Wall clock time and date at job start Mon Mar 30 2020 07:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.31003 * 120.00275 * 2 1 4 4 C 1.50706 * 119.99543 * 0.02562 * 3 2 1 5 5 N 1.46900 * 109.46958 * 125.00073 * 4 3 2 6 6 C 1.46896 * 111.00195 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47382 * 179.97438 * 6 5 4 8 8 C 1.38280 * 119.97205 * 270.02476 * 7 6 5 9 9 C 1.38255 * 120.11174 * 179.97438 * 8 7 6 10 10 C 1.38163 * 120.05063 * 359.76900 * 9 8 7 11 11 C 1.38710 * 119.94702 * 0.48231 * 10 9 8 12 12 O 1.35900 * 120.05544 * 179.76528 * 11 10 9 13 13 C 1.42898 * 117.00172 * 359.72769 * 12 11 10 14 14 C 1.52997 * 109.47319 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46616 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47104 * 119.99966 * 19 17 15 22 22 H 1.48489 * 109.47200 * 240.00246 * 19 17 15 23 23 C 1.38129 * 119.97079 * 90.00085 * 7 6 5 24 24 H 1.08998 * 109.46560 * 300.00255 * 1 2 3 25 25 H 1.08999 * 109.47108 * 60.00050 * 1 2 3 26 26 H 1.09002 * 109.46857 * 180.02562 * 1 2 3 27 27 H 1.07996 * 119.99838 * 180.02562 * 2 1 3 28 28 H 1.07992 * 120.00128 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47105 * 4.99780 * 4 3 2 30 30 H 1.09006 * 109.46860 * 244.99975 * 4 3 2 31 31 H 1.00901 * 111.00271 * 303.95431 * 5 4 3 32 32 H 1.09005 * 109.46944 * 59.99947 * 6 5 4 33 33 H 1.09002 * 109.47398 * 300.00389 * 6 5 4 34 34 H 1.08000 * 119.95034 * 0.02562 * 8 7 6 35 35 H 1.07991 * 119.97457 * 180.02562 * 9 8 7 36 36 H 1.08006 * 120.02763 * 180.24929 * 10 9 8 37 37 H 1.09002 * 109.47259 * 300.00149 * 13 12 11 38 38 H 1.09001 * 109.47074 * 60.00171 * 13 12 11 39 39 H 1.09002 * 109.47153 * 300.00307 * 14 13 12 40 40 H 1.08998 * 109.47533 * 59.99936 * 14 13 12 41 41 H 0.97002 * 119.99731 * 180.02562 * 18 17 15 42 42 H 1.07998 * 120.02418 * 0.02613 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1621 1.1345 0.0000 4 6 1.4085 2.4396 0.0006 5 7 1.8521 3.2606 1.1351 6 6 1.1378 4.5438 1.1675 7 6 1.6179 5.3565 2.3423 8 6 0.9881 5.2381 3.5677 9 6 1.4265 5.9819 4.6475 10 6 2.4983 6.8421 4.5057 11 6 3.1284 6.9665 3.2763 12 8 4.1799 7.8155 3.1331 13 6 4.5799 8.5535 4.2895 14 6 5.7699 9.4482 3.9371 15 6 6.1922 10.2261 5.1568 16 1 5.6648 10.0951 6.0901 17 6 7.2525 11.1042 5.0815 18 7 7.8950 11.2634 3.9451 19 14 7.7755 12.0690 6.5932 20 1 6.8975 11.7119 7.7363 21 1 9.1837 11.7380 6.9289 22 1 7.6614 13.5233 6.3162 23 6 2.6868 6.2186 2.1942 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.0470 -0.9353 -0.0004 28 1 3.2420 1.1345 -0.0004 29 1 0.3404 2.2423 0.0905 30 1 1.6027 2.9716 -0.9308 31 1 1.7424 2.7633 2.0062 32 1 0.0676 4.3615 1.2653 33 1 1.3303 5.0903 0.2442 34 1 0.1530 4.5629 3.6817 35 1 0.9333 5.8874 5.6036 36 1 2.8430 7.4200 5.3506 37 1 3.7494 9.1710 4.6317 38 1 4.8680 7.8613 5.0806 39 1 6.6003 8.8304 3.5952 40 1 5.4823 10.1405 3.1459 41 1 8.6412 11.8809 3.8922 42 1 3.1782 6.3107 1.2369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599004470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:04 Heat of formation + Delta-G solvation = -12.922428 kcal Electronic energy + Delta-G solvation = -19678.213591 eV Core-core repulsion = 16623.179463 eV Total energy + Delta-G solvation = -3055.034127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.80779 -37.89644 -36.87647 -34.51405 -33.35764 -31.23558 -30.70673 -29.16693 -28.09417 -25.96229 -24.94457 -23.69448 -22.34147 -21.60388 -20.19540 -18.81944 -17.54276 -16.67928 -16.22708 -15.69461 -15.59936 -15.34849 -15.13665 -14.71535 -14.53591 -14.23332 -13.73184 -13.57830 -13.06416 -12.86605 -12.66876 -12.36619 -12.30615 -12.12868 -11.91695 -11.47186 -11.37294 -11.22181 -11.08929 -10.88548 -10.68102 -10.42689 -9.85088 -9.64859 -9.40063 -9.27596 -8.78100 -8.57519 -8.44452 -7.82771 -6.09728 -4.14255 1.43851 1.68667 1.88418 3.26957 3.33933 3.37595 3.80134 3.87603 4.27429 4.41435 4.60292 4.74395 4.82689 4.93951 5.01559 5.08508 5.18138 5.24967 5.26691 5.28997 5.38124 5.42502 5.48336 5.56142 5.71489 5.75250 5.86864 6.05010 6.07876 6.20294 6.31937 6.42341 6.55740 6.58687 6.68550 6.73571 6.76286 7.00663 7.16230 7.52300 7.65409 7.82618 8.08330 8.24846 8.91579 9.50001 11.01880 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034877 B = 0.002476 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.617304 B =11306.557619 C =11758.407381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.164 4.164 3 C -0.153 4.153 4 C 0.080 3.920 5 N -0.680 5.680 6 C 0.102 3.898 7 C -0.052 4.052 8 C -0.167 4.167 9 C -0.081 4.081 10 C -0.211 4.211 11 C 0.145 3.855 12 O -0.315 6.315 13 C 0.065 3.935 14 C 0.025 3.975 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.889 5.889 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.138 4.138 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.039 0.961 30 H 0.080 0.920 31 H 0.344 0.656 32 H 0.038 0.962 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.263 0.737 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.638 -19.019 -5.675 25.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.183 4.183 3 C -0.171 4.171 4 C -0.048 4.048 5 N -0.311 5.311 6 C -0.026 4.026 7 C -0.053 4.053 8 C -0.186 4.186 9 C -0.099 4.099 10 C -0.230 4.230 11 C 0.098 3.902 12 O -0.228 6.228 13 C -0.009 4.009 14 C -0.013 4.013 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.527 5.527 19 Si 0.726 3.274 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.158 4.158 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.128 0.872 28 H 0.134 0.866 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.162 0.838 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.147 0.853 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.827 -18.599 -6.275 25.215 hybrid contribution -0.449 0.307 1.392 1.494 sum -16.276 -18.292 -4.883 24.967 Atomic orbital electron populations 1.20877 0.93551 1.02123 1.01805 1.22865 0.96146 0.98017 1.01277 1.22821 1.00358 0.93400 1.00544 1.21129 0.96364 0.92072 0.95267 1.60421 1.59738 1.04531 1.06439 1.20847 0.94947 0.89857 0.96934 1.19371 0.95272 0.96205 0.94410 1.20763 1.02121 1.02743 0.92936 1.20839 0.95562 0.95158 0.98318 1.21395 0.99945 1.04056 0.97574 1.19203 0.87667 0.89972 0.93392 1.86178 1.44420 1.52513 1.39723 1.23325 0.99126 0.93160 0.85267 1.19131 0.90661 0.93497 0.97971 1.21010 1.15574 1.23866 0.95928 0.92320 1.25001 0.96167 0.96816 0.96294 1.69992 1.21404 1.36419 1.24907 0.86426 0.78507 0.79711 0.82713 1.19652 1.20841 1.20844 1.20266 0.98522 0.98586 0.98377 0.91833 0.91695 0.92220 0.87187 0.86596 0.94309 0.90166 0.83796 0.94370 0.89976 0.86841 0.86238 0.85265 0.93161 0.93144 0.95360 0.95384 0.92766 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.75 8.65 36.01 0.31 -0.44 16 2 C -0.16 -1.16 10.26 -36.02 -0.37 -1.53 16 3 C -0.15 -1.24 9.78 -36.02 -0.35 -1.59 16 4 C 0.08 0.66 5.93 -4.97 -0.03 0.63 16 5 N -0.68 -6.79 6.48 -116.34 -0.75 -7.55 16 6 C 0.10 1.04 5.81 -4.98 -0.03 1.01 16 7 C -0.05 -0.67 5.39 -104.65 -0.56 -1.23 16 8 C -0.17 -2.02 9.70 -39.56 -0.38 -2.40 16 9 C -0.08 -1.06 10.04 -39.60 -0.40 -1.46 16 10 C -0.21 -3.35 9.04 -39.43 -0.36 -3.70 16 11 C 0.14 2.58 6.69 -39.22 -0.26 2.32 16 12 O -0.32 -6.65 10.14 -19.43 -0.20 -6.84 16 13 C 0.07 1.42 4.68 37.16 0.17 1.60 16 14 C 0.02 0.65 5.34 -27.89 -0.15 0.50 16 15 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 19 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C -0.14 -2.16 9.64 -39.43 -0.38 -2.54 16 24 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 25 H 0.06 0.36 7.85 -51.93 -0.41 -0.04 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.11 0.69 8.06 -52.49 -0.42 0.26 16 28 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 29 H 0.04 0.28 5.79 -51.93 -0.30 -0.02 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.34 3.32 8.72 -39.29 -0.34 2.98 16 32 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 34 H 0.11 1.09 8.06 -52.49 -0.42 0.66 16 35 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 36 H 0.13 2.02 6.30 -52.48 -0.33 1.69 16 37 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 38 H 0.05 1.05 7.65 -51.93 -0.40 0.65 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.13 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 352.99 15.07 5.32 5.32 Total: -1.00 -30.29 352.99 -9.88 -40.17 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.76 Total: 0.74 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -3.20 Total: -22.32 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: -0.02 Total: -33.43 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.20 Total: -6.84 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.29 -9.88 -40.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599004470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.243 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds