Wall clock time and date at job start Mon Mar 30 2020 07:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 120.00330 * 2 1 4 4 C 1.53005 * 109.46751 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47401 * 240.00032 * 3 2 1 6 6 C 1.52992 * 109.47451 * 119.99457 * 3 2 1 7 7 N 1.46902 * 109.47440 * 180.02562 * 6 3 2 8 8 C 1.46896 * 111.00265 * 180.02562 * 7 6 3 9 9 C 1.50699 * 109.47325 * 180.02562 * 8 7 6 10 10 C 1.38118 * 120.03410 * 260.00127 * 9 8 7 11 11 C 1.38285 * 120.06721 * 179.97438 * 10 9 8 12 12 C 1.38323 * 120.13964 * 359.95502 * 11 10 9 13 13 C 1.38076 * 120.06761 * 0.02562 * 12 11 10 14 14 C 1.38854 * 120.03536 * 79.95475 * 9 8 7 15 15 O 1.35751 * 120.07020 * 0.04730 * 14 9 8 16 16 C 1.34834 * 117.00114 * 174.38801 * 15 14 9 17 17 H 1.07996 * 119.99771 * 5.06857 * 16 15 14 18 18 C 1.38655 * 119.99684 * 185.07486 * 16 15 14 19 19 N 1.31555 * 120.00329 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99885 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47008 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47461 * 119.99450 * 20 18 16 23 23 H 1.48499 * 109.46853 * 239.99794 * 20 18 16 24 24 H 1.08001 * 119.99741 * 179.97438 * 1 2 3 25 25 H 1.08000 * 120.00186 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00186 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47506 * 179.97438 * 4 3 2 28 28 H 1.09001 * 109.47271 * 300.00466 * 4 3 2 29 29 H 1.09004 * 109.47314 * 60.00136 * 4 3 2 30 30 H 1.08996 * 109.46794 * 299.99546 * 5 3 2 31 31 H 1.09001 * 109.46952 * 59.99331 * 5 3 2 32 32 H 1.09001 * 109.46961 * 179.97438 * 5 3 2 33 33 H 1.08996 * 109.47023 * 60.00283 * 6 3 2 34 34 H 1.09002 * 109.47742 * 300.00244 * 6 3 2 35 35 H 1.00901 * 110.99888 * 56.04980 * 7 6 3 36 36 H 1.08996 * 109.47209 * 59.99865 * 8 7 6 37 37 H 1.09000 * 109.47353 * 299.99890 * 8 7 6 38 38 H 1.08004 * 119.96844 * 359.97438 * 10 9 8 39 39 H 1.07999 * 119.92572 * 179.97438 * 11 10 9 40 40 H 1.08002 * 119.96339 * 180.02562 * 12 11 10 41 41 H 1.08000 * 120.02961 * 179.72101 * 13 12 11 42 42 H 0.96997 * 120.00240 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4680 -0.0006 5 6 2.9432 1.3861 -1.2492 6 6 2.9431 1.3862 1.2492 7 7 3.6772 2.6586 1.2495 8 6 4.5346 2.7715 2.4369 9 6 5.2695 4.0867 2.4027 10 6 6.5827 4.1340 1.9773 11 6 7.2575 5.3405 1.9451 12 6 6.6200 6.5036 2.3378 13 6 5.3072 6.4629 2.7637 14 6 4.6269 5.2524 2.7980 15 8 3.3363 5.2092 3.2167 16 6 2.8095 6.3542 3.6957 17 1 3.3818 7.2693 3.6576 18 6 1.5331 6.3567 4.2372 19 7 0.8358 5.2421 4.2833 20 14 0.8028 7.9432 4.9001 21 1 1.7819 9.0470 4.7318 22 1 -0.4402 8.2655 4.1544 23 1 0.4867 7.7781 6.3416 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.6142 3.4120 -0.0002 28 1 0.4429 2.4101 -0.8908 29 1 0.4422 2.4105 0.8891 30 1 3.6515 0.5577 -1.2491 31 1 2.3165 1.3283 -2.1392 32 1 3.4879 2.3303 -1.2494 33 1 3.6513 0.5577 1.2493 34 1 2.3164 1.3285 2.1393 35 1 3.0439 3.4415 1.1848 36 1 5.2542 1.9529 2.4446 37 1 3.9193 2.7228 3.3354 38 1 7.0830 3.2277 1.6693 39 1 8.2844 5.3748 1.6124 40 1 7.1497 7.4444 2.3111 41 1 4.8115 7.3707 3.0745 42 1 -0.0573 5.2439 4.6617 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385033202.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:08 Heat of formation + Delta-G solvation = -7.821949 kcal Electronic energy + Delta-G solvation = -21436.777071 eV Core-core repulsion = 18381.964117 eV Total energy + Delta-G solvation = -3054.812954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.87692 -39.40467 -38.09759 -35.90819 -34.25213 -32.51103 -31.07277 -30.41497 -28.25518 -27.50789 -27.10822 -25.08863 -23.25290 -22.28866 -21.94890 -19.76751 -19.07140 -18.58159 -17.23604 -16.71852 -16.46002 -16.16572 -15.96873 -15.68340 -15.34842 -15.14090 -14.82570 -14.59552 -14.37701 -14.12885 -13.60948 -13.49443 -13.07227 -13.00726 -12.98292 -12.60314 -12.54780 -12.49371 -12.25359 -12.15353 -12.07306 -11.91844 -11.58348 -11.40922 -11.08041 -10.79773 -10.22894 -9.66696 -9.30503 -8.89361 -8.45235 -6.11237 0.60461 0.80657 1.33635 1.40942 1.43446 1.50143 2.16558 2.85217 3.14017 3.49793 3.58309 3.82976 3.94337 4.06439 4.09932 4.15764 4.34420 4.40909 4.45574 4.51791 4.64302 4.71022 4.72105 4.75068 4.84505 4.88456 4.94304 5.07145 5.10170 5.15866 5.19487 5.20222 5.36826 5.40896 5.50284 5.70755 5.74894 5.77800 5.83292 5.95528 6.03224 6.13549 6.31161 6.37030 7.00758 7.81453 8.76601 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.011965 B = 0.006509 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.654695 B = 4300.564476 C = 6239.315420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 C -0.032 4.032 4 C -0.141 4.141 5 C -0.118 4.118 6 C 0.075 3.925 7 N -0.672 5.672 8 C 0.124 3.876 9 C -0.165 4.165 10 C -0.059 4.059 11 C -0.193 4.193 12 C -0.077 4.077 13 C -0.251 4.251 14 C 0.118 3.882 15 O -0.219 6.219 16 C -0.409 4.409 17 H 0.096 0.904 18 C -0.017 4.017 19 N -0.913 5.913 20 Si 1.010 2.990 21 H -0.255 1.255 22 H -0.270 1.270 23 H -0.271 1.271 24 H 0.113 0.887 25 H 0.093 0.907 26 H 0.125 0.875 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.003 0.997 35 H 0.333 0.667 36 H 0.094 0.906 37 H 0.000 1.000 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.140 0.860 41 H 0.114 0.886 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.498 -6.240 -7.884 11.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.165 4.165 3 C -0.033 4.033 4 C -0.198 4.198 5 C -0.175 4.175 6 C -0.054 4.054 7 N -0.303 5.303 8 C -0.005 4.005 9 C -0.166 4.166 10 C -0.077 4.077 11 C -0.211 4.211 12 C -0.095 4.095 13 C -0.270 4.270 14 C 0.068 3.932 15 O -0.125 6.125 16 C -0.486 4.486 17 H 0.113 0.887 18 C -0.215 4.215 19 N -0.551 5.551 20 Si 0.830 3.170 21 H -0.178 1.178 22 H -0.195 1.195 23 H -0.196 1.196 24 H 0.131 0.869 25 H 0.111 0.889 26 H 0.143 0.857 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.021 0.979 35 H 0.151 0.849 36 H 0.112 0.888 37 H 0.019 0.981 38 H 0.164 0.836 39 H 0.166 0.834 40 H 0.158 0.842 41 H 0.132 0.868 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.647 -6.734 -8.207 12.024 hybrid contribution -1.474 1.109 1.433 2.336 sum 4.173 -5.625 -6.773 9.743 Atomic orbital electron populations 1.24129 0.96291 1.02486 1.00873 1.22960 0.96031 0.97473 0.99987 1.19638 0.94659 0.93199 0.95773 1.21903 0.98875 0.97809 1.01214 1.21595 0.98608 1.02418 0.94892 1.21942 0.95401 0.92607 0.95487 1.60815 1.25618 1.04512 1.39343 1.20449 0.95033 0.94490 0.90512 1.19211 0.95882 0.92501 1.09022 1.20983 0.91842 0.99125 0.95784 1.21149 1.01302 0.92014 1.06653 1.21155 0.92835 0.99532 0.95953 1.21285 0.97556 0.97313 1.10880 1.19778 0.85066 0.94637 0.93753 1.83927 1.21302 1.36014 1.71281 1.21751 1.00108 0.86857 1.39861 0.88711 1.26377 0.95747 1.02470 0.96900 1.70173 1.11760 1.28594 1.44583 0.84639 0.78402 0.75980 0.77931 1.17802 1.19520 1.19633 0.86857 0.88886 0.85693 0.93987 0.91069 0.94445 0.91738 0.92528 0.92693 0.89578 0.97876 0.84883 0.88825 0.98148 0.83565 0.83397 0.84249 0.86842 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.71 13.70 67.78 0.93 -3.78 16 2 C -0.15 -3.53 8.76 25.65 0.22 -3.30 16 3 C -0.03 -0.91 0.81 -52.93 -0.04 -0.96 16 4 C -0.14 -4.55 6.80 71.98 0.49 -4.06 16 5 C -0.12 -2.96 8.30 71.98 0.60 -2.36 16 6 C 0.07 2.44 4.63 86.30 0.40 2.84 16 7 N -0.67 -25.21 5.70 -517.96 -2.95 -28.16 16 8 C 0.12 4.87 5.48 85.56 0.47 5.34 16 9 C -0.16 -6.82 5.41 -19.75 -0.11 -6.93 16 10 C -0.06 -1.96 9.66 22.25 0.22 -1.75 16 11 C -0.19 -5.94 10.04 22.30 0.22 -5.72 16 12 C -0.08 -2.65 10.04 22.25 0.22 -2.42 16 13 C -0.25 -11.02 9.17 22.39 0.21 -10.81 16 14 C 0.12 5.79 6.62 22.58 0.15 5.94 16 15 O -0.22 -12.65 8.95 -22.80 -0.20 -12.86 16 16 C -0.41 -23.50 9.49 67.92 0.64 -22.86 16 17 H 0.10 5.11 5.20 -2.91 -0.02 5.09 16 18 C -0.02 -0.95 5.49 84.83 0.47 -0.49 16 19 N -0.91 -54.93 13.67 21.61 0.30 -54.63 16 20 Si 1.01 43.08 29.55 68.60 2.03 45.11 16 21 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 H 0.11 2.15 8.06 -2.91 -0.02 2.12 16 25 H 0.09 2.37 5.69 -2.91 -0.02 2.35 16 26 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 27 H 0.04 1.53 6.57 -2.39 -0.02 1.52 16 28 H 0.07 1.98 7.50 -2.39 -0.02 1.96 16 29 H 0.04 1.34 7.50 -2.38 -0.02 1.32 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 1.57 7.60 -2.39 -0.02 1.55 16 33 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.33 14.74 6.71 -89.69 -0.60 14.14 16 36 H 0.09 3.05 8.00 -2.39 -0.02 3.03 16 37 H 0.00 0.01 7.86 -2.39 -0.02 -0.01 16 38 H 0.15 3.85 8.04 -2.91 -0.02 3.83 16 39 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 40 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 41 H 0.11 5.12 5.64 -2.91 -0.02 5.11 16 42 H 0.27 14.99 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -65.78 343.02 4.65 -61.13 By element: Atomic # 1 Polarization: 40.34 SS G_CDS: 0.40 Total: 40.74 kcal Atomic # 6 Polarization: -56.41 SS G_CDS: 5.09 Total: -51.32 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -2.66 Total: -82.80 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.20 Total: -12.86 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -65.78 4.65 -61.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385033202.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.306 kcal (2) G-P(sol) polarization free energy of solvation -65.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds