Wall clock time and date at job start Mon Mar 30 2020 07:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46884 * 2 1 4 4 H 1.09002 * 109.47378 * 305.00239 * 3 2 1 5 5 N 1.46493 * 109.47311 * 65.00502 * 3 2 1 6 6 C 1.34780 * 119.99663 * 274.99765 * 5 3 2 7 7 O 1.21279 * 120.00503 * 0.02562 * 6 5 3 8 8 C 1.50704 * 120.00107 * 179.97438 * 6 5 3 9 9 H 1.08997 * 109.47280 * 59.99661 * 8 6 5 10 10 C 1.53001 * 109.46746 * 300.00282 * 8 6 5 11 11 C 1.50701 * 109.47415 * 180.02562 * 8 6 5 12 12 H 1.07997 * 119.99850 * 35.09634 * 11 8 6 13 13 C 1.37875 * 119.99945 * 215.10434 * 11 8 6 14 14 N 1.31513 * 120.00134 * 184.90477 * 13 11 8 15 15 Si 1.86806 * 119.99914 * 4.90724 * 13 11 8 16 16 H 1.48495 * 109.47196 * 84.82278 * 15 13 11 17 17 H 1.48499 * 109.47015 * 204.82056 * 15 13 11 18 18 H 1.48500 * 109.47174 * 324.82040 * 15 13 11 19 19 C 1.50708 * 109.46970 * 185.00352 * 3 2 1 20 20 C 1.38230 * 119.99591 * 279.72435 * 19 3 2 21 21 C 1.38233 * 119.99568 * 179.78625 * 20 19 3 22 22 C 1.38232 * 120.00099 * 0.44616 * 21 20 19 23 23 C 1.50708 * 119.99895 * 179.83173 * 22 21 20 24 24 C 1.38229 * 119.99891 * 359.80885 * 22 21 20 25 25 C 1.38229 * 120.00128 * 359.97438 * 24 22 21 26 26 H 1.08994 * 109.47336 * 59.99812 * 1 2 3 27 27 H 1.08998 * 109.46810 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47022 * 299.99415 * 1 2 3 29 29 H 1.09004 * 109.46569 * 240.00301 * 2 1 3 30 30 H 1.08994 * 109.47336 * 120.00188 * 2 1 3 31 31 H 0.96994 * 120.00927 * 94.99670 * 5 3 2 32 32 H 1.09000 * 109.47038 * 295.06569 * 10 8 6 33 33 H 1.08995 * 109.47753 * 55.06860 * 10 8 6 34 34 H 1.09006 * 109.46857 * 175.07523 * 10 8 6 35 35 H 0.96996 * 119.99817 * 179.97438 * 14 13 11 36 36 H 1.08005 * 120.00564 * 0.02562 * 20 19 3 37 37 H 1.08002 * 119.99822 * 180.27482 * 21 20 19 38 38 H 1.08999 * 109.46995 * 269.97348 * 23 22 21 39 39 H 1.09002 * 109.46895 * 29.97988 * 23 22 21 40 40 H 1.09008 * 109.46781 * 149.97898 * 23 22 21 41 41 H 1.08001 * 119.99761 * 180.02562 * 24 22 21 42 42 H 1.08000 * 120.00029 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6525 2.0974 1.2518 6 6 0.4352 2.6644 1.3670 7 8 -0.3396 2.6319 0.4345 8 6 0.0363 3.3376 2.6549 9 1 0.7276 4.1529 2.8680 10 6 0.0799 2.3203 3.7969 11 6 -1.3616 3.8851 2.5236 12 1 -2.0979 3.3517 1.9408 13 6 -1.7004 5.0671 3.1473 14 7 -2.9433 5.4957 3.1136 15 14 -0.3940 6.0600 4.0402 16 1 0.3116 6.9352 3.0701 17 1 -1.0364 6.8966 5.0854 18 1 0.5812 5.1373 4.6748 19 6 3.5419 1.4443 -0.1239 20 6 4.3275 1.2087 0.9888 21 6 5.7050 1.2060 0.8743 22 6 6.2972 1.4481 -0.3511 23 6 7.7991 1.4488 -0.4752 24 6 5.5117 1.6889 -1.4628 25 6 4.1341 1.6871 -1.3492 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.2719 2.1232 1.9978 32 1 -0.6734 1.5510 3.6271 33 1 1.0671 1.8599 3.8359 34 1 -0.1231 2.8254 4.7413 35 1 -3.1817 6.3270 3.5528 36 1 3.8649 1.0230 1.9470 37 1 6.3187 1.0176 1.7428 38 1 8.1777 2.4556 -0.2988 39 1 8.2248 0.7664 0.2605 40 1 8.0811 1.1250 -1.4771 41 1 5.9743 1.8775 -2.4202 42 1 3.5204 1.8749 -2.2178 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596657064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:00 Heat of formation + Delta-G solvation = -52.351502 kcal Electronic energy + Delta-G solvation = -21377.829948 eV Core-core repulsion = 18321.086048 eV Total energy + Delta-G solvation = -3056.743900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.25253 -40.00509 -36.98537 -35.59346 -33.84994 -33.21388 -32.58714 -31.77753 -28.94969 -27.21467 -25.83481 -24.42605 -23.69871 -22.51715 -21.29203 -20.86727 -19.12607 -18.15773 -17.31907 -16.69836 -16.31406 -16.12243 -15.97592 -15.65238 -15.00096 -14.71443 -14.55437 -14.45364 -14.27513 -14.24331 -13.76561 -13.69653 -13.08058 -13.00571 -12.97362 -12.83699 -12.60759 -12.59239 -12.41085 -12.09897 -11.90763 -11.76533 -11.74876 -11.69244 -11.23098 -10.74703 -10.35307 -9.92013 -9.80985 -9.39205 -8.26339 -6.32047 0.37688 0.51132 1.35116 1.38263 1.48117 1.97813 2.35532 2.40335 2.85919 3.11428 3.59970 3.92132 4.07439 4.12194 4.16569 4.19310 4.27109 4.42513 4.44110 4.53751 4.60972 4.71917 4.75091 4.85032 4.87979 4.88983 4.93671 4.95433 5.01710 5.12754 5.17809 5.22171 5.30743 5.46682 5.49010 5.52589 5.56516 5.60637 5.72481 5.80116 6.12246 6.27638 6.69230 6.88815 7.29476 7.60035 8.91700 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.020994 B = 0.004693 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.389810 B = 5965.463797 C = 6688.929782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C 0.186 3.814 4 H 0.065 0.935 5 N -0.720 5.720 6 C 0.521 3.479 7 O -0.569 6.569 8 C -0.010 4.010 9 H 0.067 0.933 10 C -0.126 4.126 11 C -0.502 4.502 12 H 0.024 0.976 13 C 0.006 3.994 14 N -0.953 5.953 15 Si 0.945 3.055 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.224 1.224 19 C -0.103 4.103 20 C -0.115 4.115 21 C -0.122 4.122 22 C -0.094 4.094 23 C -0.113 4.113 24 C -0.125 4.125 25 C -0.118 4.118 26 H 0.036 0.964 27 H 0.060 0.940 28 H 0.033 0.967 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.407 0.593 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.266 0.734 36 H 0.133 0.867 37 H 0.144 0.856 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.139 0.861 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.711 -10.919 -3.724 27.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C 0.081 3.919 4 H 0.083 0.917 5 N -0.375 5.375 6 C 0.309 3.691 7 O -0.447 6.447 8 C -0.032 4.032 9 H 0.085 0.915 10 C -0.184 4.184 11 C -0.541 4.541 12 H 0.042 0.958 13 C -0.191 4.191 14 N -0.593 5.593 15 Si 0.767 3.233 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.147 1.147 19 C -0.103 4.103 20 C -0.133 4.133 21 C -0.140 4.140 22 C -0.094 4.094 23 C -0.169 4.169 24 C -0.143 4.143 25 C -0.137 4.137 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.245 0.755 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.151 0.849 37 H 0.161 0.839 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.157 0.843 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 24.027 -10.817 -4.340 26.704 hybrid contribution -0.494 0.857 0.364 1.054 sum 23.532 -9.960 -3.975 25.861 Atomic orbital electron populations 1.21752 0.96512 1.00478 1.01238 1.21852 0.95042 0.95042 1.03338 1.19780 0.90766 0.93806 0.87545 0.91651 1.46166 1.16408 1.58400 1.16533 1.21332 0.80749 0.76761 0.90249 1.90579 1.52627 1.59400 1.42078 1.19339 0.96313 0.96404 0.91165 0.91540 1.21818 1.00902 0.98087 0.97600 1.20883 0.95339 1.07404 1.30448 0.95768 1.26052 0.97762 0.98291 0.96970 1.70073 1.20003 1.23078 1.46107 0.85791 0.79666 0.79195 0.78657 1.19726 1.21081 1.14680 1.19844 0.93524 1.01929 0.95021 1.21111 0.94195 0.99779 0.98228 1.21296 0.94340 1.00304 0.98033 1.20310 0.97495 0.98349 0.93279 1.20839 0.89445 1.03045 1.03582 1.21254 0.92942 1.00579 0.99480 1.21156 0.95665 0.99808 0.97025 0.94471 0.92107 0.94772 0.89812 0.90450 0.75536 0.94347 0.90760 0.92600 0.92488 0.84899 0.83855 0.90592 0.90457 0.90699 0.84285 0.85787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 8.51 71.98 0.61 -4.11 16 2 C -0.11 -2.99 5.59 30.59 0.17 -2.82 16 3 C 0.19 5.33 2.46 44.25 0.11 5.44 16 4 H 0.07 2.24 7.44 -2.39 -0.02 2.23 16 5 N -0.72 -22.99 4.84 -446.09 -2.16 -25.15 16 6 C 0.52 22.77 5.72 87.66 0.50 23.27 16 7 O -0.57 -30.05 12.90 -3.03 -0.04 -30.09 16 8 C -0.01 -0.48 2.30 -12.28 -0.03 -0.51 16 9 H 0.07 2.86 5.29 -2.39 -0.01 2.85 16 10 C -0.13 -4.75 9.12 71.98 0.66 -4.09 16 11 C -0.50 -30.02 8.36 25.60 0.21 -29.81 16 12 H 0.02 1.69 7.61 -2.91 -0.02 1.67 16 13 C 0.01 0.33 5.47 84.65 0.46 0.79 16 14 N -0.95 -61.55 13.96 21.45 0.30 -61.25 16 15 Si 0.94 43.06 26.99 68.60 1.85 44.91 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 18 H -0.22 -8.70 6.82 99.48 0.68 -8.03 16 19 C -0.10 -2.38 4.96 -19.87 -0.10 -2.48 16 20 C -0.11 -2.24 9.06 22.27 0.20 -2.04 16 21 C -0.12 -2.03 9.70 22.27 0.22 -1.81 16 22 C -0.09 -1.53 5.88 -19.87 -0.12 -1.64 16 23 C -0.11 -1.17 10.01 71.24 0.71 -0.45 16 24 C -0.12 -2.22 9.70 22.27 0.22 -2.01 16 25 C -0.12 -2.54 9.67 22.27 0.22 -2.33 16 26 H 0.04 1.36 7.85 -2.39 -0.02 1.34 16 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.03 1.35 5.65 -2.38 -0.01 1.34 16 29 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.41 10.40 6.22 -92.71 -0.58 9.83 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 2.06 7.43 -2.39 -0.02 2.05 16 34 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 36 H 0.13 2.21 6.90 -2.91 -0.02 2.19 16 37 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 0.63 8.09 -2.39 -0.02 0.61 16 40 H 0.07 0.64 8.09 -2.38 -0.02 0.62 16 41 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.12 2.54 8.04 -2.91 -0.02 2.52 16 Total: -1.00 -76.65 338.09 4.40 -72.25 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.40 Total: 23.93 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 4.05 Total: -24.60 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -1.86 Total: -86.40 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.04 Total: -30.09 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.85 Total: 44.91 kcal Total: -76.65 4.40 -72.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596657064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.900 kcal (2) G-P(sol) polarization free energy of solvation -76.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds