Wall clock time and date at job start Mon Mar 30 2020 07:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47143 * 2 1 4 4 N 1.46503 * 109.46965 * 180.02562 * 3 2 1 5 5 C 1.46499 * 119.99987 * 275.21686 * 4 3 2 6 6 C 1.50698 * 109.47596 * 270.00318 * 5 4 3 7 7 C 1.38241 * 119.99866 * 269.72903 * 6 5 4 8 8 C 1.38231 * 119.99691 * 179.76113 * 7 6 5 9 9 C 1.38244 * 120.00364 * 0.48559 * 8 7 6 10 10 C 1.38232 * 119.99645 * 359.78938 * 9 8 7 11 11 C 1.38234 * 120.00298 * 359.95644 * 10 9 8 12 12 C 1.34774 * 120.00171 * 95.22009 * 4 3 2 13 13 O 1.21280 * 119.99887 * 183.92185 * 12 4 3 14 14 C 1.50704 * 119.99722 * 3.92385 * 12 4 3 15 15 H 1.09002 * 109.47001 * 313.33285 * 14 12 4 16 16 C 1.53001 * 109.47118 * 73.33931 * 14 12 4 17 17 C 1.50708 * 109.46734 * 193.33604 * 14 12 4 18 18 H 1.07994 * 120.00056 * 359.97438 * 17 14 12 19 19 C 1.37878 * 119.99297 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99373 * 180.02562 * 19 17 14 21 21 Si 1.86797 * 120.00373 * 359.97438 * 19 17 14 22 22 H 1.48503 * 109.47141 * 90.00256 * 21 19 17 23 23 H 1.48504 * 109.46725 * 210.00041 * 21 19 17 24 24 H 1.48497 * 109.46945 * 329.99779 * 21 19 17 25 25 H 1.09000 * 109.46659 * 299.99727 * 1 2 3 26 26 H 1.08994 * 109.47049 * 59.99656 * 1 2 3 27 27 H 1.08994 * 109.47124 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46950 * 240.00560 * 2 1 3 29 29 H 1.09007 * 109.47328 * 120.00384 * 2 1 3 30 30 H 1.09000 * 109.47120 * 60.00555 * 3 2 1 31 31 H 1.08994 * 109.47429 * 300.00111 * 3 2 1 32 32 H 1.09003 * 109.47325 * 30.00152 * 5 4 3 33 33 H 1.09000 * 109.47339 * 149.99673 * 5 4 3 34 34 H 1.07997 * 120.00087 * 359.97438 * 7 6 5 35 35 H 1.08002 * 120.00110 * 180.24932 * 8 7 6 36 36 H 1.07993 * 120.00123 * 179.76776 * 9 8 7 37 37 H 1.07997 * 119.99895 * 179.97438 * 10 9 8 38 38 H 1.08001 * 120.00201 * 180.02562 * 11 10 9 39 39 H 1.08998 * 109.47256 * 66.11267 * 16 14 12 40 40 H 1.08995 * 109.47107 * 186.11421 * 16 14 12 41 41 H 1.09000 * 109.46820 * 306.11258 * 16 14 12 42 42 H 0.97002 * 120.00316 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2381 1.3269 1.2625 6 6 4.4895 2.7021 1.8252 7 6 5.6440 3.3851 1.4911 8 6 5.8723 4.6485 2.0033 9 6 4.9509 5.2250 2.8575 10 6 3.7991 4.5397 3.1961 11 6 3.5683 3.2784 2.6797 12 6 4.1785 1.5488 -1.1632 13 8 5.3891 1.4773 -1.1714 14 6 3.4270 1.7566 -2.4529 15 1 2.5916 1.0582 -2.5032 16 6 2.8971 3.1908 -2.5091 17 6 4.3528 1.5171 -3.6178 18 1 5.3823 1.2425 -3.4417 19 6 3.8855 1.6498 -4.9082 20 7 4.6933 1.4404 -5.9247 21 14 2.1050 2.1256 -5.2125 22 1 1.9932 3.6046 -5.2845 23 1 1.6461 1.5315 -6.4939 24 1 1.2603 1.6187 -4.1013 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.6493 0.7460 1.9725 33 1 5.1904 0.8270 1.0856 34 1 6.3660 2.9329 0.8273 35 1 6.7724 5.1838 1.7392 36 1 5.1310 6.2106 3.2606 37 1 3.0794 4.9899 3.8637 38 1 2.6682 2.7431 2.9439 39 1 3.7348 3.8856 -2.5683 40 1 2.2635 3.3098 -3.3879 41 1 2.3155 3.3986 -1.6109 42 1 4.3646 1.5333 -6.8326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596701545.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:12 Heat of formation + Delta-G solvation = -14.655445 kcal Electronic energy + Delta-G solvation = -21917.457765 eV Core-core repulsion = 18862.348489 eV Total energy + Delta-G solvation = -3055.109276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -39.81734 -38.59979 -35.79199 -34.02801 -33.03689 -31.53535 -30.79072 -30.68839 -26.69972 -25.60224 -25.13658 -22.61120 -22.47265 -21.55789 -20.84903 -18.41354 -16.96522 -16.68282 -15.91154 -15.78737 -15.28303 -14.83834 -14.69468 -14.48682 -14.07791 -13.54109 -13.30415 -13.23561 -12.93895 -12.57552 -12.45131 -12.34988 -12.11066 -11.85623 -11.55745 -11.38596 -11.27171 -11.05957 -10.94692 -10.84460 -10.55020 -10.49577 -10.27371 -9.62513 -9.07898 -8.93354 -8.81704 -8.57689 -8.45133 -8.19007 -6.03997 -4.03549 1.39426 1.50801 3.24314 3.30262 3.36434 3.49414 3.56065 4.03406 4.38926 4.86265 4.91920 5.03762 5.07089 5.12598 5.16344 5.25335 5.30434 5.42248 5.50823 5.58158 5.66377 5.75661 5.76642 5.90470 5.94113 6.04360 6.09803 6.16372 6.17153 6.21263 6.32537 6.42546 6.49057 6.52722 6.61796 6.66751 6.78213 7.03662 7.10810 7.19872 7.56815 8.01733 8.55651 9.08864 9.15053 9.55422 11.09134 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016815 B = 0.006153 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.733893 B = 4549.694896 C = 5360.423839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.106 3.894 4 N -0.622 5.622 5 C 0.153 3.847 6 C -0.098 4.098 7 C -0.094 4.094 8 C -0.123 4.123 9 C -0.123 4.123 10 C -0.128 4.128 11 C -0.110 4.110 12 C 0.533 3.467 13 O -0.528 6.528 14 C -0.003 4.003 15 H 0.048 0.952 16 C -0.146 4.146 17 C -0.503 4.503 18 H 0.091 0.909 19 C 0.071 3.929 20 N -0.896 5.896 21 Si 0.881 3.119 22 H -0.278 1.278 23 H -0.295 1.295 24 H -0.267 1.267 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.129 0.871 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.036 0.964 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.455 3.007 18.094 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C -0.017 4.017 4 N -0.357 5.357 5 C 0.030 3.970 6 C -0.099 4.099 7 C -0.112 4.112 8 C -0.141 4.141 9 C -0.142 4.142 10 C -0.146 4.146 11 C -0.129 4.129 12 C 0.324 3.676 13 O -0.402 6.402 14 C -0.024 4.024 15 H 0.066 0.934 16 C -0.203 4.203 17 C -0.541 4.541 18 H 0.109 0.891 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.712 3.288 22 H -0.205 1.205 23 H -0.223 1.223 24 H -0.192 1.192 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.147 0.853 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.751 2.944 17.852 19.311 hybrid contribution -1.091 0.416 -0.295 1.204 sum -7.841 3.360 17.557 19.520 Atomic orbital electron populations 1.21696 0.95488 1.01718 1.01775 1.21979 0.95813 0.97711 1.02828 1.21724 0.80117 0.96646 1.03262 1.48196 1.06119 1.75563 1.05792 1.20217 0.98658 0.92430 0.85716 1.20366 0.94698 0.97761 0.97101 1.21299 0.97320 0.94554 0.98041 1.21186 0.99540 0.95629 0.97728 1.21113 0.94742 0.99669 0.98648 1.21054 0.97634 0.95202 1.00715 1.21008 0.98627 0.95590 0.97682 1.21302 0.88188 0.73521 0.84611 1.90549 1.14758 1.48513 1.86410 1.19301 0.97037 0.94352 0.91727 0.93432 1.22174 1.00382 0.98692 0.99087 1.20932 0.98679 1.46754 0.87732 0.89055 1.24960 0.97064 0.94997 0.96025 1.69882 1.35272 1.49641 0.98664 0.86953 0.86254 0.78492 0.77143 1.20537 1.22278 1.19207 0.92914 0.92426 0.92642 0.91047 0.92052 0.91446 0.89158 0.90530 0.89223 0.85259 0.86228 0.86505 0.86476 0.86483 0.92182 0.93442 0.94470 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.14 -1.81 6.26 -26.73 -0.17 -1.98 16 3 C 0.11 1.47 4.82 -4.04 -0.02 1.45 16 4 N -0.62 -10.51 2.46 -175.06 -0.43 -10.95 16 5 C 0.15 2.23 5.59 -5.20 -0.03 2.20 16 6 C -0.10 -1.40 5.46 -104.62 -0.57 -1.97 16 7 C -0.09 -1.43 9.70 -39.58 -0.38 -1.82 16 8 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 9 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 10 C -0.13 -1.45 10.05 -39.59 -0.40 -1.85 16 11 C -0.11 -1.34 9.70 -39.58 -0.38 -1.72 16 12 C 0.53 11.76 6.89 -10.98 -0.08 11.68 16 13 O -0.53 -13.40 14.86 5.56 0.08 -13.32 16 14 C 0.00 -0.06 1.37 -92.92 -0.13 -0.19 16 15 H 0.05 1.09 6.24 -51.93 -0.32 0.76 16 16 C -0.15 -3.13 8.16 37.16 0.30 -2.83 16 17 C -0.50 -14.60 8.94 -34.44 -0.31 -14.91 16 18 H 0.09 3.02 7.08 -52.49 -0.37 2.65 16 19 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 20 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 21 Si 0.88 21.43 24.31 -169.99 -4.13 17.30 16 22 H -0.28 -6.61 6.92 56.52 0.39 -6.22 16 23 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.27 -5.97 6.53 56.52 0.37 -5.61 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.06 7.98 -51.93 -0.41 0.64 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 31 H 0.09 1.37 4.48 -51.93 -0.23 1.14 16 32 H 0.08 0.89 8.02 -51.93 -0.42 0.47 16 33 H 0.09 1.44 7.31 -51.93 -0.38 1.06 16 34 H 0.13 2.20 7.80 -52.49 -0.41 1.79 16 35 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 40 H 0.05 1.03 3.46 -51.93 -0.18 0.85 16 41 H 0.04 0.66 6.14 -51.93 -0.32 0.34 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 336.39 15.07 5.07 5.07 Total: -1.00 -32.93 336.39 -7.77 -40.70 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.45 Total: 3.26 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -2.68 Total: -15.02 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.34 Total: -37.99 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.13 Total: 17.30 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.93 -7.77 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596701545.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.047 kcal (2) G-P(sol) polarization free energy of solvation -32.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds