Wall clock time and date at job start Mon Mar 30 2020 07:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47143 * 2 1 4 4 N 1.46503 * 109.46965 * 180.02562 * 3 2 1 5 5 C 1.46499 * 119.99987 * 275.21686 * 4 3 2 6 6 C 1.50698 * 109.47596 * 270.00318 * 5 4 3 7 7 C 1.38241 * 119.99866 * 269.72903 * 6 5 4 8 8 C 1.38231 * 119.99691 * 179.76113 * 7 6 5 9 9 C 1.38244 * 120.00364 * 0.48559 * 8 7 6 10 10 C 1.38232 * 119.99645 * 359.78938 * 9 8 7 11 11 C 1.38234 * 120.00298 * 359.95644 * 10 9 8 12 12 C 1.34774 * 120.00171 * 95.22009 * 4 3 2 13 13 O 1.21280 * 119.99887 * 183.92185 * 12 4 3 14 14 C 1.50704 * 119.99722 * 3.92385 * 12 4 3 15 15 H 1.09002 * 109.47001 * 313.33285 * 14 12 4 16 16 C 1.53001 * 109.47118 * 73.33931 * 14 12 4 17 17 C 1.50708 * 109.46734 * 193.33604 * 14 12 4 18 18 H 1.07994 * 120.00056 * 359.97438 * 17 14 12 19 19 C 1.37878 * 119.99297 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99373 * 180.02562 * 19 17 14 21 21 Si 1.86797 * 120.00373 * 359.97438 * 19 17 14 22 22 H 1.48503 * 109.47141 * 90.00256 * 21 19 17 23 23 H 1.48504 * 109.46725 * 210.00041 * 21 19 17 24 24 H 1.48497 * 109.46945 * 329.99779 * 21 19 17 25 25 H 1.09000 * 109.46659 * 299.99727 * 1 2 3 26 26 H 1.08994 * 109.47049 * 59.99656 * 1 2 3 27 27 H 1.08994 * 109.47124 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46950 * 240.00560 * 2 1 3 29 29 H 1.09007 * 109.47328 * 120.00384 * 2 1 3 30 30 H 1.09000 * 109.47120 * 60.00555 * 3 2 1 31 31 H 1.08994 * 109.47429 * 300.00111 * 3 2 1 32 32 H 1.09003 * 109.47325 * 30.00152 * 5 4 3 33 33 H 1.09000 * 109.47339 * 149.99673 * 5 4 3 34 34 H 1.07997 * 120.00087 * 359.97438 * 7 6 5 35 35 H 1.08002 * 120.00110 * 180.24932 * 8 7 6 36 36 H 1.07993 * 120.00123 * 179.76776 * 9 8 7 37 37 H 1.07997 * 119.99895 * 179.97438 * 10 9 8 38 38 H 1.08001 * 120.00201 * 180.02562 * 11 10 9 39 39 H 1.08998 * 109.47256 * 66.11267 * 16 14 12 40 40 H 1.08995 * 109.47107 * 186.11421 * 16 14 12 41 41 H 1.09000 * 109.46820 * 306.11258 * 16 14 12 42 42 H 0.97002 * 120.00316 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2381 1.3269 1.2625 6 6 4.4895 2.7021 1.8252 7 6 5.6440 3.3851 1.4911 8 6 5.8723 4.6485 2.0033 9 6 4.9509 5.2250 2.8575 10 6 3.7991 4.5397 3.1961 11 6 3.5683 3.2784 2.6797 12 6 4.1785 1.5488 -1.1632 13 8 5.3891 1.4773 -1.1714 14 6 3.4270 1.7566 -2.4529 15 1 2.5916 1.0582 -2.5032 16 6 2.8971 3.1908 -2.5091 17 6 4.3528 1.5171 -3.6178 18 1 5.3823 1.2425 -3.4417 19 6 3.8855 1.6498 -4.9082 20 7 4.6933 1.4404 -5.9247 21 14 2.1050 2.1256 -5.2125 22 1 1.9932 3.6046 -5.2845 23 1 1.6461 1.5315 -6.4939 24 1 1.2603 1.6187 -4.1013 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.6493 0.7460 1.9725 33 1 5.1904 0.8270 1.0856 34 1 6.3660 2.9329 0.8273 35 1 6.7724 5.1838 1.7392 36 1 5.1310 6.2106 3.2606 37 1 3.0794 4.9899 3.8637 38 1 2.6682 2.7431 2.9439 39 1 3.7348 3.8856 -2.5683 40 1 2.2635 3.3098 -3.3879 41 1 2.3155 3.3986 -1.6109 42 1 4.3646 1.5333 -6.8326 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596701545.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:53:09 Heat of formation + Delta-G solvation = -34.999156 kcal Electronic energy + Delta-G solvation = -21918.339935 eV Core-core repulsion = 18862.348489 eV Total energy + Delta-G solvation = -3055.991446 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.22591 -39.78593 -37.19859 -35.91399 -34.20671 -33.40757 -31.99588 -31.75318 -27.81616 -27.19063 -26.85358 -24.22289 -23.44704 -22.54516 -22.08923 -19.93928 -18.91831 -17.74330 -17.61929 -17.30976 -16.55896 -16.24651 -15.83815 -15.67673 -15.47844 -15.05432 -14.86982 -14.35771 -14.24925 -14.03541 -13.82155 -13.52627 -13.48972 -13.04345 -12.87011 -12.78658 -12.57786 -12.47649 -12.29310 -12.13953 -11.97524 -11.82200 -11.56241 -11.44176 -11.24345 -10.79305 -10.47058 -9.79505 -9.69567 -9.53610 -8.28998 -6.36295 0.39710 0.52566 1.30198 1.36353 1.47733 1.85401 2.20104 2.32360 2.98671 3.04691 3.75604 3.88071 4.03493 4.04228 4.18170 4.18578 4.30886 4.34871 4.37454 4.45646 4.56859 4.59662 4.62642 4.68817 4.76082 4.76686 4.85129 4.93002 5.03085 5.12410 5.18658 5.23127 5.30559 5.40097 5.45613 5.54630 5.58289 5.63868 5.71927 5.76665 6.14798 6.23254 6.53433 6.78770 7.24671 7.46837 8.88961 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016815 B = 0.006153 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.733893 B = 4549.694896 C = 5360.423839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.142 4.142 3 C 0.097 3.903 4 N -0.609 5.609 5 C 0.153 3.847 6 C -0.112 4.112 7 C -0.125 4.125 8 C -0.137 4.137 9 C -0.122 4.122 10 C -0.123 4.123 11 C -0.105 4.105 12 C 0.527 3.473 13 O -0.581 6.581 14 C -0.002 4.002 15 H 0.064 0.936 16 C -0.139 4.139 17 C -0.519 4.519 18 H 0.026 0.974 19 C 0.008 3.992 20 N -0.952 5.952 21 Si 0.954 3.046 22 H -0.262 1.262 23 H -0.296 1.296 24 H -0.228 1.228 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.059 0.941 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.145 0.855 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.038 0.962 40 H 0.050 0.950 41 H 0.080 0.920 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.307 4.446 21.265 24.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C -0.024 4.024 4 N -0.341 5.341 5 C 0.031 3.969 6 C -0.114 4.114 7 C -0.144 4.144 8 C -0.155 4.155 9 C -0.140 4.140 10 C -0.140 4.140 11 C -0.123 4.123 12 C 0.317 3.683 13 O -0.459 6.459 14 C -0.024 4.024 15 H 0.082 0.918 16 C -0.196 4.196 17 C -0.557 4.557 18 H 0.045 0.955 19 C -0.189 4.189 20 N -0.592 5.592 21 Si 0.778 3.222 22 H -0.188 1.188 23 H -0.223 1.223 24 H -0.151 1.151 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.100 0.900 32 H 0.136 0.864 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.142 0.858 36 H 0.163 0.837 37 H 0.171 0.829 38 H 0.168 0.832 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.642 4.380 21.089 24.484 hybrid contribution 0.547 -0.057 -1.190 1.311 sum -11.094 4.322 19.899 23.189 Atomic orbital electron populations 1.21676 0.93281 1.02544 1.02731 1.21941 0.97626 0.96398 1.02070 1.22061 0.77567 0.98055 1.04748 1.48109 1.07676 1.73348 1.04958 1.20364 0.97903 0.93512 0.85153 1.20325 0.95120 0.97439 0.98475 1.21208 0.97977 0.96084 0.99169 1.21343 1.00658 0.95032 0.98479 1.21480 0.94306 1.00764 0.97443 1.21515 0.97693 0.94686 1.00142 1.21326 0.98781 0.95978 0.96213 1.21097 0.87499 0.73717 0.85938 1.90538 1.16926 1.51186 1.87295 1.19197 0.96276 0.96298 0.90608 0.91812 1.22054 1.00071 0.96123 1.01340 1.21077 0.97105 1.46951 0.90574 0.95544 1.26009 1.03134 0.94554 0.95169 1.70078 1.38377 1.51369 0.99403 0.85788 0.79321 0.79003 0.78080 1.18823 1.22313 1.15060 0.90496 0.92907 0.92000 0.94161 0.90644 0.87457 0.90033 0.86409 0.92227 0.89105 0.85789 0.83742 0.82873 0.83183 0.94292 0.93102 0.90137 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.91 71.98 0.71 -1.62 16 2 C -0.14 -3.07 6.26 30.59 0.19 -2.88 16 3 C 0.10 2.32 4.82 86.38 0.42 2.74 16 4 N -0.61 -19.89 2.46 -826.16 -2.03 -21.92 16 5 C 0.15 4.31 5.59 85.63 0.48 4.79 16 6 C -0.11 -3.07 5.46 -19.86 -0.11 -3.17 16 7 C -0.13 -4.02 9.70 22.27 0.22 -3.80 16 8 C -0.14 -3.63 10.05 22.27 0.22 -3.41 16 9 C -0.12 -2.49 10.05 22.27 0.22 -2.27 16 10 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 11 C -0.10 -2.08 9.70 22.27 0.22 -1.86 16 12 C 0.53 24.06 6.89 87.66 0.60 24.67 16 13 O -0.58 -32.08 14.86 -3.03 -0.04 -32.13 16 14 C 0.00 -0.10 1.37 -12.28 -0.02 -0.12 16 15 H 0.06 2.83 6.24 -2.39 -0.01 2.81 16 16 C -0.14 -5.71 8.16 71.98 0.59 -5.12 16 17 C -0.52 -31.90 8.94 25.60 0.23 -31.67 16 18 H 0.03 1.91 7.08 -2.91 -0.02 1.89 16 19 C 0.01 0.47 5.45 84.65 0.46 0.93 16 20 N -0.95 -62.17 13.96 21.45 0.30 -61.88 16 21 Si 0.95 43.72 24.31 68.60 1.67 45.39 16 22 H -0.26 -11.36 6.92 99.48 0.69 -10.67 16 23 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 24 H -0.23 -8.95 6.53 99.48 0.65 -8.30 16 25 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.04 1.12 7.98 -2.38 -0.02 1.10 16 29 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.11 1.78 8.11 -2.39 -0.02 1.76 16 31 H 0.08 2.12 4.48 -2.39 -0.01 2.11 16 32 H 0.12 2.32 8.02 -2.39 -0.02 2.30 16 33 H 0.06 2.04 7.31 -2.39 -0.02 2.02 16 34 H 0.09 3.52 7.80 -2.91 -0.02 3.49 16 35 H 0.12 2.99 8.06 -2.91 -0.02 2.96 16 36 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 38 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 39 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.05 2.05 3.46 -2.39 -0.01 2.04 16 41 H 0.08 2.59 6.14 -2.39 -0.01 2.58 16 42 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -80.61 336.39 5.47 -75.15 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.92 Total: 20.16 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 4.66 Total: -24.77 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -1.73 Total: -83.79 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.04 Total: -32.13 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.67 Total: 45.39 kcal Total: -80.61 5.47 -75.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596701545.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.146 kcal (2) G-P(sol) polarization free energy of solvation -80.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds