Wall clock time and date at job start Mon Mar 30 2020 07:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46884 * 2 1 4 4 H 1.09002 * 109.47378 * 305.00239 * 3 2 1 5 5 N 1.46493 * 109.47311 * 65.00502 * 3 2 1 6 6 C 1.34780 * 119.99663 * 274.99765 * 5 3 2 7 7 O 1.21279 * 120.00503 * 0.02562 * 6 5 3 8 8 C 1.50704 * 120.00107 * 179.97438 * 6 5 3 9 9 H 1.08997 * 109.47280 * 59.99661 * 8 6 5 10 10 C 1.53001 * 109.46746 * 300.00282 * 8 6 5 11 11 C 1.50701 * 109.47415 * 180.02562 * 8 6 5 12 12 H 1.07997 * 119.99850 * 35.09634 * 11 8 6 13 13 C 1.37875 * 119.99945 * 215.10434 * 11 8 6 14 14 N 1.31513 * 120.00134 * 184.90477 * 13 11 8 15 15 Si 1.86806 * 119.99914 * 4.90724 * 13 11 8 16 16 H 1.48495 * 109.47196 * 84.82278 * 15 13 11 17 17 H 1.48499 * 109.47015 * 204.82056 * 15 13 11 18 18 H 1.48500 * 109.47174 * 324.82040 * 15 13 11 19 19 C 1.50708 * 109.46970 * 185.00352 * 3 2 1 20 20 C 1.38230 * 119.99591 * 279.72435 * 19 3 2 21 21 C 1.38233 * 119.99568 * 179.78625 * 20 19 3 22 22 C 1.38232 * 120.00099 * 0.44616 * 21 20 19 23 23 C 1.50708 * 119.99895 * 179.83173 * 22 21 20 24 24 C 1.38229 * 119.99891 * 359.80885 * 22 21 20 25 25 C 1.38229 * 120.00128 * 359.97438 * 24 22 21 26 26 H 1.08994 * 109.47336 * 59.99812 * 1 2 3 27 27 H 1.08998 * 109.46810 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47022 * 299.99415 * 1 2 3 29 29 H 1.09004 * 109.46569 * 240.00301 * 2 1 3 30 30 H 1.08994 * 109.47336 * 120.00188 * 2 1 3 31 31 H 0.96994 * 120.00927 * 94.99670 * 5 3 2 32 32 H 1.09000 * 109.47038 * 295.06569 * 10 8 6 33 33 H 1.08995 * 109.47753 * 55.06860 * 10 8 6 34 34 H 1.09006 * 109.46857 * 175.07523 * 10 8 6 35 35 H 0.96996 * 119.99817 * 179.97438 * 14 13 11 36 36 H 1.08005 * 120.00564 * 0.02562 * 20 19 3 37 37 H 1.08002 * 119.99822 * 180.27482 * 21 20 19 38 38 H 1.08999 * 109.46995 * 269.97348 * 23 22 21 39 39 H 1.09002 * 109.46895 * 29.97988 * 23 22 21 40 40 H 1.09008 * 109.46781 * 149.97898 * 23 22 21 41 41 H 1.08001 * 119.99761 * 180.02562 * 24 22 21 42 42 H 1.08000 * 120.00029 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6525 2.0974 1.2518 6 6 0.4352 2.6644 1.3670 7 8 -0.3396 2.6319 0.4345 8 6 0.0363 3.3376 2.6549 9 1 0.7276 4.1529 2.8680 10 6 0.0799 2.3203 3.7969 11 6 -1.3616 3.8851 2.5236 12 1 -2.0979 3.3517 1.9408 13 6 -1.7004 5.0671 3.1473 14 7 -2.9433 5.4957 3.1136 15 14 -0.3940 6.0600 4.0402 16 1 0.3116 6.9352 3.0701 17 1 -1.0364 6.8966 5.0854 18 1 0.5812 5.1373 4.6748 19 6 3.5419 1.4443 -0.1239 20 6 4.3275 1.2087 0.9888 21 6 5.7050 1.2060 0.8743 22 6 6.2972 1.4481 -0.3511 23 6 7.7991 1.4488 -0.4752 24 6 5.5117 1.6889 -1.4628 25 6 4.1341 1.6871 -1.3492 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.2719 2.1232 1.9978 32 1 -0.6734 1.5510 3.6271 33 1 1.0671 1.8599 3.8359 34 1 -0.1231 2.8254 4.7413 35 1 -3.1817 6.3270 3.5528 36 1 3.8649 1.0230 1.9470 37 1 6.3187 1.0176 1.7428 38 1 8.1777 2.4556 -0.2988 39 1 8.2248 0.7664 0.2605 40 1 8.0811 1.1250 -1.4771 41 1 5.9743 1.8775 -2.4202 42 1 3.5204 1.8749 -2.2178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596657064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:00 Heat of formation + Delta-G solvation = -32.090660 kcal Electronic energy + Delta-G solvation = -21376.951372 eV Core-core repulsion = 18321.086048 eV Total energy + Delta-G solvation = -3055.865324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.04978 -38.74299 -35.69229 -33.62983 -32.45071 -31.98863 -31.07591 -30.77138 -27.98836 -25.23832 -24.79707 -23.05249 -22.55111 -21.48262 -20.16683 -19.26379 -17.06723 -16.84890 -15.90560 -15.41729 -15.12274 -14.91209 -14.72355 -14.17621 -13.93951 -13.54403 -13.38207 -13.25059 -13.00779 -12.63636 -12.41918 -12.38102 -12.12397 -11.89611 -11.71430 -11.36479 -11.17924 -11.09078 -11.05982 -10.78607 -10.73153 -10.53949 -10.17806 -9.79665 -9.14566 -9.02269 -8.75891 -8.58237 -8.45178 -8.37243 -6.04592 -4.03450 1.20631 1.30582 3.26035 3.32583 3.35252 3.58560 3.69116 3.92505 4.40313 4.59233 4.68794 4.79411 4.91212 5.10855 5.25973 5.28795 5.35513 5.36851 5.39990 5.53746 5.57877 5.66436 5.82630 5.93699 5.96470 6.07956 6.10523 6.17252 6.24858 6.31216 6.40444 6.43446 6.46547 6.53156 6.59051 6.83980 6.85474 6.90119 7.10208 7.20480 7.58587 8.20678 8.57359 9.11301 9.21978 9.55567 11.08751 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020994 B = 0.004693 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.389810 B = 5965.463797 C = 6688.929782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.183 3.817 4 H 0.092 0.908 5 N -0.742 5.742 6 C 0.520 3.480 7 O -0.523 6.523 8 C -0.006 4.006 9 H 0.053 0.947 10 C -0.133 4.133 11 C -0.493 4.493 12 H 0.086 0.914 13 C 0.071 3.929 14 N -0.896 5.896 15 Si 0.871 3.129 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.087 4.087 20 C -0.109 4.109 21 C -0.118 4.118 22 C -0.094 4.094 23 C -0.113 4.113 24 C -0.119 4.119 25 C -0.106 4.106 26 H 0.059 0.941 27 H 0.041 0.959 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.392 0.608 32 H 0.052 0.948 33 H 0.025 0.975 34 H 0.053 0.947 35 H 0.264 0.736 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.121 0.879 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.004 -10.146 -4.965 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C 0.077 3.923 4 H 0.110 0.890 5 N -0.398 5.398 6 C 0.309 3.691 7 O -0.397 6.397 8 C -0.027 4.027 9 H 0.070 0.930 10 C -0.191 4.191 11 C -0.531 4.531 12 H 0.104 0.896 13 C -0.130 4.130 14 N -0.534 5.534 15 Si 0.698 3.302 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.190 1.190 19 C -0.087 4.087 20 C -0.127 4.127 21 C -0.136 4.136 22 C -0.094 4.094 23 C -0.170 4.170 24 C -0.137 4.137 25 C -0.124 4.124 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.226 0.774 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.139 0.861 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 19.255 -9.997 -5.591 22.404 hybrid contribution 0.976 0.698 0.867 1.480 sum 20.231 -9.299 -4.724 22.761 Atomic orbital electron populations 1.21831 0.94289 1.00201 1.04044 1.21905 0.97329 0.95392 1.01545 1.19783 0.88865 0.93881 0.89726 0.88978 1.46490 1.18116 1.59972 1.15196 1.21675 0.79616 0.76502 0.91353 1.90585 1.50862 1.57378 1.40844 1.19352 0.99475 0.94928 0.88984 0.92959 1.21948 0.98470 0.99285 0.99412 1.20744 0.93474 1.07329 1.31523 0.89569 1.25023 0.95145 0.97067 0.95795 1.69883 1.17080 1.22212 1.44176 0.86975 0.82484 0.80731 0.80030 1.20170 1.21302 1.18992 1.20066 0.95333 0.99468 0.93844 1.20955 0.93558 0.99888 0.98347 1.20992 0.94628 1.00972 0.97012 1.19910 0.95944 0.99905 0.93602 1.20780 0.91460 1.02262 1.02477 1.20990 0.93503 1.00977 0.98217 1.21021 0.94736 0.99481 0.97171 0.92195 0.94027 0.91396 0.91888 0.92144 0.77357 0.92913 0.95617 0.92792 0.92592 0.85988 0.86128 0.91273 0.91662 0.91688 0.86141 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.51 37.16 0.32 -2.06 16 2 C -0.12 -1.69 5.59 -26.73 -0.15 -1.84 16 3 C 0.18 2.69 2.46 -69.08 -0.17 2.52 16 4 H 0.09 1.53 7.44 -51.93 -0.39 1.14 16 5 N -0.74 -12.32 4.84 -54.93 -0.27 -12.59 16 6 C 0.52 11.23 5.72 -10.98 -0.06 11.16 16 7 O -0.52 -13.05 12.90 5.56 0.07 -12.97 16 8 C -0.01 -0.13 2.30 -92.92 -0.21 -0.34 16 9 H 0.05 1.19 5.29 -51.93 -0.27 0.92 16 10 C -0.13 -2.64 9.12 37.16 0.34 -2.30 16 11 C -0.49 -14.09 8.36 -34.44 -0.29 -14.38 16 12 H 0.09 2.79 7.61 -52.49 -0.40 2.39 16 13 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 14 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 15 Si 0.87 21.09 26.99 -169.99 -4.59 16.50 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -5.92 6.82 56.52 0.39 -5.54 16 19 C -0.09 -1.09 4.96 -104.62 -0.52 -1.61 16 20 C -0.11 -1.25 9.06 -39.59 -0.36 -1.60 16 21 C -0.12 -1.21 9.70 -39.59 -0.38 -1.59 16 22 C -0.09 -0.92 5.88 -104.62 -0.62 -1.54 16 23 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 24 C -0.12 -1.22 9.70 -39.59 -0.38 -1.60 16 25 C -0.11 -1.22 9.67 -39.59 -0.38 -1.60 16 26 H 0.06 1.04 7.85 -51.93 -0.41 0.63 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 1.31 5.65 -51.93 -0.29 1.01 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.39 5.62 6.22 -40.82 -0.25 5.36 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.02 0.40 7.43 -51.93 -0.39 0.02 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.12 1.26 6.90 -52.48 -0.36 0.90 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 40 H 0.06 0.40 8.09 -51.92 -0.42 -0.02 16 41 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.12 1.29 8.04 -52.49 -0.42 0.87 16 LS Contribution 338.09 15.07 5.09 5.09 Total: -1.00 -32.53 338.09 -8.08 -40.61 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -6.56 Total: 5.51 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -2.61 Total: -15.27 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.51 Total: -39.48 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.07 Total: -12.97 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.59 Total: 16.50 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.53 -8.08 -40.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596657064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.522 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds