Wall clock time and date at job start Mon Mar 30 2020 07:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46539 * 2 1 4 4 H 1.09000 * 109.47269 * 55.15171 * 3 2 1 5 5 C 1.53004 * 109.46864 * 175.15030 * 3 2 1 6 6 N 1.46500 * 109.47230 * 294.60705 * 5 3 2 7 7 C 1.34774 * 120.00150 * 181.56213 * 6 5 3 8 8 O 1.21277 * 120.00096 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00168 * 179.97438 * 7 6 5 10 10 H 1.09001 * 109.46803 * 60.00467 * 9 7 6 11 11 C 1.52995 * 109.47098 * 300.00570 * 9 7 6 12 12 C 1.50698 * 109.47272 * 180.02562 * 9 7 6 13 13 H 1.07995 * 120.00012 * 5.24225 * 12 9 7 14 14 C 1.37874 * 119.99721 * 184.96955 * 12 9 7 15 15 N 1.31512 * 120.00619 * 7.72894 * 14 12 9 16 16 Si 1.86804 * 119.99767 * 187.73806 * 14 12 9 17 17 H 1.48495 * 109.47480 * 94.93315 * 16 14 12 18 18 H 1.48498 * 109.47062 * 214.93944 * 16 14 12 19 19 H 1.48503 * 109.47058 * 334.93022 * 16 14 12 20 20 C 1.50695 * 109.47261 * 295.14838 * 3 2 1 21 21 C 1.38241 * 120.00054 * 299.73009 * 20 3 2 22 22 C 1.38235 * 119.99966 * 179.80805 * 21 20 3 23 23 C 1.38234 * 120.00071 * 0.39954 * 22 21 20 24 24 C 1.38243 * 119.99759 * 359.85540 * 23 22 21 25 25 C 1.38230 * 120.00248 * 359.95747 * 24 23 22 26 26 H 1.08997 * 109.46981 * 306.39672 * 1 2 3 27 27 H 1.08995 * 109.46775 * 66.40162 * 1 2 3 28 28 H 1.09002 * 109.46652 * 186.39714 * 1 2 3 29 29 H 1.08991 * 109.47140 * 240.00151 * 2 1 3 30 30 H 1.09003 * 109.47142 * 119.99766 * 2 1 3 31 31 H 1.08998 * 109.47118 * 174.60917 * 5 3 2 32 32 H 1.09001 * 109.47040 * 54.60790 * 5 3 2 33 33 H 0.97005 * 119.99798 * 1.56234 * 6 5 3 34 34 H 1.09012 * 109.46935 * 173.27588 * 11 9 7 35 35 H 1.08998 * 109.47125 * 293.27209 * 11 9 7 36 36 H 1.09002 * 109.47779 * 53.27882 * 11 9 7 37 37 H 0.96995 * 120.00147 * 179.97438 * 15 14 12 38 38 H 1.08000 * 119.99586 * 359.97438 * 21 20 3 39 39 H 1.08001 * 120.00197 * 180.23150 * 22 21 20 40 40 H 1.08003 * 120.00508 * 179.83302 * 23 22 21 41 41 H 1.08000 * 119.99649 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.00196 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6074 1.9808 0.8434 5 6 3.5651 1.4444 0.1220 6 7 3.9512 0.9054 1.4284 7 6 5.2526 0.8400 1.7725 8 8 6.1041 1.2278 1.0008 9 6 5.6498 0.2862 3.1166 10 1 5.3027 -0.7436 3.2021 11 6 5.0166 1.1313 4.2237 12 6 7.1501 0.3240 3.2521 13 1 7.7503 0.7872 2.4830 14 6 7.7563 -0.2278 4.3607 15 7 7.0444 -0.9190 5.2238 16 14 9.5888 0.0067 4.6371 17 1 9.8095 1.1702 5.5330 18 1 10.1552 -1.2149 5.2633 19 1 10.2586 0.2510 3.3343 20 6 1.6381 2.1174 -1.2861 21 6 2.0752 1.6136 -2.4969 22 6 1.7033 2.2303 -3.6769 23 6 0.9011 3.3557 -3.6456 24 6 0.4683 3.8625 -2.4345 25 6 0.8370 3.2436 -1.2547 26 1 -0.3633 0.6098 0.8272 27 1 -0.3633 0.4114 -0.9417 28 1 -0.3633 -1.0213 0.1145 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.9361 2.4648 0.0259 32 1 3.9934 0.8262 -0.6671 33 1 3.2701 0.5956 2.0457 34 1 5.2041 0.6633 5.1902 35 1 5.4530 2.1301 4.2129 36 1 3.9418 1.2025 4.0569 37 1 7.4709 -1.3075 6.0035 38 1 2.7050 0.7366 -2.5211 39 1 2.0417 1.8346 -4.6231 40 1 0.6127 3.8391 -4.5673 41 1 -0.1581 4.7420 -2.4100 42 1 0.4985 3.6393 -0.3086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596679061.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:35 Heat of formation + Delta-G solvation = -57.578089 kcal Electronic energy + Delta-G solvation = -20903.620169 eV Core-core repulsion = 17846.649627 eV Total energy + Delta-G solvation = -3056.970542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.93137 -40.14373 -37.33628 -35.71285 -34.56034 -32.55367 -31.78147 -31.63278 -29.10092 -27.15127 -25.30842 -23.85797 -23.83232 -23.11302 -21.14870 -20.77214 -18.37834 -17.95350 -17.63936 -16.84899 -16.41679 -16.27804 -15.98437 -15.66902 -15.23478 -14.93842 -14.64428 -14.32756 -14.26015 -14.12933 -13.75107 -13.50345 -13.40648 -12.93190 -12.88265 -12.75945 -12.57905 -12.38513 -12.22293 -12.03053 -12.00353 -11.86915 -11.56721 -11.51905 -11.06230 -10.54954 -10.35092 -9.95193 -9.77267 -9.57068 -8.18403 -6.24028 0.47462 0.54459 1.39919 1.40995 1.53188 1.94722 2.35848 2.53811 2.92694 3.14252 3.67397 3.77797 4.01341 4.13704 4.19705 4.30278 4.33352 4.38318 4.49527 4.60731 4.66363 4.71933 4.74634 4.76514 4.91376 4.95623 5.02319 5.04031 5.09488 5.20754 5.22885 5.29914 5.43424 5.50061 5.58364 5.64376 5.66882 5.74454 5.76762 5.85436 6.16007 6.18722 6.75775 6.88206 7.40514 7.56260 8.91093 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031180 B = 0.003501 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.782309 B = 7995.309196 C = 8406.046869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.047 4.047 4 H 0.097 0.903 5 C 0.132 3.868 6 N -0.722 5.722 7 C 0.520 3.480 8 O -0.590 6.590 9 C 0.023 3.977 10 H 0.045 0.955 11 C -0.113 4.113 12 C -0.531 4.531 13 H 0.047 0.953 14 C 0.022 3.978 15 N -0.912 5.912 16 Si 0.952 3.048 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.280 1.280 20 C -0.078 4.078 21 C -0.129 4.129 22 C -0.128 4.128 23 C -0.131 4.131 24 C -0.125 4.125 25 C -0.124 4.124 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.410 0.590 34 H 0.055 0.945 35 H 0.027 0.973 36 H 0.058 0.942 37 H 0.265 0.735 38 H 0.118 0.882 39 H 0.134 0.866 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.701 5.612 -12.612 23.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.155 4.155 3 C -0.066 4.066 4 H 0.115 0.885 5 C 0.009 3.991 6 N -0.376 5.376 7 C 0.309 3.691 8 O -0.470 6.470 9 C 0.002 3.998 10 H 0.063 0.937 11 C -0.171 4.171 12 C -0.569 4.569 13 H 0.065 0.935 14 C -0.177 4.177 15 N -0.551 5.551 16 Si 0.778 3.222 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.205 1.205 20 C -0.078 4.078 21 C -0.147 4.147 22 C -0.146 4.146 23 C -0.149 4.149 24 C -0.143 4.143 25 C -0.142 4.142 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.247 0.753 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.136 0.864 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.090 5.784 -13.001 23.016 hybrid contribution 1.040 -0.213 0.449 1.153 sum -17.050 5.571 -12.552 21.892 Atomic orbital electron populations 1.21701 0.94287 1.02069 1.01980 1.21616 0.97131 0.94244 1.02467 1.20372 0.92366 0.97565 0.96252 0.88510 1.21288 0.95004 0.97973 0.84882 1.46002 1.07214 1.65477 1.18923 1.21568 0.81797 0.76228 0.89541 1.90508 1.51803 1.50108 1.54566 1.18810 0.96448 0.96355 0.88197 0.93674 1.21510 0.97711 0.98035 0.99848 1.21275 0.92161 1.37812 1.05658 0.93498 1.25573 1.02211 0.94222 0.95739 1.70004 1.37380 1.34359 1.13363 0.85638 0.80604 0.78026 0.77978 1.19694 1.20086 1.20507 1.19692 0.98017 0.96076 0.94027 1.21180 1.00285 1.00588 0.92659 1.21393 0.98355 0.96463 0.98398 1.21461 0.98043 0.96471 0.98907 1.21441 1.00139 1.00408 0.92285 1.21303 0.98252 0.95186 0.99410 0.91934 0.93024 0.92175 0.92057 0.91444 0.93493 0.93083 0.75302 0.92625 0.95398 0.92363 0.92594 0.86440 0.84765 0.84167 0.84053 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.62 71.98 0.69 -1.61 16 2 C -0.12 -2.27 5.23 30.60 0.16 -2.11 16 3 C -0.05 -0.99 2.08 -11.54 -0.02 -1.01 16 4 H 0.10 1.82 7.88 -2.39 -0.02 1.80 16 5 C 0.13 3.92 4.79 86.38 0.41 4.34 16 6 N -0.72 -24.49 5.11 -463.06 -2.36 -26.86 16 7 C 0.52 24.19 7.15 87.66 0.63 24.82 16 8 O -0.59 -32.37 15.47 -3.02 -0.05 -32.42 16 9 C 0.02 1.17 2.51 -12.29 -0.03 1.14 16 10 H 0.05 2.38 8.11 -2.39 -0.02 2.37 16 11 C -0.11 -5.04 8.91 71.98 0.64 -4.40 16 12 C -0.53 -31.21 8.29 25.60 0.21 -30.99 16 13 H 0.05 2.97 6.78 -2.91 -0.02 2.95 16 14 C 0.02 1.25 5.26 84.65 0.45 1.69 16 15 N -0.91 -51.86 12.09 21.45 0.26 -51.60 16 16 Si 0.95 45.42 29.54 68.60 2.03 47.45 16 17 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 19 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 20 C -0.08 -1.60 3.87 -19.87 -0.08 -1.68 16 21 C -0.13 -2.72 8.71 22.27 0.19 -2.52 16 22 C -0.13 -2.34 10.05 22.27 0.22 -2.11 16 23 C -0.13 -2.12 10.05 22.27 0.22 -1.89 16 24 C -0.12 -2.02 10.05 22.27 0.22 -1.79 16 25 C -0.12 -2.25 9.67 22.27 0.22 -2.03 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.05 0.86 7.59 -2.39 -0.02 0.84 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 29 H 0.06 1.25 7.25 -2.39 -0.02 1.23 16 30 H 0.07 1.35 7.07 -2.39 -0.02 1.33 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.63 7.57 -2.39 -0.02 1.61 16 33 H 0.41 11.44 6.98 -92.70 -0.65 10.79 16 34 H 0.05 2.69 6.96 -2.38 -0.02 2.68 16 35 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 2.04 7.38 -2.39 -0.02 2.02 16 37 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 38 H 0.12 2.48 7.14 -2.91 -0.02 2.46 16 39 H 0.13 1.95 8.06 -2.91 -0.02 1.92 16 40 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 41 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 42 H 0.13 2.00 7.95 -2.91 -0.02 1.98 16 Total: -1.00 -69.39 343.44 4.36 -65.03 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 0.35 Total: 18.56 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 4.14 Total: -20.16 kcal Atomic # 7 Polarization: -76.35 SS G_CDS: -2.11 Total: -78.45 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.05 Total: -32.42 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -69.39 4.36 -65.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596679061.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.448 kcal (2) G-P(sol) polarization free energy of solvation -69.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds