8095 6.3542 3.6957 17 1 3.3818 7.2693 3.6576 18 6 1.5331 6.3567 4.2372 19 7 0.8358 5.2421 4.2833 20 14 0.8028 7.9432 4.9001 21 1 1.7819 9.0470 4.7318 22 1 -0.4402 8.2655 4.1544 23 1 0.4867 7.7781 6.3416 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.6142 3.4120 -0.0002 28 1 0.4429 2.4101 -0.8908 29 1 0.4422 2.4105 0.8891 30 1 3.6515 0.5577 -1.2491 31 1 2.3165 1.3283 -2.1392 32 1 3.4879 2.3303 -1.2494 33 1 3.6513 0.5577 1.2493 34 1 2.3164 1.3285 2.1393 35 1 3.0439 3.4415 1.1848 36 1 5.2542 1.9529 2.4446 37 1 3.9193 2.7228 3.3354 38 1 7.0830 3.2277 1.6693 39 1 8.2844 5.3748 1.6124 40 1 7.1497 7.4444 2.3111 41 1 4.8115 7.3707 3.0745 42 1 -0.0573 5.2439 4.6617 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385033202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:08 Heat of formation + Delta-G solvation = 7.762323 kcal Electronic energy + Delta-G solvation = -21436.101286 eV Core-core repulsion = 18381.964117 eV Total energy + Delta-G solvation = -3054.137169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.20638 -38.14811 -36.38555 -34.51210 -32.29062 -31.18830 -29.75899 -28.81102 -27.03485 -25.92515 -25.34183 -23.69051 -21.56693 -21.10870 -20.39177 -17.93728 -17.91102 -16.83893 -15.85015 -15.35477 -14.77719 -14.59160 -14.47611 -14.17895 -13.79887 -13.68913 -13.38537 -13.08880 -12.81863 -12.70595 -12.11078 -11.90968 -11.70629 -11.68258 -11.36544 -11.29320 -11.23573 -10.88698 -10.77040 -10.63745 -10.57145 -10.40046 -10.34120 -10.24198 -9.33329 -9.18044 -8.85726 -8.11525 -7.75736 -7.18907 -6.46833 -4.05169 2.17668 2.40866 2.44111 3.10726 3.12812 3.17562 3.95171 4.50309 4.84205 5.03014 5.07036 5.16543 5.26258 5.38098 5.45682 5.58398 5.62919 5.64638 5.85862 5.90012 5.95438 5.98165 6.01949 6.11756 6.17028 6.27141 6.28866 6.35492 6.38191 6.47750 6.58056 6.63675 6.73935 6.79773 6.93922 6.97273 7.12229 7.28828 7.39778 7.43909 7.60549 7.86356 7.95266 8.04193 9.00008 9.68831 10.70831 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011965 B = 0.006509 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.654695 B = 4300.564476 C = 6239.315420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.139 4.139 3 C -0.036 4.036 4 C -0.146 4.146 5 C -0.125 4.125 6 C 0.074 3.926 7 N -0.681 5.681 8 C 0.118 3.882 9 C -0.156 4.156 10 C -0.060 4.060 11 C -0.214 4.214 12 C -0.076 4.076 13 C -0.234 4.234 14 C 0.157 3.843 15 O -0.177 6.177 16 C -0.390 4.390 17 H 0.091 0.909 18 C 0.041 3.959 19 N -0.862 5.862 20 Si 0.937 3.063 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.277 1.277 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.030 0.970 35 H 0.351 0.649 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.160 -5.840 -6.523 9.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.157 4.157 3 C -0.036 4.036 4 C -0.203 4.203 5 C -0.182 4.182 6 C -0.056 4.056 7 N -0.314 5.314 8 C -0.010 4.010 9 C -0.157 4.157 10 C -0.079 4.079 11 C -0.233 4.233 12 C -0.094 4.094 13 C -0.253 4.253 14 C 0.103 3.897 15 O -0.081 6.081 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.163 4.163 19 N -0.497 5.497 20 Si 0.763 3.237 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.202 1.202 24 H 0.109 0.891 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.172 0.828 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.143 0.857 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.252 -6.327 -6.824 9.857 hybrid contribution -1.005 1.043 1.110 1.825 sum 2.246 -5.284 -5.714 8.100 Atomic orbital electron populations 1.23978 0.96253 1.01880 1.01817 1.22923 0.95844 0.97747 0.99194 1.19672 0.95020 0.92790 0.96150 1.21958 0.98786 0.98097 1.01485 1.21670 0.98563 1.02800 0.95201 1.21849 0.95145 0.93104 0.95502 1.60715 1.25961 1.04315 1.40423 1.20468 0.94949 0.93830 0.91750 1.18851 0.94625 0.92928 1.09322 1.20534 0.93152 0.97107 0.97113 1.20589 0.99700 0.93101 1.09902 1.20752 0.94206 0.97262 0.97223 1.21151 0.95921 0.98320 1.09937 1.19218 0.85416 0.92683 0.92338 1.83943 1.19239 1.35868 1.69019 1.21337 0.99471 0.86264 1.39599 0.89193 1.25219 0.95584 0.98779 0.96724 1.70027 1.11218 1.26056 1.42410 0.85696 0.79160 0.80242 0.78650 1.19169 1.20210 1.20242 0.89070 0.87785 0.87816 0.91642 0.92863 0.92218 0.93241 0.93783 0.90957 0.91729 0.95137 0.82835 0.91846 0.94132 0.87110 0.87759 0.87675 0.85677 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.48 13.70 29.02 0.40 -2.08 16 2 C -0.14 -1.77 8.76 -36.02 -0.32 -2.08 16 3 C -0.04 -0.51 0.81 -155.66 -0.13 -0.64 16 4 C -0.15 -2.24 6.80 37.16 0.25 -1.99 16 5 C -0.13 -1.66 8.30 37.16 0.31 -1.35 16 6 C 0.07 1.18 4.63 -3.83 -0.02 1.16 16 7 N -0.68 -12.38 5.70 -115.07 -0.66 -13.04 16 8 C 0.12 2.28 5.48 -4.98 -0.03 2.25 16 9 C -0.16 -3.22 5.41 -104.44 -0.56 -3.79 16 10 C -0.06 -1.10 9.66 -39.61 -0.38 -1.48 16 11 C -0.21 -3.77 10.04 -39.53 -0.40 -4.17 16 12 C -0.08 -1.42 10.04 -39.61 -0.40 -1.81 16 13 C -0.23 -5.09 9.17 -39.40 -0.36 -5.45 16 14 C 0.16 3.70 6.62 -39.11 -0.26 3.44 16 15 O -0.18 -4.77 8.95 0.03 0.00 -4.77 16 16 C -0.39 -10.58 9.49 30.89 0.29 -10.28 16 17 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 18 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -24.35 13.67 55.48 0.76 -23.59 16 20 Si 0.94 20.29 29.55 -169.99 -5.02 15.26 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 H 0.09 0.96 8.06 -52.49 -0.42 0.53 16 25 H 0.10 1.32 5.69 -52.49 -0.30 1.02 16 26 H 0.10 1.18 8.06 -52.49 -0.42 0.76 16 27 H 0.06 1.11 6.57 -51.93 -0.34 0.77 16 28 H 0.05 0.72 7.50 -51.93 -0.39 0.33 16 29 H 0.06 0.99 7.50 -51.93 -0.39 0.60 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 1.06 7.60 -51.93 -0.39 0.66 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.35 7.23 6.71 -39.29 -0.26 6.97 16 36 H 0.06 1.07 8.00 -51.93 -0.42 0.66 16 37 H 0.04 0.89 7.86 -51.93 -0.41 0.48 16 38 H 0.11 1.73 8.04 -52.48 -0.42 1.31 16 39 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 42 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 343.02 15.07 5.17 5.17 Total: -1.00 -28.01 343.02 -7.85 -35.86 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -6.41 Total: 12.37 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: -1.69 Total: -27.27 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.10 Total: -36.63 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: 0.00 Total: -4.77 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.01 -7.85 -35.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385033202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.626 kcal (2) G-P(sol) polarization free energy of solvation -28.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds