Wall clock time and date at job start Mon Mar 30 2020 07:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46539 * 2 1 4 4 H 1.09000 * 109.47269 * 55.15171 * 3 2 1 5 5 C 1.53004 * 109.46864 * 175.15030 * 3 2 1 6 6 N 1.46500 * 109.47230 * 294.60705 * 5 3 2 7 7 C 1.34774 * 120.00150 * 181.56213 * 6 5 3 8 8 O 1.21277 * 120.00096 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00168 * 179.97438 * 7 6 5 10 10 H 1.09001 * 109.46803 * 60.00467 * 9 7 6 11 11 C 1.52995 * 109.47098 * 300.00570 * 9 7 6 12 12 C 1.50698 * 109.47272 * 180.02562 * 9 7 6 13 13 H 1.07995 * 120.00012 * 5.24225 * 12 9 7 14 14 C 1.37874 * 119.99721 * 184.96955 * 12 9 7 15 15 N 1.31512 * 120.00619 * 7.72894 * 14 12 9 16 16 Si 1.86804 * 119.99767 * 187.73806 * 14 12 9 17 17 H 1.48495 * 109.47480 * 94.93315 * 16 14 12 18 18 H 1.48498 * 109.47062 * 214.93944 * 16 14 12 19 19 H 1.48503 * 109.47058 * 334.93022 * 16 14 12 20 20 C 1.50695 * 109.47261 * 295.14838 * 3 2 1 21 21 C 1.38241 * 120.00054 * 299.73009 * 20 3 2 22 22 C 1.38235 * 119.99966 * 179.80805 * 21 20 3 23 23 C 1.38234 * 120.00071 * 0.39954 * 22 21 20 24 24 C 1.38243 * 119.99759 * 359.85540 * 23 22 21 25 25 C 1.38230 * 120.00248 * 359.95747 * 24 23 22 26 26 H 1.08997 * 109.46981 * 306.39672 * 1 2 3 27 27 H 1.08995 * 109.46775 * 66.40162 * 1 2 3 28 28 H 1.09002 * 109.46652 * 186.39714 * 1 2 3 29 29 H 1.08991 * 109.47140 * 240.00151 * 2 1 3 30 30 H 1.09003 * 109.47142 * 119.99766 * 2 1 3 31 31 H 1.08998 * 109.47118 * 174.60917 * 5 3 2 32 32 H 1.09001 * 109.47040 * 54.60790 * 5 3 2 33 33 H 0.97005 * 119.99798 * 1.56234 * 6 5 3 34 34 H 1.09012 * 109.46935 * 173.27588 * 11 9 7 35 35 H 1.08998 * 109.47125 * 293.27209 * 11 9 7 36 36 H 1.09002 * 109.47779 * 53.27882 * 11 9 7 37 37 H 0.96995 * 120.00147 * 179.97438 * 15 14 12 38 38 H 1.08000 * 119.99586 * 359.97438 * 21 20 3 39 39 H 1.08001 * 120.00197 * 180.23150 * 22 21 20 40 40 H 1.08003 * 120.00508 * 179.83302 * 23 22 21 41 41 H 1.08000 * 119.99649 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.00196 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6074 1.9808 0.8434 5 6 3.5651 1.4444 0.1220 6 7 3.9512 0.9054 1.4284 7 6 5.2526 0.8400 1.7725 8 8 6.1041 1.2278 1.0008 9 6 5.6498 0.2862 3.1166 10 1 5.3027 -0.7436 3.2021 11 6 5.0166 1.1313 4.2237 12 6 7.1501 0.3240 3.2521 13 1 7.7503 0.7872 2.4830 14 6 7.7563 -0.2278 4.3607 15 7 7.0444 -0.9190 5.2238 16 14 9.5888 0.0067 4.6371 17 1 9.8095 1.1702 5.5330 18 1 10.1552 -1.2149 5.2633 19 1 10.2586 0.2510 3.3343 20 6 1.6381 2.1174 -1.2861 21 6 2.0752 1.6136 -2.4969 22 6 1.7033 2.2303 -3.6769 23 6 0.9011 3.3557 -3.6456 24 6 0.4683 3.8625 -2.4345 25 6 0.8370 3.2436 -1.2547 26 1 -0.3633 0.6098 0.8272 27 1 -0.3633 0.4114 -0.9417 28 1 -0.3633 -1.0213 0.1145 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.9361 2.4648 0.0259 32 1 3.9934 0.8262 -0.6671 33 1 3.2701 0.5956 2.0457 34 1 5.2041 0.6633 5.1902 35 1 5.4530 2.1301 4.2129 36 1 3.9418 1.2025 4.0569 37 1 7.4709 -1.3075 6.0035 38 1 2.7050 0.7366 -2.5211 39 1 2.0417 1.8346 -4.6231 40 1 0.6127 3.8391 -4.5673 41 1 -0.1581 4.7420 -2.4100 42 1 0.4985 3.6393 -0.3086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596679061.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:36 Heat of formation + Delta-G solvation = -39.594256 kcal Electronic energy + Delta-G solvation = -20902.840331 eV Core-core repulsion = 17846.649627 eV Total energy + Delta-G solvation = -3056.190704 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.87782 -38.64456 -36.24354 -33.64749 -33.12367 -31.05008 -30.94128 -30.50286 -27.95859 -25.07375 -24.02439 -23.07098 -22.54179 -21.98573 -19.97353 -19.32388 -17.00620 -16.34851 -16.00076 -15.68197 -15.13541 -14.85675 -14.52165 -14.40253 -14.30351 -13.69425 -13.48736 -13.11587 -12.96810 -12.72474 -12.65885 -12.40204 -11.87483 -11.64207 -11.52936 -11.28532 -10.98247 -10.97002 -10.84980 -10.73608 -10.68196 -10.59898 -10.23181 -9.92149 -9.03400 -8.97653 -8.83091 -8.47949 -8.37787 -8.32919 -6.02805 -4.01578 1.23686 1.28787 3.35632 3.41854 3.49156 3.64843 3.79561 3.96447 4.50169 4.57525 4.66579 4.87227 4.89984 4.98376 5.01328 5.14321 5.32959 5.35806 5.38489 5.46523 5.55015 5.64376 5.83549 5.90685 5.94755 5.98318 6.03351 6.10580 6.19593 6.32801 6.38426 6.39773 6.56648 6.60333 6.80814 6.88303 6.90591 7.13316 7.48338 7.68068 8.00581 8.14333 8.50129 9.07709 9.30168 9.62905 11.07911 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031180 B = 0.003501 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.782309 B = 7995.309196 C = 8406.046869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.061 4.061 4 H 0.084 0.916 5 C 0.130 3.870 6 N -0.747 5.747 7 C 0.518 3.482 8 O -0.546 6.546 9 C 0.027 3.973 10 H 0.058 0.942 11 C -0.126 4.126 12 C -0.502 4.502 13 H 0.074 0.926 14 C 0.060 3.940 15 N -0.896 5.896 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.272 1.272 20 C -0.064 4.064 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.120 4.120 25 C -0.115 4.115 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.395 0.605 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.030 4.926 -12.460 21.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.080 4.080 4 H 0.102 0.898 5 C 0.005 3.995 6 N -0.402 5.402 7 C 0.308 3.692 8 O -0.422 6.422 9 C 0.006 3.994 10 H 0.076 0.924 11 C -0.184 4.184 12 C -0.540 4.540 13 H 0.092 0.908 14 C -0.141 4.141 15 N -0.535 5.535 16 Si 0.724 3.276 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.197 1.197 20 C -0.065 4.065 21 C -0.130 4.130 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.139 4.139 25 C -0.133 4.133 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.229 0.771 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.356 5.108 -12.861 21.425 hybrid contribution 0.575 -0.001 0.474 0.745 sum -15.781 5.107 -12.387 20.702 Atomic orbital electron populations 1.21765 0.95682 1.01480 1.01773 1.21624 0.95961 0.95035 1.02896 1.20496 0.95616 0.96614 0.95267 0.89760 1.21191 0.92107 0.99366 0.86814 1.46313 1.08855 1.67174 1.17816 1.21946 0.80364 0.76389 0.90497 1.90531 1.50109 1.47895 1.53680 1.18873 0.98016 0.96440 0.86039 0.92436 1.21687 0.95267 0.99490 1.01946 1.21133 0.90079 1.37072 1.05727 0.90795 1.24944 0.98373 0.94663 0.96125 1.69946 1.35993 1.34402 1.13207 0.86494 0.85212 0.77448 0.78428 1.20729 1.21355 1.19675 1.19706 0.96994 0.95336 0.94451 1.21068 0.99744 1.00239 0.91960 1.21139 0.98260 0.96143 0.98126 1.21124 0.98779 0.96856 0.97829 1.21113 1.00267 0.99883 0.92589 1.21078 0.98418 0.95540 0.98307 0.92744 0.92808 0.92801 0.91572 0.91034 0.92065 0.92124 0.77103 0.90687 0.94526 0.96614 0.93031 0.85936 0.86195 0.86391 0.86275 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.62 37.16 0.36 -1.00 16 2 C -0.12 -1.22 5.23 -26.73 -0.14 -1.36 16 3 C -0.06 -0.69 2.08 -91.77 -0.19 -0.88 16 4 H 0.08 0.89 7.88 -51.93 -0.41 0.48 16 5 C 0.13 1.94 4.79 -4.04 -0.02 1.92 16 6 N -0.75 -12.89 5.11 -60.29 -0.31 -13.19 16 7 C 0.52 11.93 7.15 -10.99 -0.08 11.85 16 8 O -0.55 -14.55 15.47 5.56 0.09 -14.46 16 9 C 0.03 0.69 2.51 -92.93 -0.23 0.45 16 10 H 0.06 1.50 8.11 -51.93 -0.42 1.08 16 11 C -0.13 -2.84 8.91 37.16 0.33 -2.51 16 12 C -0.50 -14.41 8.29 -34.44 -0.29 -14.70 16 13 H 0.07 2.25 6.78 -52.49 -0.36 1.90 16 14 C 0.06 1.68 5.26 -17.82 -0.09 1.59 16 15 N -0.90 -25.50 12.09 55.43 0.67 -24.83 16 16 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 20 C -0.06 -0.70 3.87 -104.62 -0.40 -1.11 16 21 C -0.11 -1.21 8.71 -39.58 -0.34 -1.56 16 22 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 23 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 24 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 25 C -0.12 -1.17 9.67 -39.58 -0.38 -1.55 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.50 7.59 -51.93 -0.39 0.11 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.69 7.25 -51.93 -0.38 0.32 16 30 H 0.07 0.77 7.07 -51.93 -0.37 0.40 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.95 7.57 -51.93 -0.39 0.56 16 33 H 0.39 5.85 6.98 -40.82 -0.28 5.57 16 34 H 0.07 1.84 6.96 -51.92 -0.36 1.47 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.01 0.28 7.38 -51.93 -0.38 -0.10 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.12 1.28 7.14 -52.49 -0.37 0.90 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.12 1.06 7.95 -52.49 -0.42 0.64 16 LS Contribution 343.44 15.07 5.18 5.18 Total: -1.00 -31.89 343.44 -8.71 -40.60 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.63 Total: 3.19 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -2.68 Total: -13.49 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.36 Total: -38.03 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.09 Total: -14.46 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.89 -8.71 -40.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596679061.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.009 kcal (2) G-P(sol) polarization free energy of solvation -31.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds