Wall clock time and date at job start Mon Mar 30 2020 07:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47348 * 2 1 4 4 C 1.52999 * 109.47135 * 239.99268 * 2 1 3 5 5 N 1.46903 * 109.47071 * 187.98468 * 4 2 1 6 6 C 1.48525 * 111.00073 * 300.39969 * 5 4 2 7 7 C 1.54940 * 103.22978 * 200.27956 * 6 5 4 8 8 C 1.54596 * 102.91786 * 37.41287 * 7 6 5 9 9 H 1.09002 * 110.38831 * 97.00290 * 8 7 6 10 10 C 1.50701 * 110.31143 * 219.12846 * 8 7 6 11 11 H 1.07994 * 120.00370 * 115.71968 * 10 8 7 12 12 C 1.37881 * 119.99681 * 295.72204 * 10 8 7 13 13 N 1.31513 * 120.00383 * 359.97438 * 12 10 8 14 14 Si 1.86797 * 119.99748 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47222 * 179.97438 * 14 12 10 16 16 H 1.48510 * 109.47098 * 299.99451 * 14 12 10 17 17 H 1.48498 * 109.47496 * 59.99460 * 14 12 10 18 18 C 1.47909 * 110.99654 * 183.00562 * 5 4 2 19 19 C 1.50706 * 109.46973 * 119.99873 * 2 1 3 20 20 C 1.38235 * 119.99980 * 89.72589 * 19 2 1 21 21 C 1.38238 * 119.99847 * 179.74392 * 20 19 2 22 22 C 1.38229 * 119.99819 * 0.55187 * 21 20 19 23 23 C 1.38240 * 120.00195 * 359.70270 * 22 21 20 24 24 C 1.38231 * 119.99913 * 269.99830 * 19 2 1 25 25 H 1.09002 * 109.47241 * 178.26836 * 1 2 3 26 26 H 1.09001 * 109.46853 * 298.27388 * 1 2 3 27 27 H 1.09001 * 109.46784 * 58.27512 * 1 2 3 28 28 H 0.96698 * 114.00185 * 155.70307 * 3 2 1 29 29 H 1.09006 * 109.46524 * 67.98989 * 4 2 1 30 30 H 1.08997 * 109.47504 * 307.98954 * 4 2 1 31 31 H 1.09000 * 110.67447 * 318.71351 * 6 5 4 32 32 H 1.09006 * 110.66638 * 81.68043 * 6 5 4 33 33 H 1.09004 * 110.72065 * 279.06353 * 7 6 5 34 34 H 1.08997 * 110.72645 * 155.77581 * 7 6 5 35 35 H 0.96998 * 119.99731 * 359.97438 * 13 12 10 36 36 H 1.08997 * 109.92086 * 26.49190 * 18 5 4 37 37 H 1.08998 * 109.91200 * 265.19813 * 18 5 4 38 38 H 1.08002 * 119.99856 * 359.97438 * 20 19 2 39 39 H 1.07994 * 119.99685 * 180.27294 * 21 20 19 40 40 H 1.07997 * 119.99985 * 179.72164 * 22 21 20 41 41 H 1.08002 * 119.99867 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.00174 * 0.02562 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.4964 -0.8902 -1.1568 6 6 4.1786 0.4243 -1.0445 7 6 5.6304 0.1091 -1.4844 8 6 5.4314 -0.9174 -2.6231 9 1 5.4657 -0.4204 -3.5926 10 6 6.4857 -1.9916 -2.5493 11 1 6.2018 -3.0141 -2.3492 12 6 7.8130 -1.6688 -2.7372 13 7 8.1588 -0.4237 -2.9814 14 14 9.1198 -3.0005 -2.6465 15 1 10.4568 -2.3989 -2.8826 16 1 9.0910 -3.6316 -1.3024 17 1 8.8507 -4.0297 -3.6825 18 6 4.0355 -1.5210 -2.3812 19 6 2.0324 -0.7104 1.2305 20 6 2.2573 -2.0739 1.1980 21 6 2.7231 -2.7247 2.3252 22 6 2.9531 -2.0138 3.4881 23 6 2.7231 -0.6511 3.5222 24 6 2.2628 0.0006 2.3934 25 1 -0.3634 -1.0272 -0.0311 26 1 -0.3633 0.4868 0.9051 27 1 -0.3633 0.5404 -0.8741 28 1 2.8966 1.4497 0.3635 29 1 1.7980 -0.1318 -2.1334 30 1 1.5648 -1.6995 -1.3234 31 1 3.7231 1.1528 -1.7152 32 1 4.1551 0.7833 -0.0155 33 1 6.1954 -0.3312 -0.6627 34 1 6.1244 1.0068 -1.8561 35 1 7.4801 0.2676 -3.0296 36 1 3.3850 -1.3035 -3.2283 37 1 4.1165 -2.5986 -2.2389 38 1 2.0727 -2.6302 0.2908 39 1 2.9031 -3.7892 2.2984 40 1 3.3127 -2.5229 4.3701 41 1 2.9031 -0.0956 4.4308 42 1 2.0824 1.0651 2.4202 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397677972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:29 Heat of formation + Delta-G solvation = -36.169491 kcal Electronic energy + Delta-G solvation = -22236.162378 eV Core-core repulsion = 19180.120182 eV Total energy + Delta-G solvation = -3056.042195 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.35410 -39.50502 -37.87546 -35.32179 -33.84755 -31.79651 -31.44023 -30.43446 -29.97340 -26.89253 -25.66933 -24.05495 -23.19301 -22.15231 -21.56012 -21.15579 -19.13822 -18.78097 -17.27719 -16.91659 -16.35661 -15.89014 -15.66726 -15.49238 -15.41917 -14.68718 -14.66299 -14.41405 -14.28095 -14.04908 -13.53032 -13.39681 -13.20028 -13.06108 -12.96165 -12.73126 -12.57257 -12.46354 -12.21406 -11.95621 -11.82353 -11.76756 -11.56917 -11.45570 -10.86295 -10.54370 -10.45874 -9.72889 -9.56588 -9.30257 -8.56870 -6.28597 0.50893 0.61337 1.53117 1.60783 1.79718 2.58572 2.95076 2.95635 3.22362 3.24525 3.66944 3.72055 3.94250 4.10728 4.17859 4.19698 4.30347 4.33182 4.35695 4.39580 4.55975 4.64907 4.66214 4.69154 4.76436 4.83330 4.87235 4.96578 5.02866 5.11542 5.16730 5.21203 5.24238 5.35260 5.45153 5.63903 5.70919 5.72599 5.97125 6.09931 6.15787 6.19758 6.24560 6.62684 6.68541 7.50057 8.81955 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020037 B = 0.005496 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.090499 B = 5093.672918 C = 5741.510234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.178 3.822 3 O -0.572 6.572 4 C 0.025 3.975 5 N -0.505 5.505 6 C 0.049 3.951 7 C -0.101 4.101 8 C 0.015 3.985 9 H -0.008 1.008 10 C -0.597 4.597 11 H 0.045 0.955 12 C -0.031 4.031 13 N -0.939 5.939 14 Si 1.111 2.889 15 H -0.285 1.285 16 H -0.274 1.274 17 H -0.271 1.271 18 C 0.063 3.937 19 C -0.106 4.106 20 C -0.090 4.090 21 C -0.135 4.135 22 C -0.128 4.128 23 C -0.129 4.129 24 C -0.128 4.128 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.381 0.619 29 H 0.036 0.964 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.038 0.962 35 H 0.260 0.740 36 H 0.030 0.970 37 H 0.064 0.936 38 H 0.118 0.882 39 H 0.129 0.871 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.201 -0.848 11.241 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.137 3.863 3 O -0.384 6.384 4 C -0.103 4.103 5 N -0.229 5.229 6 C -0.078 4.078 7 C -0.140 4.140 8 C -0.004 4.004 9 H 0.010 0.990 10 C -0.635 4.635 11 H 0.063 0.937 12 C -0.229 4.229 13 N -0.577 5.577 14 Si 0.934 3.066 15 H -0.211 1.211 16 H -0.199 1.199 17 H -0.197 1.197 18 C -0.065 4.065 19 C -0.106 4.106 20 C -0.108 4.108 21 C -0.153 4.153 22 C -0.146 4.146 23 C -0.147 4.147 24 C -0.146 4.146 25 H 0.102 0.898 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.235 0.765 29 H 0.054 0.946 30 H 0.111 0.889 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.136 0.864 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.077 -1.338 11.311 18.107 hybrid contribution -0.912 0.797 -0.766 1.433 sum -14.988 -0.541 10.544 18.334 Atomic orbital electron populations 1.21773 0.90410 1.03421 1.03294 1.20096 0.95115 0.80789 0.90312 1.86534 1.38191 1.27191 1.86466 1.23001 0.88946 1.00987 0.97401 1.64831 1.03765 1.18479 1.35782 1.23272 0.93640 0.91013 0.99890 1.22455 0.95257 0.97675 0.98647 1.19633 0.93468 0.94494 0.92773 0.99010 1.22321 0.93950 0.94835 1.52437 0.93696 1.27143 1.01270 1.01525 0.93005 1.70904 1.37564 1.01662 1.47562 0.83000 0.73397 0.72628 0.77621 1.21099 1.19905 1.19684 1.22711 0.94695 0.99191 0.89876 1.20264 1.00627 0.94652 0.95094 1.21031 0.97672 0.94157 0.97938 1.21375 0.99744 1.00750 0.93396 1.21419 0.99834 0.94757 0.98554 1.21341 0.99615 0.94936 0.98799 1.21110 1.00277 1.00423 0.92742 0.89810 0.91202 0.91381 0.76539 0.94562 0.88856 0.93676 0.90003 0.94133 0.94286 0.92920 0.95134 0.91733 0.86362 0.85269 0.84446 0.84242 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 8.82 71.98 0.63 -2.03 16 2 C 0.18 4.50 0.95 -11.54 -0.01 4.49 16 3 O -0.57 -15.57 11.15 -148.98 -1.66 -17.23 16 4 C 0.03 0.73 3.44 86.30 0.30 1.02 16 5 N -0.50 -18.07 4.06 -883.01 -3.59 -21.66 16 6 C 0.05 1.82 4.65 86.65 0.40 2.22 16 7 C -0.10 -4.78 5.57 31.80 0.18 -4.60 16 8 C 0.02 0.78 2.54 -10.66 -0.03 0.76 16 9 H -0.01 -0.46 7.95 -2.39 -0.02 -0.48 16 10 C -0.60 -33.84 8.38 25.60 0.21 -33.63 16 11 H 0.04 2.53 7.34 -2.91 -0.02 2.51 16 12 C -0.03 -1.80 5.34 84.66 0.45 -1.35 16 13 N -0.94 -57.50 13.45 21.45 0.29 -57.21 16 14 Si 1.11 50.83 29.90 68.60 2.05 52.88 16 15 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 18 C 0.06 2.65 6.35 86.44 0.55 3.20 16 19 C -0.11 -2.73 4.10 -19.86 -0.08 -2.81 16 20 C -0.09 -2.41 8.55 22.27 0.19 -2.22 16 21 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 22 C -0.13 -2.87 10.05 22.27 0.22 -2.64 16 23 C -0.13 -2.83 10.05 22.27 0.22 -2.61 16 24 C -0.13 -3.03 8.99 22.27 0.20 -2.83 16 25 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.38 9.99 4.73 -74.06 -0.35 9.64 16 29 H 0.04 1.09 7.99 -2.38 -0.02 1.08 16 30 H 0.09 2.42 6.98 -2.39 -0.02 2.40 16 31 H 0.05 1.64 7.66 -2.39 -0.02 1.62 16 32 H 0.08 2.70 5.60 -2.38 -0.01 2.68 16 33 H 0.04 2.09 7.86 -2.38 -0.02 2.07 16 34 H 0.04 1.89 7.10 -2.39 -0.02 1.87 16 35 H 0.26 15.97 5.65 -92.71 -0.52 15.44 16 36 H 0.03 1.20 7.69 -2.39 -0.02 1.18 16 37 H 0.06 2.81 7.39 -2.39 -0.02 2.79 16 38 H 0.12 3.18 6.36 -2.91 -0.02 3.16 16 39 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 40 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 41 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 42 H 0.13 2.76 7.39 -2.91 -0.02 2.73 16 Total: -1.00 -65.08 323.97 1.66 -63.42 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.90 Total: 25.97 kcal Atomic # 6 Polarization: -49.84 SS G_CDS: 3.67 Total: -46.17 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -3.30 Total: -78.87 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -1.66 Total: -17.23 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 2.05 Total: 52.88 kcal Total: -65.08 1.66 -63.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397677972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.255 kcal (2) G-P(sol) polarization free energy of solvation -65.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds