Wall clock time and date at job start Mon Mar 30 2020 07:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47348 * 2 1 4 4 C 1.52999 * 109.47135 * 239.99268 * 2 1 3 5 5 N 1.46903 * 109.47071 * 187.98468 * 4 2 1 6 6 C 1.48525 * 111.00073 * 300.39969 * 5 4 2 7 7 C 1.54940 * 103.22978 * 200.27956 * 6 5 4 8 8 C 1.54596 * 102.91786 * 37.41287 * 7 6 5 9 9 H 1.09002 * 110.38831 * 97.00290 * 8 7 6 10 10 C 1.50701 * 110.31143 * 219.12846 * 8 7 6 11 11 H 1.07994 * 120.00370 * 115.71968 * 10 8 7 12 12 C 1.37881 * 119.99681 * 295.72204 * 10 8 7 13 13 N 1.31513 * 120.00383 * 359.97438 * 12 10 8 14 14 Si 1.86797 * 119.99748 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47222 * 179.97438 * 14 12 10 16 16 H 1.48510 * 109.47098 * 299.99451 * 14 12 10 17 17 H 1.48498 * 109.47496 * 59.99460 * 14 12 10 18 18 C 1.47909 * 110.99654 * 183.00562 * 5 4 2 19 19 C 1.50706 * 109.46973 * 119.99873 * 2 1 3 20 20 C 1.38235 * 119.99980 * 89.72589 * 19 2 1 21 21 C 1.38238 * 119.99847 * 179.74392 * 20 19 2 22 22 C 1.38229 * 119.99819 * 0.55187 * 21 20 19 23 23 C 1.38240 * 120.00195 * 359.70270 * 22 21 20 24 24 C 1.38231 * 119.99913 * 269.99830 * 19 2 1 25 25 H 1.09002 * 109.47241 * 178.26836 * 1 2 3 26 26 H 1.09001 * 109.46853 * 298.27388 * 1 2 3 27 27 H 1.09001 * 109.46784 * 58.27512 * 1 2 3 28 28 H 0.96698 * 114.00185 * 155.70307 * 3 2 1 29 29 H 1.09006 * 109.46524 * 67.98989 * 4 2 1 30 30 H 1.08997 * 109.47504 * 307.98954 * 4 2 1 31 31 H 1.09000 * 110.67447 * 318.71351 * 6 5 4 32 32 H 1.09006 * 110.66638 * 81.68043 * 6 5 4 33 33 H 1.09004 * 110.72065 * 279.06353 * 7 6 5 34 34 H 1.08997 * 110.72645 * 155.77581 * 7 6 5 35 35 H 0.96998 * 119.99731 * 359.97438 * 13 12 10 36 36 H 1.08997 * 109.92086 * 26.49190 * 18 5 4 37 37 H 1.08998 * 109.91200 * 265.19813 * 18 5 4 38 38 H 1.08002 * 119.99856 * 359.97438 * 20 19 2 39 39 H 1.07994 * 119.99685 * 180.27294 * 21 20 19 40 40 H 1.07997 * 119.99985 * 179.72164 * 22 21 20 41 41 H 1.08002 * 119.99867 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.00174 * 0.02562 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.4964 -0.8902 -1.1568 6 6 4.1786 0.4243 -1.0445 7 6 5.6304 0.1091 -1.4844 8 6 5.4314 -0.9174 -2.6231 9 1 5.4657 -0.4204 -3.5926 10 6 6.4857 -1.9916 -2.5493 11 1 6.2018 -3.0141 -2.3492 12 6 7.8130 -1.6688 -2.7372 13 7 8.1588 -0.4237 -2.9814 14 14 9.1198 -3.0005 -2.6465 15 1 10.4568 -2.3989 -2.8826 16 1 9.0910 -3.6316 -1.3024 17 1 8.8507 -4.0297 -3.6825 18 6 4.0355 -1.5210 -2.3812 19 6 2.0324 -0.7104 1.2305 20 6 2.2573 -2.0739 1.1980 21 6 2.7231 -2.7247 2.3252 22 6 2.9531 -2.0138 3.4881 23 6 2.7231 -0.6511 3.5222 24 6 2.2628 0.0006 2.3934 25 1 -0.3634 -1.0272 -0.0311 26 1 -0.3633 0.4868 0.9051 27 1 -0.3633 0.5404 -0.8741 28 1 2.8966 1.4497 0.3635 29 1 1.7980 -0.1318 -2.1334 30 1 1.5648 -1.6995 -1.3234 31 1 3.7231 1.1528 -1.7152 32 1 4.1551 0.7833 -0.0155 33 1 6.1954 -0.3312 -0.6627 34 1 6.1244 1.0068 -1.8561 35 1 7.4801 0.2676 -3.0296 36 1 3.3850 -1.3035 -3.2283 37 1 4.1165 -2.5986 -2.2389 38 1 2.0727 -2.6302 0.2908 39 1 2.9031 -3.7892 2.2984 40 1 3.3127 -2.5229 4.3701 41 1 2.9031 -0.0956 4.4308 42 1 2.0824 1.0651 2.4202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397677972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:30 Heat of formation + Delta-G solvation = -18.083216 kcal Electronic energy + Delta-G solvation = -22235.378098 eV Core-core repulsion = 19180.120182 eV Total energy + Delta-G solvation = -3055.257916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.18832 -38.13219 -36.59159 -33.52538 -32.51155 -30.71896 -30.00426 -29.29183 -28.25528 -25.38841 -23.75223 -23.02095 -22.18871 -20.57044 -20.07305 -19.63861 -17.93469 -16.82681 -16.06286 -15.61155 -14.98022 -14.71970 -14.36883 -14.11773 -13.72541 -13.48560 -13.30356 -13.04238 -12.84168 -12.72532 -12.37154 -12.14020 -12.05855 -11.78331 -11.40789 -11.23187 -10.99613 -10.91746 -10.71122 -10.56157 -10.31469 -10.08914 -9.87943 -9.73897 -9.49614 -8.73686 -8.55500 -8.43542 -8.32769 -7.80627 -6.30228 -4.01283 1.49211 1.59754 3.45631 3.47380 3.65806 3.94268 4.18890 4.49094 4.56413 4.70698 4.92344 5.12241 5.14166 5.25740 5.29522 5.39803 5.58024 5.60463 5.64593 5.69759 5.72768 5.76645 5.93755 5.99332 6.07516 6.10307 6.13567 6.16206 6.20135 6.35957 6.60029 6.68167 6.70358 6.74037 6.87226 6.98323 7.15385 7.24348 7.31455 7.62350 7.72900 7.79431 8.26859 8.46838 8.92158 9.69466 11.07962 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020037 B = 0.005496 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.090499 B = 5093.672918 C = 5741.510234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.176 3.824 3 O -0.565 6.565 4 C 0.025 3.975 5 N -0.507 5.507 6 C 0.033 3.967 7 C -0.110 4.110 8 C 0.027 3.973 9 H 0.019 0.981 10 C -0.585 4.585 11 H 0.049 0.951 12 C 0.018 3.982 13 N -0.914 5.914 14 Si 1.066 2.934 15 H -0.283 1.283 16 H -0.288 1.288 17 H -0.289 1.289 18 C 0.052 3.948 19 C -0.097 4.097 20 C -0.072 4.072 21 C -0.121 4.121 22 C -0.122 4.122 23 C -0.126 4.126 24 C -0.119 4.119 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.380 0.620 29 H 0.040 0.960 30 H 0.078 0.922 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.270 0.730 36 H 0.020 0.980 37 H 0.072 0.928 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.099 -0.302 9.854 17.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.135 3.865 3 O -0.378 6.378 4 C -0.104 4.104 5 N -0.231 5.231 6 C -0.094 4.094 7 C -0.149 4.149 8 C 0.008 3.992 9 H 0.037 0.963 10 C -0.624 4.624 11 H 0.068 0.932 12 C -0.186 4.186 13 N -0.551 5.551 14 Si 0.895 3.105 15 H -0.209 1.209 16 H -0.215 1.215 17 H -0.216 1.216 18 C -0.075 4.075 19 C -0.097 4.097 20 C -0.090 4.090 21 C -0.139 4.139 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.137 4.137 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.234 0.766 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.038 0.962 37 H 0.091 0.909 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.937 -0.792 9.920 16.322 hybrid contribution -1.215 0.624 -0.349 1.410 sum -14.152 -0.169 9.572 17.086 Atomic orbital electron populations 1.21769 0.92342 1.02305 1.02834 1.20035 0.93776 0.81463 0.91243 1.86524 1.38210 1.26604 1.86441 1.22877 0.91270 0.99779 0.96474 1.64855 1.01746 1.18976 1.37475 1.23402 0.96720 0.90645 0.98649 1.22705 0.92765 0.99018 1.00389 1.19617 0.91625 0.94529 0.93471 0.96296 1.21972 0.92939 0.94336 1.53134 0.93238 1.25763 0.98646 1.00418 0.93763 1.70795 1.37773 1.00988 1.45506 0.83579 0.75954 0.74538 0.76440 1.20888 1.21493 1.21567 1.22958 0.96551 0.99770 0.88192 1.20229 1.00057 0.94675 0.94745 1.20948 0.96668 0.93803 0.97621 1.21124 0.99714 0.99919 0.93178 1.21098 1.00368 0.94447 0.98086 1.21006 1.00506 0.94722 0.98131 1.20914 1.00274 0.99832 0.92713 0.91208 0.91813 0.91685 0.76552 0.94176 0.90393 0.94168 0.92164 0.91471 0.93011 0.91818 0.96214 0.90925 0.85916 0.86328 0.86582 0.86528 0.86235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 8.82 37.16 0.33 -1.21 16 2 C 0.18 2.41 0.95 -91.77 -0.09 2.32 16 3 O -0.57 -8.29 11.15 -35.23 -0.39 -8.68 16 4 C 0.03 0.38 3.44 -3.82 -0.01 0.37 16 5 N -0.51 -9.32 4.06 -230.45 -0.94 -10.25 16 6 C 0.03 0.63 4.65 -1.90 -0.01 0.62 16 7 C -0.11 -2.53 5.57 -24.87 -0.14 -2.67 16 8 C 0.03 0.66 2.54 -90.42 -0.23 0.43 16 9 H 0.02 0.51 7.95 -51.93 -0.41 0.10 16 10 C -0.59 -16.32 8.38 -34.44 -0.29 -16.61 16 11 H 0.05 1.38 7.34 -52.49 -0.39 1.00 16 12 C 0.02 0.51 5.34 -17.82 -0.10 0.42 16 13 N -0.91 -27.36 13.45 55.43 0.75 -26.62 16 14 Si 1.07 25.27 29.90 -169.99 -5.08 20.19 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 18 C 0.05 1.11 6.35 -2.75 -0.02 1.09 16 19 C -0.10 -1.34 4.10 -104.62 -0.43 -1.77 16 20 C -0.07 -1.02 8.55 -39.58 -0.34 -1.36 16 21 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 22 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 23 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 24 C -0.12 -1.55 8.99 -39.59 -0.36 -1.91 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.38 5.37 4.73 45.56 0.22 5.59 16 29 H 0.04 0.64 7.99 -51.93 -0.41 0.23 16 30 H 0.08 1.09 6.98 -51.93 -0.36 0.73 16 31 H 0.04 0.75 7.66 -51.93 -0.40 0.35 16 32 H 0.06 1.04 5.60 -51.93 -0.29 0.75 16 33 H 0.07 1.70 7.86 -51.93 -0.41 1.29 16 34 H 0.05 1.21 7.10 -51.93 -0.37 0.84 16 35 H 0.27 7.99 5.65 -40.82 -0.23 7.76 16 36 H 0.02 0.39 7.69 -51.93 -0.40 -0.01 16 37 H 0.07 1.59 7.39 -51.93 -0.38 1.20 16 38 H 0.12 1.72 6.36 -52.49 -0.33 1.39 16 39 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.12 1.42 7.39 -52.48 -0.39 1.03 16 LS Contribution 323.97 15.07 4.88 4.88 Total: -1.00 -30.21 323.97 -9.54 -39.76 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.89 Total: 6.85 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: -2.87 Total: -26.12 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.19 Total: -36.87 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.39 Total: -8.68 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.08 Total: 20.19 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.21 -9.54 -39.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397677972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.675 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds